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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0054200 |
| Transcript ID | LotjaGi1g1v0054200.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Urease accessory protein UreF; TAIR: AT1G21840.1 urease accessory protein F; Swiss-Prot: sp|Q9XHZ3|UREF_ARATH Urease accessory protein F; TrEMBL-Plants: tr|I3SDX7|I3SDX7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0054200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:7646757..7650236) extracted from Lotus japonicus Gifu genome v1.2.
GAAACATGTGCTATGTGCTGGGGAAGTAGTTCTGTCGGAGACGGAAGGGAGATAAGAACATCAGAAACATCATCACTCTT TGCTCTGTGATCGCTCAATTCTTGTTCTTCAACTTTACCTGGTAAACTTTACAACATTCTCTAATGCTTCATCTTATTTA CTCTTTCTTTTCTACATTATTTGTATTTTCTGTTCCATGTCAAATTTCCATTATGGGTTTTGTTGCTTGCTCTTTTATGC TCTGGATTGTAGTTGTAGCCATCCTCAATAGTTTCTTCAATTGTTCTTCGTAATCTTTGATGAAATTAACATTAATCATA GCTTGGTAGACCCAATTTGAAGTAAGTACTAGGAACAACAAACATGGACAAGGGATTTTTCTTCTTCTTTTGTTTGATTA AAGTTGTAATATTTTTATATTTTTAGTTGTCCTGGCCCCTTAAAAATTAATTTTTGTGACCACCCATGATTGTTTTTCCT GCTATTAAGAAGAACCTTATTTGGGTCTCTGTTTGGTCATGGACTCATGGATGGTGCTCTAGTTTGGTGAGTATGTAAGT GATGGAAATATCCAATATATTGGAAGATATGGTCTACATAGTAATACACCTTAAGTTCCCATCAATGGGCCATGGTCACA ATCATGTTCATGAATTATGGATTGATATGTGAGTACATGTTTGTTGGAAATGCGCAATAAGTAGGTGCATTGGTTTTTTC AGATTTCATTGGTGAGAGTGAAGCAGAAGCTTGGGTTCTTCTGGCTTAGATGGGTTTCGGGACGCTGAGTTTATCAAGAA CAGTTCGATTTGAGGCGACAAGTTTCAATGGTTTGCCCCCGCCTCGGCCCCCTAAGTCGTTGCCTCATTTGTCACTCACA AAGCCATCCTGGGTCGTGAGGACGGAGTCTAATGTTCGGAAGAAGAGAAGAAAGACGCCGGATCCCCCGTGTGTGGTGTG TGAGGGGAGTGGACGAGTTGATTGTCACGAATGTTGTGGAAGAGGAAGGACAAACCTGGTTCATTTGGAAATGCTCCCAA ATGGTGAATGGCCAAAATGGTGTAGGACTTGTGGTGGAAGTGGTCTTAGTTACTGCTCTCGTTGCCTTGGTACTGGAGAA TATAGGTATATTATGGGCTTCCATTTCATGAAAAGGGAAAACAATGAATCCCAGGAAAACAAGTCTTAGTTTTTTTTTCC TAGGTGATGATATTAGGTTTGAGGTCATATTGTCATAATGTCATGGTACAGCAGCTTTACCTGTAATTGCTGAATAATTA GTCTTAACTCTTAATCATTTTATGGAAATCCTCCATTTTACTAGATTCATTTCAACTCCTACTTCCGTGTGCAATTTGAT TTTAATATGCGGGTTGATATCTTGTAACTTGAGCAGCTAATATAGTTATAAAATATTTGTAAGATAATGATTCTAAATGG TCTGAAATAGACAGTTTCCTGAAGAAAACTATCCAAAAATATAAAAGGCAAAGGAAAAAAGAAGACAATAAGTTCAAAGT TAGTTCTTTTTACTCAGTTTCGCTTATACTTTTAACAGATACATTTGACATGTTTTTACTCCACTTTGAAATTAGATTAT GTAAAATGCTCCCCCTCCTTCAAGAATAAGTCAGTTTTAACTTGTTGTTTGGAAATATAAAAGCATAATGGGATTCACTT CTTAATGAGATTTGATAATTTTCTTGCTCTCCCTTTCAATGTATTGAGGTGAATATGCACAAATAGAGAATTTCAGAACA CCTGTGAATGGTAATTGAGGAAATTTATGGTCTCTGTAACTGGCTTAGCTGTTTTCTTGCTGTCAAGACTCGAGAGAGAT TTGAAGGATGTCTAACCTTAGTCCATATTTCATGCCACTGTTAATATCCATATCTTTTTTAATAAATATTTGCCACCATA GGCAGTGATCACCATGCTTGTTCGGAATATTGACTTGCGGAGGAAGCATAGTACTTGTCACTGTTGGTTCTTTTATCTTC AAATTTTGTTGGTAGAAGTCCTTGGCCTCAATATTAAATCTGTTTCTCTGATGAAGTAGGTAATGGATAATTGTGAGATC TTCTGTGATAGAATTAAAGCTTCCTTGCTTAATTTTAGCATGTTCAACTTGAAAATTGTTTTCACTGGGTGCTTATGATG GCTCACTTCTAGAGTTGATAACTAGGTATACCTTTTGAAGTTAGAAGAGTAGTTTGTGACTTTATGATTTTTTTTGTTCT TCGCAAGATTCTTGCTATGCTAGATATGCTGTAAGTTATTATCAGTAGAATTTGCAAACTCAAAGCAACTATCTTCTATG AGCGTATTTGTAGTGTGTAAGTTGTTATGATAAGATTGTAGATCTTTCAGAAACTCAACTTTGGTTAGGTTGAATTTCCC TAAAAGTTCTTCTCTTACATTTATAATTCAATTTCAGAAGATCTATAAAACTAGTTCAGATTGTTTACAAGTTTGAATGC ATAAATCTGGCCGATAGGAACTTAATGCAATCTGACATCCCTGAGCAACACCAGAGTAATATCATTCATGATGCAAATAA ATGAAGGCCATGACAGACCTTGCACTGCAAACTCATTTTTACAATGGAGTCAATGGCAGCTGCTTGATTCTCTTCTACCT ACTGGTGGATTTGCGCATTCTCTTGGCCTGGAAGCAGCAGTTCAGTCCCACTTAGTGTCGGACTCCGACGAGCTTAAGAC ATTCATCATTCGTCTACTGGAGAACACAGGGAGCTTGCTCCTCCCATTTGTGTACTCAGCTTCTATCTCACCAAATTTAC AAACCTGGCACAAGCTTGACAGAATACTGGATGCTACACTAACCAATGAAGTGGGTCGAAAGGCGTCGATCTCGCAAGGC TCTGCATTGATGAGGGTGGCTTCAGCTGTGTTTGCTGAGATCCCCTCTCTCAAAAACATGAGGGATGCTTCTCTAGGGTT AGGGACTGTGTCTTTTCACCATGCTCCTATATTTGGACTCACATGTGGAGCAATAGGATTTGATAGTGTTAGCTCTCAGA GAGCTTTCATGTTCATCACAATGAGAGATGTGATTTCAGCTGCTACAAGACTCAATTTGATAGGACCCCTTGGTGCAGCA TTGCTACAACATCAGATTGCTCCTGTTGCAGAAGCTATATTGGAAAAATGGATGAATCGCAATGTGGAGGAAGCATGCCA AACAATGCCTTTGCTAGACACTGTGCAGGGATGCCATGGTTACTTGTTTTCAAGGCTGTTTTCATCTTAAGAAGCAAAAT AGTATTAATGTTGCATTTAATATATTGTTGCACTTGTAAACTTTGTGTGAAATAATGTGCTCTTCATGTTTTCTTTTCTT TTGCTTGTTGAAACATTGTTTTGGAACTTCGAATAGTGCTAGCTCCTCACTTTGCTCTGGCTGATTTTATGTGTTGCACT CTGAATAGTTTTAGACATTCACTTTGATATTTTTTTCCCC
CDS sequence (LotjaGi1g1v0054200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGCAAATAAATGAAGGCCATGACAGACCTTGCACTGCAAACTCATTTTTACAATGGAGTCAATGGCAGCTGCTTGA TTCTCTTCTACCTACTGGTGGATTTGCGCATTCTCTTGGCCTGGAAGCAGCAGTTCAGTCCCACTTAGTGTCGGACTCCG ACGAGCTTAAGACATTCATCATTCGTCTACTGGAGAACACAGGGAGCTTGCTCCTCCCATTTGTGTACTCAGCTTCTATC TCACCAAATTTACAAACCTGGCACAAGCTTGACAGAATACTGGATGCTACACTAACCAATGAAGTGGGTCGAAAGGCGTC GATCTCGCAAGGCTCTGCATTGATGAGGGTGGCTTCAGCTGTGTTTGCTGAGATCCCCTCTCTCAAAAACATGAGGGATG CTTCTCTAGGGTTAGGGACTGTGTCTTTTCACCATGCTCCTATATTTGGACTCACATGTGGAGCAATAGGATTTGATAGT GTTAGCTCTCAGAGAGCTTTCATGTTCATCACAATGAGAGATGTGATTTCAGCTGCTACAAGACTCAATTTGATAGGACC CCTTGGTGCAGCATTGCTACAACATCAGATTGCTCCTGTTGCAGAAGCTATATTGGAAAAATGGATGAATCGCAATGTGG AGGAAGCATGCCAAACAATGCCTTTGCTAGACACTGTGCAGGGATGCCATGGTTACTTGTTTTCAAGGCTGTTTTCATCT TAA
Protein sequence (LotjaGi1g1v0054200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMQINEGHDRPCTANSFLQWSQWQLLDSLLPTGGFAHSLGLEAAVQSHLVSDSDELKTFIIRLLENTGSLLLPFVYSASI SPNLQTWHKLDRILDATLTNEVGRKASISQGSALMRVASAVFAEIPSLKNMRDASLGLGTVSFHHAPIFGLTCGAIGFDS VSSQRAFMFITMRDVISAATRLNLIGPLGAALLQHQIAPVAEAILEKWMNRNVEEACQTMPLLDTVQGCHGYLFSRLFSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 13 | 240 | 228 | 5.1E-99 | – | |
| Gene3D | 15 | 219 | 205 | 2.1E-29 | ||
| PIRSF | 16 | 240 | 225 | 5.4E-45 | ||
| Pfam | 50 | 196 | 147 | 2.7E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Nitrogen compound metabolic process | The chemical reactions and pathways involving organic or inorganic compounds that contain nitrogen. | ||
| Molecular function | Nickel cation binding | Interacting selectively and non-covalently with nickel (Ni) cations. |
Expression pattern of LotjaGi1g1v0054200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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