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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0054200 |
Transcript ID | LotjaGi1g1v0054200.2 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Urease accessory protein UreF; TAIR: AT1G21840.1 urease accessory protein F; Swiss-Prot: sp|Q9XHZ3|UREF_ARATH Urease accessory protein F; TrEMBL-Plants: tr|I3SDX7|I3SDX7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0054200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:7646967..7647686) extracted from Lotus japonicus Gifu genome v1.2.
ATGCAAATAAATGAAGGCCATGACAGACCTTGCACTGCAAACTCATTTTTACAATGGAGTCAATGGCAGCTGCTTGATTC TCTTCTACCTACTGGTGGATTTGCGCATTCTCTTGGCCTGGAAGCAGCAGTTCAGTCCCACTTAGTGTCGGACTCCGACG AGCTTAAGACATTCATCATTCGTCTACTGGAGAACACAGGGAGCTTGCTCCTCCCATTTGTGTACTCAGCTTCTATCTCA CCAAATTTACAAACCTGGCACAAGCTTGACAGAATACTGGATGCTACACTAACCAATGAAGTGGGTCGAAAGGCGTCGAT CTCGCAAGGCTCTGCATTGATGAGGGTGGCTTCAGCTGTGTTTGCTGAGATCCCCTCTCTCAAAAACATGAGGGATGCTT CTCTAGGGTTAGGGACTGTGTCTTTTCACCATGCTCCTATATTTGGACTCACATGTGGAGCAATAGGATTTGATAGTGTT AGCTCTCAGAGAGCTTTCATGTTCATCACAATGAGAGATGTGATTTCAGCTGCTACAAGACTCAATTTGATAGGACCCCT TGGTGCAGCATTGCTACAACATCAGATTGCTCCTGTTGCAGAAGCTATATTGGAAAAATGGATGAATCGCAATGTGGAGG AAGCATGCCAAACAATGCCTTTGCTAGACACTGTGCAGGGATGCCATGGTTACTTGTTTTCAAGGCTGTTTTCATCTTAA
CDS sequence (LotjaGi1g1v0054200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAAATAAATGAAGGCCATGACAGACCTTGCACTGCAAACTCATTTTTACAATGGAGTCAATGGCAGCTGCTTGATTC TCTTCTACCTACTGGTGGATTTGCGCATTCTCTTGGCCTGGAAGCAGCAGTTCAGTCCCACTTAGTGTCGGACTCCGACG AGCTTAAGACATTCATCATTCGTCTACTGGAGAACACAGGGAGCTTGCTCCTCCCATTTGTGTACTCAGCTTCTATCTCA CCAAATTTACAAACCTGGCACAAGCTTGACAGAATACTGGATGCTACACTAACCAATGAAGTGGGTCGAAAGGCGTCGAT CTCGCAAGGCTCTGCATTGATGAGGGTGTTGCTACAACATCAGATTGCTCCTGTTGCAGAAGCTATATTGGAAAAATGGA TGAATCGCAATGTGGAGGAAGCATGCCAAACAATGCCTTTGCTAGACACTGTGCAGGGATGCCATGGTTACTTGTTTTCA AGGCTGTTTTCATCTTAA
Protein sequence (LotjaGi1g1v0054200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQINEGHDRPCTANSFLQWSQWQLLDSLLPTGGFAHSLGLEAAVQSHLVSDSDELKTFIIRLLENTGSLLLPFVYSASIS PNLQTWHKLDRILDATLTNEVGRKASISQGSALMRVLLQHQIAPVAEAILEKWMNRNVEEACQTMPLLDTVQGCHGYLFS RLFSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 13 | 116 | 104 | 6.7E-61 | – | |
Gene3D | 13 | 156 | 144 | 3.6E-20 | ||
Pfam | 49 | 143 | 95 | 2.5E-7 | ||
PANTHER | 117 | 165 | 49 | 6.7E-61 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Nitrogen compound metabolic process | The chemical reactions and pathways involving organic or inorganic compounds that contain nitrogen. | ||
Molecular function | Nickel cation binding | Interacting selectively and non-covalently with nickel (Ni) cations. |
Expression pattern of LotjaGi1g1v0054200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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