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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0056400 |
| Transcript ID | LotjaGi1g1v0056400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein ETHYLENE INSENSITIVE 3; TAIR: AT3G20770.1 Ethylene insensitive 3 family protein; Swiss-Prot: sp|O24606|EIN3_ARATH Protein ETHYLENE INSENSITIVE 3; TrEMBL-Plants: tr|A0A0R4J4Z8|A0A0R4J4Z8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0056400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:7907886..7909718) extracted from Lotus japonicus Gifu genome v1.2.
ATGATGATGTTTGATGAAATGGGGTTTTGTGGCGATTTGGATCTGTTTTGTGGTTCCCTTGGAGAAGGGGATATTGCTGT CAAGCAAACTGAGTCAGAAGCTGTAGTTGATGATGATTATAGTGATGAAGAAATGGATGTGGATGAGCTTGAGAGGAGGA TGTGGAGGGATAAACTGCGTCTCAAGAGACTGAAAGAGCAAACTAAGGCTAAGGAAGGAATCGATGCAGCAAAGCAAAGG CAGTCTCAAGAACAGGCAAGGAGGAAAAAGATGTCAAGAGCACAAGATGGAATACTGAAGTACATGCTGAAAATGATGGA AGTTTGTAAGGCGCAAGGATTTGTGTATGGGATAATTCCTGAGAAGGGGAAACCGGTGACTGGCGCATCTGACAATCTTC GTGAATGGTGGAAGGATAAGGTTCGTTTTGATCGGAACGGTCCAGCTGCCATAGCCAAGTATCAAGCGGACCACGCGATC CCAGGAAGGAACGATGGATGCAATTCTGTTGGTCCAACTCCGCATACCTTGCAAGAGTTACAGGACACCACCTTGGGTTC CCTCTTGTCAGCACTGATGCAGCACTGTGATCCCCCTCAGAGGCGGTTCCCCTTGGAGAAGGGTGTTCCTCCACCATGGT GGCCCACAGGGAATGAAGAATGGTGGCCCCAAATTGGTTTGCCTAAAGATCAAGGCCCTCCACCTTACAAGAAACCTCAC GACCTGAAGAAGGCGTGGAAGGTTGGTGTTCTAACTGCAGTTATCAAGCACATGTCTCCTGATATCGCCAAGATTCGCAA GCTTGTGAGGCAGTCCAAATGCCTTCAAGATAAAATGACAGCCAAGGAAAGTGCAACCTGGCTCTCCATCATCAATCAAG AGGAGTCTTTGGCTCGAGAGCTTTATCCTAATTATTGCCCTCCATTATCCTCTGCTGGAGGTAGTGGGTCTTTGGTCATC AATGATTGCAGCGAGTATGACGTTGATGGTGCTGATGATGAGCCGAACTTTGATGTGGTGGAACGAAAACCTGAGAATAT CCATCCATCCAATCACGGGATGGAGAGAATGAGGGGAATGCTGCCAGTTCAGCAACCTTCTCATCCAATCAAGGGAGAGG TTGTCACAAACTTGGACTTCATTCGCAAGAGGAAGGTCTCTAGTGACTTTAACATGATCATGGATCAGAAAATTTACACA TGTGAACATCCTCAGTGCCCTTATAATGAAGTTCGCCTCGCCTTTCAAGACAGGTCTGCTAGAGACAATCATCAATTGAG TTGTCCGTATAGAAGTGGTGCTGCCGACTATGGTGGTCCTAATTTTCATGCTACTGAGATTAAGCCAGTTATATTCCCCC AGTCATTGGTTCAACCCAACACTTCAGTTCAGTCTGCTAATTTGGTTCCACCTTCATTCGATCTAACTGGGCTTGGAGTT CCAGAGGATGGCCAGAAAATGATCAGCGACCTTATGTCGATCTACGATACAAATGTTTTAGGAAACAGGAACTTAAGTTC CAATAACAACTCTGTAGCTGCAGAAAACCAAAACCTTTCTCAGCCCAGCATTCAGCGACAACAGGACAATTTCTTTTCTG GTCAAGGAATGGTGATGGATGGCAACTTCTTTGCGCGAGAGGACGGTCAATTTGACCGGTTCAAGGCTATGAACTCTCCC TTTGAAACCAACCACAACAACAACAACAATAATATCCACATGATATTTGGCTCTGCATGTGATTTGGCATCTTTTGATTT CAAGGAGGATCTACACGGAGTAGGGATGGACACACTTCACAAACAACCAGATGTTTCAATATGGTACCAGTGA
CDS sequence (LotjaGi1g1v0056400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGATGTTTGATGAAATGGGGTTTTGTGGCGATTTGGATCTGTTTTGTGGTTCCCTTGGAGAAGGGGATATTGCTGT CAAGCAAACTGAGTCAGAAGCTGTAGTTGATGATGATTATAGTGATGAAGAAATGGATGTGGATGAGCTTGAGAGGAGGA TGTGGAGGGATAAACTGCGTCTCAAGAGACTGAAAGAGCAAACTAAGGCTAAGGAAGGAATCGATGCAGCAAAGCAAAGG CAGTCTCAAGAACAGGCAAGGAGGAAAAAGATGTCAAGAGCACAAGATGGAATACTGAAGTACATGCTGAAAATGATGGA AGTTTGTAAGGCGCAAGGATTTGTGTATGGGATAATTCCTGAGAAGGGGAAACCGGTGACTGGCGCATCTGACAATCTTC GTGAATGGTGGAAGGATAAGGTTCGTTTTGATCGGAACGGTCCAGCTGCCATAGCCAAGTATCAAGCGGACCACGCGATC CCAGGAAGGAACGATGGATGCAATTCTGTTGGTCCAACTCCGCATACCTTGCAAGAGTTACAGGACACCACCTTGGGTTC CCTCTTGTCAGCACTGATGCAGCACTGTGATCCCCCTCAGAGGCGGTTCCCCTTGGAGAAGGGTGTTCCTCCACCATGGT GGCCCACAGGGAATGAAGAATGGTGGCCCCAAATTGGTTTGCCTAAAGATCAAGGCCCTCCACCTTACAAGAAACCTCAC GACCTGAAGAAGGCGTGGAAGGTTGGTGTTCTAACTGCAGTTATCAAGCACATGTCTCCTGATATCGCCAAGATTCGCAA GCTTGTGAGGCAGTCCAAATGCCTTCAAGATAAAATGACAGCCAAGGAAAGTGCAACCTGGCTCTCCATCATCAATCAAG AGGAGTCTTTGGCTCGAGAGCTTTATCCTAATTATTGCCCTCCATTATCCTCTGCTGGAGGTAGTGGGTCTTTGGTCATC AATGATTGCAGCGAGTATGACGTTGATGGTGCTGATGATGAGCCGAACTTTGATGTGGTGGAACGAAAACCTGAGAATAT CCATCCATCCAATCACGGGATGGAGAGAATGAGGGGAATGCTGCCAGTTCAGCAACCTTCTCATCCAATCAAGGGAGAGG TTGTCACAAACTTGGACTTCATTCGCAAGAGGAAGGTCTCTAGTGACTTTAACATGATCATGGATCAGAAAATTTACACA TGTGAACATCCTCAGTGCCCTTATAATGAAGTTCGCCTCGCCTTTCAAGACAGGTCTGCTAGAGACAATCATCAATTGAG TTGTCCGTATAGAAGTGGTGCTGCCGACTATGGTGGTCCTAATTTTCATGCTACTGAGATTAAGCCAGTTATATTCCCCC AGTCATTGGTTCAACCCAACACTTCAGTTCAGTCTGCTAATTTGGTTCCACCTTCATTCGATCTAACTGGGCTTGGAGTT CCAGAGGATGGCCAGAAAATGATCAGCGACCTTATGTCGATCTACGATACAAATGTTTTAGGAAACAGGAACTTAAGTTC CAATAACAACTCTGTAGCTGCAGAAAACCAAAACCTTTCTCAGCCCAGCATTCAGCGACAACAGGACAATTTCTTTTCTG GTCAAGGAATGGTGATGGATGGCAACTTCTTTGCGCGAGAGGACGGTCAATTTGACCGGTTCAAGGCTATGAACTCTCCC TTTGAAACCAACCACAACAACAACAACAATAATATCCACATGATATTTGGCTCTGCATGTGATTTGGCATCTTTTGATTT CAAGGAGGATCTACACGGAGTAGGGATGGACACACTTCACAAACAACCAGATGTTTCAATATGGTACCAGTGA
Protein sequence (LotjaGi1g1v0056400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMMFDEMGFCGDLDLFCGSLGEGDIAVKQTESEAVVDDDYSDEEMDVDELERRMWRDKLRLKRLKEQTKAKEGIDAAKQR QSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVTGASDNLREWWKDKVRFDRNGPAAIAKYQADHAI PGRNDGCNSVGPTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVPPPWWPTGNEEWWPQIGLPKDQGPPPYKKPH DLKKAWKVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLSIINQEESLARELYPNYCPPLSSAGGSGSLVI NDCSEYDVDGADDEPNFDVVERKPENIHPSNHGMERMRGMLPVQQPSHPIKGEVVTNLDFIRKRKVSSDFNMIMDQKIYT CEHPQCPYNEVRLAFQDRSARDNHQLSCPYRSGAADYGGPNFHATEIKPVIFPQSLVQPNTSVQSANLVPPSFDLTGLGV PEDGQKMISDLMSIYDTNVLGNRNLSSNNNSVAAENQNLSQPSIQRQQDNFFSGQGMVMDGNFFAREDGQFDRFKAMNSP FETNHNNNNNNIHMIFGSACDLASFDFKEDLHGVGMDTLHKQPDVSIWYQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 610 | 610 | 0.0 | – | |
| PANTHER | 1 | 610 | 610 | 0.0 | ||
| Coils | 47 | 67 | 21 | - | – | |
| Pfam | 48 | 295 | 248 | 4.0E-130 | ||
| MobiDBLite | 70 | 91 | 22 | - | – | |
| Gene3D | 166 | 306 | 141 | 2.2E-71 | ||
| SUPERFAMILY | 174 | 298 | 125 | 1.83E-62 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
Expression pattern of LotjaGi1g1v0056400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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