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LotjaGi1g1v0059000.1

Overview

Field Value
Gene ID LotjaGi1g1v0059000
Transcript ID LotjaGi1g1v0059000.1
Lotus japonicus genome version Gifu v1.2
Description FBD-associated F-box protein; TAIR: AT1G78750.1 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q9ZV93|FDL10_ARATH F-box/FBD/LRR-repeat protein At1g78750; TrEMBL-Plants: tr|A0A072ULT5|A0A072ULT5_MEDTR F-box/RNI/FBD-like domain protein; Found in the gene: LotjaGi1g1v0059000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:8276070..8277781) extracted from Lotus japonicus Gifu genome v1.2.

GAAAGATATGATCAGCATCTTACCTGATTGTATTCTTCATCTCATTCTTTCTTTACTGCCTACCAAAGATGCTATTCGAA CTTCCATTTTGGCTAAAAGGTGGAAGTACTTGTGGACCTTCTTATCTTCCTTTGATTTTAGAAGTTATTTGTTTAGGGCC AGCATGAAAGAAGACCAAAAACAGAAATCTGCATGTTGCCTTCTAGATCAAGTGAACAGACTACTTTATCATTCTAATTG TGTAAAAAAGCTGTGTGTCTTCTGGAGTTTCCATTGATGTGGATGGAGTCAATTCTCTTATATCTTCTGCAGTGAAGCAC AAAATTGAAGTGCTTAAGCTTTTGGTACATGTAAAGCCTTTGTTTGTGTTACCTAACTTCTGCTCAGCTTCTGATACATT GAATAAGCTGGTTTTAGAACCACACTGTGTTCTAGATGTTGCTAGTGGAATTTATTTCTCTAGCCTGAAGACATTAAAGC TCTCATGTGTTACCTTTGCAAATGAGAAGTCAGTTCAACAGCTTTTCTCTGGGTGCCCTGTCCTACAAAAGTTAAGCTTG TGTAATTGTAATTGGTGTAACATCAAGCAGATCAGCATTACAACTCCCACATTAAAGATATTAACCATCTTTTCAGGCCT CAGTGTTTATATGAATTCTACAGTCAAGATTGATGCTGTGAATCTTTTATATTTCAGTTACACAGGCTATTCAATGGTAG ATTTTGTCCTTGTTAACCTGGCCTCCATAGTTGATGCACGTGTTGATTGTTTCTATCCATTATTTGGACATACTATTGGT ACCCCTGTATCTAAACTATTGGGTGGACTTGGTAGCATCAAATCTCTTAGACTATCAAATGACACTCTTCAGGCATGTTT AACTGCTTCCTAATCATCATTTTCTTAACTGTATGACAGCTATTGATCATGTTTGCCTATATCTACATGAACGTATTATA TTTACTTCATATTCTAAATAGGCTTCAGGCCAACAGAGTTGGTTTAACAATAAATTTACTTTTCTTTCTTTTACTAGTGT CTTTTGCTTGCAAAATATACGCGCCATCTCCTTCCTATGTTCAACAATTTGACACATCTTCACGTCGATTTGGGAGCTTC CGAGTTCACTAGTGAAGCACTAATGAACATTCTCCAAAAGACACCTAAATTGGAAGTTCTTCATATTCCACTGGTAATTC TTTTATCCTGCTTCAATACTTGCATCTGCCATGTTTCAAGGCTAACAGTAGTATTGTTACTGTCCATTGACTTGTTTAAC CGGCAGATCTGCTTGGATGCTCAAGACTGGATATTGAACTCAGTACCTTGCTGTTTCAAATATAGTCTCAAATTATTTTG TATTTCACATTTTCGTGGGCGTGTAGCTGAAGTCCAGTTGCTGAAGTTTTTTTTAGAAAATGCCGCAGTTTTAGGGGAGA TCTGGATATTCTGTTCGAAAACTTTATCTGTTAATTTGAAGAAGCAGGCTGAGGTGAGCAATCAGTTGCAACCTGTATGC CCAGGAACTTGTGTCATCAAGTTTCAGTAAATCTTCATTCTTTCTTTTACTTTTTGCAAAAAGGGATTCATTTATGTATG GTGTAACTTCATTCTAAAGCTTGAATTGTTGTTAGCTGAATTCGCTTTACATGGTTAGACTAACAAGAGTGGTTTATGGG ACATGCACTTTACGAAATGATTTTATCATTGG 

CDS sequence (LotjaGi1g1v0059000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAATTCTACAGTCAAGATTGATGCTGTGAATCTTTTATATTTCAGTTACACAGGCTATTCAATGGTAGATTTTGTCCT TGTTAACCTGGCCTCCATAGTTGATGCACGTGTTGATTGTTTCTATCCATTATTTGGACATACTATTGGTACCCCTGTAT CTAAACTATTGGGTGGACTTGGTAGCATCAAATCTCTTAGACTATCAAATGACACTCTTCAGTGTCTTTTGCTTGCAAAA TATACGCGCCATCTCCTTCCTATGTTCAACAATTTGACACATCTTCACGTCGATTTGGGAGCTTCCGAGTTCACTAGTGA AGCACTAATGAACATTCTCCAAAAGACACCTAAATTGGAAGTTCTTCATATTCCACTGATCTGCTTGGATGCTCAAGACT GGATATTGAACTCAGTACCTTGCTGTTTCAAATATAGTCTCAAATTATTTTGTATTTCACATTTTCGTGGGCGTGTAGCT GAAGTCCAGTTGCTGAAGTTTTTTTTAGAAAATGCCGCAGTTTTAGGGGAGATCTGGATATTCTGTTCGAAAACTTTATC TGTTAATTTGAAGAAGCAGGCTGAGGTGAGCAATCAGTTGCAACCTGTATGCCCAGGAACTTGTGTCATCAAGTTTCAGT AA 

Protein sequence (LotjaGi1g1v0059000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MNSTVKIDAVNLLYFSYTGYSMVDFVLVNLASIVDARVDCFYPLFGHTIGTPVSKLLGGLGSIKSLRLSNDTLQCLLLAK YTRHLLPMFNNLTHLHVDLGASEFTSEALMNILQKTPKLEVLHIPLICLDAQDWILNSVPCCFKYSLKLFCISHFRGRVA EVQLLKFFLENAAVLGEIWIFCSKTLSVNLKKQAEVSNQLQPVCPGTCVIKFQ 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
TMHMM 12 34 23 -
Gene3D 20 192 173 2.1E-5
PANTHER 55 204 150 3.2E-17
PANTHER 55 204 150 3.2E-17
Pfam 138 176 39 3.6E-11

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0059000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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