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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0059000 |
Transcript ID | LotjaGi1g1v0059000.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | FBD-associated F-box protein; TAIR: AT1G78750.1 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q9ZV93|FDL10_ARATH F-box/FBD/LRR-repeat protein At1g78750; TrEMBL-Plants: tr|A0A072ULT5|A0A072ULT5_MEDTR F-box/RNI/FBD-like domain protein; Found in the gene: LotjaGi1g1v0059000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:8276070..8277781) extracted from Lotus japonicus Gifu genome v1.2.
GAAAGATATGATCAGCATCTTACCTGATTGTATTCTTCATCTCATTCTTTCTTTACTGCCTACCAAAGATGCTATTCGAA CTTCCATTTTGGCTAAAAGGTGGAAGTACTTGTGGACCTTCTTATCTTCCTTTGATTTTAGAAGTTATTTGTTTAGGGCC AGCATGAAAGAAGACCAAAAACAGAAATCTGCATGTTGCCTTCTAGATCAAGTGAACAGACTACTTTATCATTCTAATTG TGTAAAAAAGCTGTGTGTCTTCTGGAGTTTCCATTGATGTGGATGGAGTCAATTCTCTTATATCTTCTGCAGTGAAGCAC AAAATTGAAGTGCTTAAGCTTTTGGTACATGTAAAGCCTTTGTTTGTGTTACCTAACTTCTGCTCAGCTTCTGATACATT GAATAAGCTGGTTTTAGAACCACACTGTGTTCTAGATGTTGCTAGTGGAATTTATTTCTCTAGCCTGAAGACATTAAAGC TCTCATGTGTTACCTTTGCAAATGAGAAGTCAGTTCAACAGCTTTTCTCTGGGTGCCCTGTCCTACAAAAGTTAAGCTTG TGTAATTGTAATTGGTGTAACATCAAGCAGATCAGCATTACAACTCCCACATTAAAGATATTAACCATCTTTTCAGGCCT CAGTGTTTATATGAATTCTACAGTCAAGATTGATGCTGTGAATCTTTTATATTTCAGTTACACAGGCTATTCAATGGTAG ATTTTGTCCTTGTTAACCTGGCCTCCATAGTTGATGCACGTGTTGATTGTTTCTATCCATTATTTGGACATACTATTGGT ACCCCTGTATCTAAACTATTGGGTGGACTTGGTAGCATCAAATCTCTTAGACTATCAAATGACACTCTTCAGGCATGTTT AACTGCTTCCTAATCATCATTTTCTTAACTGTATGACAGCTATTGATCATGTTTGCCTATATCTACATGAACGTATTATA TTTACTTCATATTCTAAATAGGCTTCAGGCCAACAGAGTTGGTTTAACAATAAATTTACTTTTCTTTCTTTTACTAGTGT CTTTTGCTTGCAAAATATACGCGCCATCTCCTTCCTATGTTCAACAATTTGACACATCTTCACGTCGATTTGGGAGCTTC CGAGTTCACTAGTGAAGCACTAATGAACATTCTCCAAAAGACACCTAAATTGGAAGTTCTTCATATTCCACTGGTAATTC TTTTATCCTGCTTCAATACTTGCATCTGCCATGTTTCAAGGCTAACAGTAGTATTGTTACTGTCCATTGACTTGTTTAAC CGGCAGATCTGCTTGGATGCTCAAGACTGGATATTGAACTCAGTACCTTGCTGTTTCAAATATAGTCTCAAATTATTTTG TATTTCACATTTTCGTGGGCGTGTAGCTGAAGTCCAGTTGCTGAAGTTTTTTTTAGAAAATGCCGCAGTTTTAGGGGAGA TCTGGATATTCTGTTCGAAAACTTTATCTGTTAATTTGAAGAAGCAGGCTGAGGTGAGCAATCAGTTGCAACCTGTATGC CCAGGAACTTGTGTCATCAAGTTTCAGTAAATCTTCATTCTTTCTTTTACTTTTTGCAAAAAGGGATTCATTTATGTATG GTGTAACTTCATTCTAAAGCTTGAATTGTTGTTAGCTGAATTCGCTTTACATGGTTAGACTAACAAGAGTGGTTTATGGG ACATGCACTTTACGAAATGATTTTATCATTGG
CDS sequence (LotjaGi1g1v0059000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATTCTACAGTCAAGATTGATGCTGTGAATCTTTTATATTTCAGTTACACAGGCTATTCAATGGTAGATTTTGTCCT TGTTAACCTGGCCTCCATAGTTGATGCACGTGTTGATTGTTTCTATCCATTATTTGGACATACTATTGGTACCCCTGTAT CTAAACTATTGGGTGGACTTGGTAGCATCAAATCTCTTAGACTATCAAATGACACTCTTCAGTGTCTTTTGCTTGCAAAA TATACGCGCCATCTCCTTCCTATGTTCAACAATTTGACACATCTTCACGTCGATTTGGGAGCTTCCGAGTTCACTAGTGA AGCACTAATGAACATTCTCCAAAAGACACCTAAATTGGAAGTTCTTCATATTCCACTGATCTGCTTGGATGCTCAAGACT GGATATTGAACTCAGTACCTTGCTGTTTCAAATATAGTCTCAAATTATTTTGTATTTCACATTTTCGTGGGCGTGTAGCT GAAGTCCAGTTGCTGAAGTTTTTTTTAGAAAATGCCGCAGTTTTAGGGGAGATCTGGATATTCTGTTCGAAAACTTTATC TGTTAATTTGAAGAAGCAGGCTGAGGTGAGCAATCAGTTGCAACCTGTATGCCCAGGAACTTGTGTCATCAAGTTTCAGT AA
Protein sequence (LotjaGi1g1v0059000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNSTVKIDAVNLLYFSYTGYSMVDFVLVNLASIVDARVDCFYPLFGHTIGTPVSKLLGGLGSIKSLRLSNDTLQCLLLAK YTRHLLPMFNNLTHLHVDLGASEFTSEALMNILQKTPKLEVLHIPLICLDAQDWILNSVPCCFKYSLKLFCISHFRGRVA EVQLLKFFLENAAVLGEIWIFCSKTLSVNLKKQAEVSNQLQPVCPGTCVIKFQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
TMHMM | 12 | 34 | 23 | - | – | |
Gene3D | 20 | 192 | 173 | 2.1E-5 | ||
PANTHER | 55 | 204 | 150 | 3.2E-17 | – | |
PANTHER | 55 | 204 | 150 | 3.2E-17 | – | |
Pfam | 138 | 176 | 39 | 3.6E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0059000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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