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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0067100 |
| Transcript ID | LotjaGi1g1v0067100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT1G67020.1 transmembrane protein; Swiss-Prot: sp|A6QPB3|COHA1_BOVIN Collagen alpha-1(XVII) chain; TrEMBL-Plants: tr|A0A1J7G409|A0A1J7G409_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0067100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:9201895..9209827) extracted from Lotus japonicus Gifu genome v1.2.
CCACCCAGGATAAAGTAACGCCACGTCGCCAAGGCTTCGTGTAAGTCTGGCTATCAAGGTAGGTAGGCTATCCACCCAGG GAAAAGCAAGACTACGTCATCAAGGCTTCTTGACGCCTAGCCTTAGAGGGCCGTGGACCATTAGGGTACTGAGCCGTCTA GATGACTTGAGTAGGTCTAGCTATCGAGCTAGGTCATCCACCTAGGGCAAAGCAAGGCCACTATTAGACATAGAGAGGTC TAACTCAACCCAAAAGCTAGCTCAAGAGTTGAGGGTTGCGCTATGATAGGGTCAAGAGGATGCAGAAGCCTCTTATCAGT CAAGTCTATGTTAGATGCAATAAGGGGAACTAGCTTAGTGCTTAATAATTGGCTTAGTGCTTAATAAACCTTGTGGTTAG AGAGACTATAAATAAGAACCCATGGTTCATAGTTAGTTAGCTTTTGCATATTGTTGGGTTGTTGGTTACAGAGCTTCAAC TGAATTGGGATTCAGTTGAGCTTCTCTGTTTCTGTTATCTTCTTCTTCCTCAGGATTCTTCTTCTACCAAGCTTTCATAT ACAGATATTGTTCCAGTTCTGCATTTCCCTCTGAGTTTCTTCTATCTTTGTTAGCTTTTGATTTGCTAGTGCTATCACTG GTATCAGAGCACCGATTCGGTGCCCTGAATTCCACGATTTCCTGAAGCTGCGTATGAAGACTCGTAGCATGGCGCGCAAC GTTGAGGACTGGCAGCAAGAGCGTGAGGAGATGCGAATTCGATTGGAGTTAGCAGAAGCGCTTGCGAAGAAGCATGAGGA ACAAATCGCTGAAATCGTGGCTAGGTTTGGCCACAATCGCGATCGCACCGGAGAACACTCTCAGGAAGGAATCGGTAGCA GTGGTGAGCGAGTGGATGATACGAATCGCAAGGAGAAATGGAGGAAACTGGAGATTCCGATTTTCGCCGGCGAAGACGCG TTTGGATGGACGCATCGATTGGAAAGGTACTTCTTGTTGAAAGAAGTTAACGAAGAGAAGATGCAAGCAACAGTTATGGC TCTTGAAGGAAAAGCTCTGAGCTGGTTCCAATGGTGGGAGAGGTGCAATCCGAACCTTAACTGGCAAGCCTTCAAGCTAG CTGTTGTACGCAGGTTTCAACCTTCCATGGTGCAAAATCCATTTGAACAACTTCTGGCTCTCAAGTAATCAGGAACTGTT GAAGAATTTGTGGAGCAATTCGAAAAGTTTGTGGGAGCATTGAAGACTATAGATCAAGAATTTGTTAGAGGAATCTTCTT GAATGGCCTCAAGGAAGAGTTGCAGGCAGAGGTAAAGCTTTATGAATTGAATTCTTTGTCAGAAATTATTCAAAAAGCTT TGTTGATAGAGCAAAAGAATTTGTTAGTCAATAGGAAAACTGGTTTTGGTTATGCAAGATCTTCTGGAAATTCCAGAGCC TATCCTTATACCAAAACTGTAACTGTAGAATCCAAATAAGGTTTGGATAAGAAAACTGACTCTGTTGTGAGTAATGGTGC TCAGAGTAGTACTGGACAAAATCTGAGTACAGACAGTGTCAGGAACAGGGGAGAATTTAGGCACTTAACTGGTGCTGAGG TCAGAGAAAAGAGGGAAAAAGGTCTCTGTTTCAGGTGTGATGAGCCCTATAATAGGGAGCATAGATGTAAAAATAAGCAA TTCAGAATGATAATATTGGATGAAGATGAGGAGGAGGATTTAGAGGTTTTTGAAGATTGCATGCATTCTCTGAAATCCTT ACATTTGTCATTGAGTTCCATGTCAGGGTTTACAACCACCAGATCTTGGAAGGTAGAAGGGTGGTTGAAGGAAAATTCTG TGGTAATCTTGATTGACTGTGGAGCCTCCCACAACTTTATTGCCACTGATTTGGTTGACAGATTTCAATTGCCAGTTTAG GACACTCCTTCATATTTTGTGGAGGTTGGGGATGGTCACAAGGTAAGGTGCAGGGGGAAATGTGCTCAGTTGCAGCTACA GATGCAGCAGTTGGAAGTGGTACAGGATTTATACCTCTTCACTTTAACTGGAGTAGATATAGTTTTGGGGTTGGATTGGT TAGCTGGCTTAGGGGAGGTCAAAGCTGACTTTGGGAAGCTAGAGCTGACAGTCAAACAGGGAGACCAGTTCATCAAGATA ATTGGAAATCCAGCTTTGGCCAAAACTGCAGTATCATTTGGAGCACTGATGCAAGTCCTCAAGGAAGAAGGAGAGGGGTT GCTGATTCAGTGTGAACCACACAAGGGAGAAGAAGAGATTCAGAGGGTAGTTTCCACTTCTATTAAGGACTTGTTAGTTT CTTTTGAGGATGTGTTTTCAGACCCTATGGAACTCCCTCCTACTAGAAGGCATGACCATGCTATTCATCTTCATGAAGGA GCTGTCATCCCTAATTTGAGGCCCTACAAGTACCCTCACTACCAAAAAACAGAAATTGAGAGATTGGTAGGGGAAATGTT GGATTCTGGGGTGATAAGACACAACATCAGCCCATATTCTAGCCCTATTATCCTTGTCAAGAAAAAAGATGGAGGTTGGC GGTTCTGTGTTGATTATAGAGCCTTGAATAAAATTACCATACCTAATAAATTTCTCATTCCTATCATAGAAGAGCTTCTT GATGAGATAGGGGGAGCTACTGTTTTTACTAAGCTGGATCTGAAATCTGGTTATCACCATATCAGAATGAGAGATTCTGA CATTGAAAAGACAGCCTTCAGAACTCATGAAGGCCACTACGAGTTTGTGGTGATGCCTTTTGGCCTCACCAATGCTTTCA AGCCCTCATGAATGAAGTTTTGCGGCCATATCTGAGGAAGTATGCTCTAGTTTATTTTGATGACATCCTGGTGTACAGCA AGGATGAGACATCTCATGTGACACACTTGAAGCAGGTTTTGGAGGCTTTGAGGTCTAATTCCTTGAAGGCTAACAAGAAG AAGTGCAGCTTTGCTCAACCTAGACTAGAATACTTAGGCCACATAATTTCTGGATCTGGGGTAGAAGCTGATAAGTCCAA AGTTGCAGCCATGAGTTCTTGGCCAGTTCCAAAGGACTTGAAAAGTCTAAGGGGTTTTCTGGGGTTGATTGGCTACTACA GAAGATTTGTGCAAGGATATGGTAAAATTGCCAAGCCATTGACTGAGTTACTAAAAAAGGATAGCTTTGTTTGGACTTCA GAATCTACAACAGCTTTTGAGACCTTGAAAGCTGCTATGATAAATTTACCTTTGCTGGCAGTCCCTGATTTTACTAAAAC ATTTGTCCTTGAAACTGATGCATCTAGTAAAGGGGTGGGGGCTGTACTAATGCAGGAGGGTAGGCCTTTGGCTTTTTGGA GCAAGGGTCTTTCACCAAGGGCTCAGCTGAAATCTGTTTATGAAAGGGAGCTTATGGCTTTGGTTCAAGCAGTTCAAAGG TGGAAGCATTACTTGATGGGGAGACATTTCATAATCAAAACTGATCAAAGAAGTTTAAAATTTCTCACTGACCAGAGGCT CTTCAGTGAGGAACAATTCAAGTGGGCAGTGAAGCTTATTGGGCTGGATTTTGAGATACAATTTAAACCTGGCAAAGAGA ATCCAGTGGCAGATGCTTTCTCTCGCAAAGGCATGTATTCAGCAATCTCTGTGATCCAAATGGATGATGGAGAAGATTGG TTCCAAGAGGTGCAGCAAGAACCTAAATGGAAGAAGGTCATTCAGGACTTGGCTGGAGATCCAAATTCTCATCCGGGTTT TCAATATCAGGCTGGCAGATTGCTTTATAAGGGCAGGCTAGTCTTATCTAAGTCTTCTAATAGACTTCCCTTGATCTTAG CTGAATGCCATGATAGTGTTTCAGGGGGACATTCTGGCTTCTTCAGGACCTTTAAGCGAGTTTCTAGTTTTTTCTATTGG GAGGGAATGATGACATATGTAAAACAGTATGTGGAAGCTTGTGATGTGTGTCAGAGATACAAATACTCTACCTTGGCTCC TGGAGGTTTGTTGCAGCCTTTTCCTATTCCTACTCAAGTATGGCAGGATATATCAATGGATTTTATTTCTGGCCTACCTA AATCCAGGGGCAAGGATACTATCTTTGTGGTTGTGGATAGATTGACAATGTATGCTCATTTCTTTGCTTTGGGGCATCCT TTTTCTGCCAAGGATGTGACAGCTTTATTTGTTAAGGAGGTGGTTAAGCTTCATGGGTTTCCAGCTTCTATAGTTTCTGA CAGGGACCCTTTATTCCTTAGCCAATTTTGGCAAGAGATGTTCAGGTTGGCAGGTACTCAGTTAAAATACAGTACAGCTT ACCATCCTCAGTCAGATGGCCAAACTGAGGTGGTCAATAGAAGTCTGGAAACATATCTCAGGTGTTTTGTTGGTCCCAAA CCCAAGATGTGGGTGGATTGGCTGTCTTGGGCAGAGTTTTGGTTTAACTCTACATACAATGTTTCTGCTGGCATGACCCC TTTCAAAGCTCTCTATGGGAGGGACCCTCCAACACTCATCAAAGGTTCTACTTTCACTTCTAAGGTGGAGGCAGTTAACC AATTTCTTACTGCAAGGGATTTGATTTTACAGGAGCTTCAGCATAATTTACTGAAGGCTCAGGAGTTAATGAAGGTCCAA GCCAATAAGCATCGCAGACCAGTGGAGTTTGCAGTTGGTGATTGGGTATTTCTCAAGCTTCAGCCTTATAAGTTGAGGTC TTTGGCTCACAGGCCTGTGGCCAAACTGTCCCCTAAGTTCTATGGTCCTTACAAGGTTCGTGAGCGCATTGGATCAGTAG CCTATAAGTTGGAGCTTCCAGCTCATGCTAAGATCCATCCGGTGTTCCATGTTTCTTTACTGAAGAAAGCTTCCCATTCT GTTCCACATCCTCAACCATTACCTCCTATGCTTTCTGAGGAACTGGAACTTCAGGTGCAGCCTGCTGAGATTTTGCAGTG GAGGGAAGATTCTGAGGGCAACCTGGAGGTCTTAGTTCACTGGGACAACTTACCTTCTTGTGAGGACTCTTGGGAAGTTG CTGATCAGCTGCAGAAGGCTTTCCCTCAATTTCCCCTTGAGGACAAGGTGGCTCTTTTGGGGGGGAGTATTGATAGGGTC AAGAGGATGCAGAAGCCTCTTATCAGTCAAGTCTATGTTAGACGCAATAAGGGGAACTAGCTTAGTGCTTAATAATTAGC TTAGTGCTTAATAAACCTTGTGGTTAGAGAGACTATAAATAAGAATCCATGGTTCATAGTTAGTTAGCTTTTTCATATTG TTGGGTTGTTGTAACTGAATCAGGGATTCAGTTAGGTAGTTACAGAGCTTCAACTGAATTGGGATTCAGTTGAGCTTCTC TGTTTCTGTTATCTTCTTCTTCCTCAGGATTCTTCTTCTACCAAGCTTTCATATACAGATATTGTTCCAGTTCTGCATTT TCCTCTGAGTTTCTTCTATCTTTGTTAGCTTTTGATTTGCCAGTGCTATCACGCTACCCTTTATAAACACTTGTTTGACC ATATATCTAGCCAATGTGGGACTTTTAACACACCCTCTCACGTCCAGGGATGAACATCTAGAGCGTATAATGGAGGCCTA CTCAACTTAAAAGCTAGCTCAAGAGTTGAGAGTTGTTATACCCTTTATAAACACTTGTTTGGTTATATCTCTAGGCAATG TAAGACTTCTAACAGCCACGTCGCTAAGGCTTCTTGACGCCTAGGCTTGGAGGGTTGTGGGCTAATGGGGTACGTCCATA TGACTTGTGTAAGTCTGGGTATATATCAAGGTAAGCCATCCGCCTAGGTCAAAGCAAGGCCACATGCCAAGGCTTCTTGG CTCCTACCCTTGGAGGGTTGCAGACCCCTAGAGAGTTGGGCTGACCAGGTTATAAATGCTGCACCGGGATCTTAGCATGC TGACCAGTTTCTTGCTTGCTTGAGTCATTTCACACTCTATCCGCACTTATACCAAGATAGATAGTCTCCCTTTAGGCACT GATAAAATAACACCATGAAAGACTTCATTCACCAGCTTCACCAATGAGCAGAAGAATACTACCTTAAAATATTCATCTTC TCCCACTCCATCTTTGAAACTACTACTGTTCTCTTCATATTCATTTTCCTATAAAGCCACTGAGCAGCCAAATGCGAAAA ACAGAACCACCAAACCACCTTGACCTTCCATCAAACACATCAAAAGTGGCGAACCACTCACCGAACACCCAAATGAGAAC TGATTTCGCCACCCTCTAAATTACAGCAAAACTTTAAATTTGTCACTAACACTAGTTAGGAACTCTGGTTGCAATTTTTT TATTAAAAACTTGCTAGTATACATAAGTTACAAGAAATTGAAATCCTATGTCCTCATTTAAAGTCACATTATCTGTCATT ACTATTAAATTATGTCATGTCATTTAAAAATCTAGCAGCCTAATGCACATTGTACATACCTTGCTTCCATTGGCGATAAA CACTGAACATATCTGTATCAATAATCTTATCCGTTGGTCGACCCCCGCTACCCGTGAATGCTGCAAAAGCTCTTTTCATG AGTGCCTTCAAAAGCTGACTACTCCATTGGTGCTTCTTCTTTTCTATCTTCACATCCTTTAACTCTTCAAAAGTAGATCC ATGATGCAAATGAATTATAATGAAAATCGGTTGTGTTAATTAACAATATATCATGTGTAACATATCAACATTAAATTGAA GCAGCACTTAGATCAATTAAGAAACACATACCAACTCCTGAAAGACCAAGAATGTGCACATATGCAGACTTGACAAATTG ATGAAATGTTTCATAATTTCGTGGCAAAAATCCAACCGGATATTCTTTTGATATAAACGGATAGTGAGCTTCGTTTCTAT TGTTATTGGTCTGTTTATTGTTTGATGGGTTTTCTGTGTCATGATGATTATTCCCCTGGACAATTTTGCCTGACCAATGG GATACAAAAGGGAAAAATGTTAAACACAAGTAATTGATGACATATGATAAAGTAATAAAATTTGAAAAAGTTAAGGAAGA TGTATGGATAGCATGAGAATCTAGGCTACACGTACCTTGTGGAATGGCAAACTTTAAGAATGCAGAAAATAGGTCAAATA ATGTGGTGTAGTTCTTTGGGAAATTCATTTTATCAGAACCTGACAGCTCCATCTTCCTCAAACTCCTCTTCATTGCTTTT TCTGCATCCAGTGGTTCCACAAGTATACCTTTACCAAAATATATTATAGTTAATGCATGGATTTGCCAAAAGCACGTTCG AACTGTCTTGGAATATGCACGAACAGAAATACCAACACACATGAAATATATTGTGTACGACTTAATTCATAGAATGTTGG TACTAACTATCAATGTGTAGTTTTTTAACATTGCAAAGCTTGGCATGCATGAGAGGCGCGCAACAATGGCTATTATTGGG GTAATATTGATGTCAATGATTGTCCAATGCATTTCTATTGAGAATGGTTGTTTCTCAAGCTCTCATTTTTATGAATAAAA TCTTTTTCTTTCAAAAAAATATTGGTATTCATGTGTGTTACTTACAATGGTACAGGATTCGCTTCCACCAGGAAAGGTTG CTTGCACTTTTGAAGGCTGAGGGCCTAGTGGCAAGGACTTTGAGAGGAGTTGATTCCTCGCTATTCAAATGTGTGCTCAG AAAATCATAATAGTGAACTATTATCACAGCCAAATCTGTTGCAGCATAGATAGAAATAGCAATACATATTCAGAATGCAA TAAATATGGATTAAAGTATTTATTTGGATTTCTGTTTGCGACATTTAAAATCACTACAAATGATAAATTAGAACAAATTT TTTTTTAGCTAAATGTAGCAAACATTCAAACACACTAAGTTCTCTATAACTATAACAGAATTGAAAGAGTGTGAATGAAG TTTGTGATCTGAT
CDS sequence (LotjaGi1g1v0067100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGACTCGTAGCATGGCGCGCAACGTTGAGGACTGGCAGCAAGAGCGTGAGGAGATGCGAATTCGATTGGAGTTAGC AGAAGCGCTTGCGAAGAAGCATGAGGAACAAATCGCTGAAATCGTGGCTAGGTTTGGCCACAATCGCGATCGCACCGGAG AACACTCTCAGGAAGGAATCGGTAGCAGTGGTGAGCGAGTGGATGATACGAATCGCAAGGAGAAATGGAGGAAACTGGAG ATTCCGATTTTCGCCGGCGAAGACGCGTTTGGATGGACGCATCGATTGGAAAGGTACTTCTTGTTGAAAGAAGTTAACGA AGAGAAGATGCAAGCAACAGTTATGGCTCTTGAAGGAAAAGCTCTGAGCTGGTTCCAATGGTGGGAGAGGTGCAATCCGA ACCTTAACTGGCAAGCCTTCAAGCTAGCTGTTGTACGCAGGTTTCAACCTTCCATGGTGCAAAATCCATTTGAACAACTT CTGGCTCTCAAGTAA
Protein sequence (LotjaGi1g1v0067100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKTRSMARNVEDWQQEREEMRIRLELAEALAKKHEEQIAEIVARFGHNRDRTGEHSQEGIGSSGERVDDTNRKEKWRKLE IPIFAGEDAFGWTHRLERYFLLKEVNEEKMQATVMALEGKALSWFQWWERCNPNLNWQAFKLAVVRRFQPSMVQNPFEQL LALK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 164 | 161 | 1.2E-19 | – | |
| PANTHER | 4 | 164 | 161 | 1.2E-19 | – | |
| Coils | 10 | 44 | 35 | - | – | |
| MobiDBLite | 48 | 72 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0067100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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