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LotjaGi1g1v0067100.1

Overview

Field Value
Gene ID LotjaGi1g1v0067100
Transcript ID LotjaGi1g1v0067100.1
Lotus japonicus genome version Gifu v1.2
Description Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT1G67020.1 transmembrane protein; Swiss-Prot: sp|A6QPB3|COHA1_BOVIN Collagen alpha-1(XVII) chain; TrEMBL-Plants: tr|A0A1J7G409|A0A1J7G409_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0067100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:9201895..9209827) extracted from Lotus japonicus Gifu genome v1.2.

CCACCCAGGATAAAGTAACGCCACGTCGCCAAGGCTTCGTGTAAGTCTGGCTATCAAGGTAGGTAGGCTATCCACCCAGG GAAAAGCAAGACTACGTCATCAAGGCTTCTTGACGCCTAGCCTTAGAGGGCCGTGGACCATTAGGGTACTGAGCCGTCTA GATGACTTGAGTAGGTCTAGCTATCGAGCTAGGTCATCCACCTAGGGCAAAGCAAGGCCACTATTAGACATAGAGAGGTC TAACTCAACCCAAAAGCTAGCTCAAGAGTTGAGGGTTGCGCTATGATAGGGTCAAGAGGATGCAGAAGCCTCTTATCAGT CAAGTCTATGTTAGATGCAATAAGGGGAACTAGCTTAGTGCTTAATAATTGGCTTAGTGCTTAATAAACCTTGTGGTTAG AGAGACTATAAATAAGAACCCATGGTTCATAGTTAGTTAGCTTTTGCATATTGTTGGGTTGTTGGTTACAGAGCTTCAAC TGAATTGGGATTCAGTTGAGCTTCTCTGTTTCTGTTATCTTCTTCTTCCTCAGGATTCTTCTTCTACCAAGCTTTCATAT ACAGATATTGTTCCAGTTCTGCATTTCCCTCTGAGTTTCTTCTATCTTTGTTAGCTTTTGATTTGCTAGTGCTATCACTG GTATCAGAGCACCGATTCGGTGCCCTGAATTCCACGATTTCCTGAAGCTGCGTATGAAGACTCGTAGCATGGCGCGCAAC GTTGAGGACTGGCAGCAAGAGCGTGAGGAGATGCGAATTCGATTGGAGTTAGCAGAAGCGCTTGCGAAGAAGCATGAGGA ACAAATCGCTGAAATCGTGGCTAGGTTTGGCCACAATCGCGATCGCACCGGAGAACACTCTCAGGAAGGAATCGGTAGCA GTGGTGAGCGAGTGGATGATACGAATCGCAAGGAGAAATGGAGGAAACTGGAGATTCCGATTTTCGCCGGCGAAGACGCG TTTGGATGGACGCATCGATTGGAAAGGTACTTCTTGTTGAAAGAAGTTAACGAAGAGAAGATGCAAGCAACAGTTATGGC TCTTGAAGGAAAAGCTCTGAGCTGGTTCCAATGGTGGGAGAGGTGCAATCCGAACCTTAACTGGCAAGCCTTCAAGCTAG CTGTTGTACGCAGGTTTCAACCTTCCATGGTGCAAAATCCATTTGAACAACTTCTGGCTCTCAAGTAATCAGGAACTGTT GAAGAATTTGTGGAGCAATTCGAAAAGTTTGTGGGAGCATTGAAGACTATAGATCAAGAATTTGTTAGAGGAATCTTCTT GAATGGCCTCAAGGAAGAGTTGCAGGCAGAGGTAAAGCTTTATGAATTGAATTCTTTGTCAGAAATTATTCAAAAAGCTT TGTTGATAGAGCAAAAGAATTTGTTAGTCAATAGGAAAACTGGTTTTGGTTATGCAAGATCTTCTGGAAATTCCAGAGCC TATCCTTATACCAAAACTGTAACTGTAGAATCCAAATAAGGTTTGGATAAGAAAACTGACTCTGTTGTGAGTAATGGTGC TCAGAGTAGTACTGGACAAAATCTGAGTACAGACAGTGTCAGGAACAGGGGAGAATTTAGGCACTTAACTGGTGCTGAGG TCAGAGAAAAGAGGGAAAAAGGTCTCTGTTTCAGGTGTGATGAGCCCTATAATAGGGAGCATAGATGTAAAAATAAGCAA TTCAGAATGATAATATTGGATGAAGATGAGGAGGAGGATTTAGAGGTTTTTGAAGATTGCATGCATTCTCTGAAATCCTT ACATTTGTCATTGAGTTCCATGTCAGGGTTTACAACCACCAGATCTTGGAAGGTAGAAGGGTGGTTGAAGGAAAATTCTG TGGTAATCTTGATTGACTGTGGAGCCTCCCACAACTTTATTGCCACTGATTTGGTTGACAGATTTCAATTGCCAGTTTAG GACACTCCTTCATATTTTGTGGAGGTTGGGGATGGTCACAAGGTAAGGTGCAGGGGGAAATGTGCTCAGTTGCAGCTACA GATGCAGCAGTTGGAAGTGGTACAGGATTTATACCTCTTCACTTTAACTGGAGTAGATATAGTTTTGGGGTTGGATTGGT TAGCTGGCTTAGGGGAGGTCAAAGCTGACTTTGGGAAGCTAGAGCTGACAGTCAAACAGGGAGACCAGTTCATCAAGATA ATTGGAAATCCAGCTTTGGCCAAAACTGCAGTATCATTTGGAGCACTGATGCAAGTCCTCAAGGAAGAAGGAGAGGGGTT GCTGATTCAGTGTGAACCACACAAGGGAGAAGAAGAGATTCAGAGGGTAGTTTCCACTTCTATTAAGGACTTGTTAGTTT CTTTTGAGGATGTGTTTTCAGACCCTATGGAACTCCCTCCTACTAGAAGGCATGACCATGCTATTCATCTTCATGAAGGA GCTGTCATCCCTAATTTGAGGCCCTACAAGTACCCTCACTACCAAAAAACAGAAATTGAGAGATTGGTAGGGGAAATGTT GGATTCTGGGGTGATAAGACACAACATCAGCCCATATTCTAGCCCTATTATCCTTGTCAAGAAAAAAGATGGAGGTTGGC GGTTCTGTGTTGATTATAGAGCCTTGAATAAAATTACCATACCTAATAAATTTCTCATTCCTATCATAGAAGAGCTTCTT GATGAGATAGGGGGAGCTACTGTTTTTACTAAGCTGGATCTGAAATCTGGTTATCACCATATCAGAATGAGAGATTCTGA CATTGAAAAGACAGCCTTCAGAACTCATGAAGGCCACTACGAGTTTGTGGTGATGCCTTTTGGCCTCACCAATGCTTTCA AGCCCTCATGAATGAAGTTTTGCGGCCATATCTGAGGAAGTATGCTCTAGTTTATTTTGATGACATCCTGGTGTACAGCA AGGATGAGACATCTCATGTGACACACTTGAAGCAGGTTTTGGAGGCTTTGAGGTCTAATTCCTTGAAGGCTAACAAGAAG AAGTGCAGCTTTGCTCAACCTAGACTAGAATACTTAGGCCACATAATTTCTGGATCTGGGGTAGAAGCTGATAAGTCCAA AGTTGCAGCCATGAGTTCTTGGCCAGTTCCAAAGGACTTGAAAAGTCTAAGGGGTTTTCTGGGGTTGATTGGCTACTACA GAAGATTTGTGCAAGGATATGGTAAAATTGCCAAGCCATTGACTGAGTTACTAAAAAAGGATAGCTTTGTTTGGACTTCA GAATCTACAACAGCTTTTGAGACCTTGAAAGCTGCTATGATAAATTTACCTTTGCTGGCAGTCCCTGATTTTACTAAAAC ATTTGTCCTTGAAACTGATGCATCTAGTAAAGGGGTGGGGGCTGTACTAATGCAGGAGGGTAGGCCTTTGGCTTTTTGGA GCAAGGGTCTTTCACCAAGGGCTCAGCTGAAATCTGTTTATGAAAGGGAGCTTATGGCTTTGGTTCAAGCAGTTCAAAGG TGGAAGCATTACTTGATGGGGAGACATTTCATAATCAAAACTGATCAAAGAAGTTTAAAATTTCTCACTGACCAGAGGCT CTTCAGTGAGGAACAATTCAAGTGGGCAGTGAAGCTTATTGGGCTGGATTTTGAGATACAATTTAAACCTGGCAAAGAGA ATCCAGTGGCAGATGCTTTCTCTCGCAAAGGCATGTATTCAGCAATCTCTGTGATCCAAATGGATGATGGAGAAGATTGG TTCCAAGAGGTGCAGCAAGAACCTAAATGGAAGAAGGTCATTCAGGACTTGGCTGGAGATCCAAATTCTCATCCGGGTTT TCAATATCAGGCTGGCAGATTGCTTTATAAGGGCAGGCTAGTCTTATCTAAGTCTTCTAATAGACTTCCCTTGATCTTAG CTGAATGCCATGATAGTGTTTCAGGGGGACATTCTGGCTTCTTCAGGACCTTTAAGCGAGTTTCTAGTTTTTTCTATTGG GAGGGAATGATGACATATGTAAAACAGTATGTGGAAGCTTGTGATGTGTGTCAGAGATACAAATACTCTACCTTGGCTCC TGGAGGTTTGTTGCAGCCTTTTCCTATTCCTACTCAAGTATGGCAGGATATATCAATGGATTTTATTTCTGGCCTACCTA AATCCAGGGGCAAGGATACTATCTTTGTGGTTGTGGATAGATTGACAATGTATGCTCATTTCTTTGCTTTGGGGCATCCT TTTTCTGCCAAGGATGTGACAGCTTTATTTGTTAAGGAGGTGGTTAAGCTTCATGGGTTTCCAGCTTCTATAGTTTCTGA CAGGGACCCTTTATTCCTTAGCCAATTTTGGCAAGAGATGTTCAGGTTGGCAGGTACTCAGTTAAAATACAGTACAGCTT ACCATCCTCAGTCAGATGGCCAAACTGAGGTGGTCAATAGAAGTCTGGAAACATATCTCAGGTGTTTTGTTGGTCCCAAA CCCAAGATGTGGGTGGATTGGCTGTCTTGGGCAGAGTTTTGGTTTAACTCTACATACAATGTTTCTGCTGGCATGACCCC TTTCAAAGCTCTCTATGGGAGGGACCCTCCAACACTCATCAAAGGTTCTACTTTCACTTCTAAGGTGGAGGCAGTTAACC AATTTCTTACTGCAAGGGATTTGATTTTACAGGAGCTTCAGCATAATTTACTGAAGGCTCAGGAGTTAATGAAGGTCCAA GCCAATAAGCATCGCAGACCAGTGGAGTTTGCAGTTGGTGATTGGGTATTTCTCAAGCTTCAGCCTTATAAGTTGAGGTC TTTGGCTCACAGGCCTGTGGCCAAACTGTCCCCTAAGTTCTATGGTCCTTACAAGGTTCGTGAGCGCATTGGATCAGTAG CCTATAAGTTGGAGCTTCCAGCTCATGCTAAGATCCATCCGGTGTTCCATGTTTCTTTACTGAAGAAAGCTTCCCATTCT GTTCCACATCCTCAACCATTACCTCCTATGCTTTCTGAGGAACTGGAACTTCAGGTGCAGCCTGCTGAGATTTTGCAGTG GAGGGAAGATTCTGAGGGCAACCTGGAGGTCTTAGTTCACTGGGACAACTTACCTTCTTGTGAGGACTCTTGGGAAGTTG CTGATCAGCTGCAGAAGGCTTTCCCTCAATTTCCCCTTGAGGACAAGGTGGCTCTTTTGGGGGGGAGTATTGATAGGGTC AAGAGGATGCAGAAGCCTCTTATCAGTCAAGTCTATGTTAGACGCAATAAGGGGAACTAGCTTAGTGCTTAATAATTAGC TTAGTGCTTAATAAACCTTGTGGTTAGAGAGACTATAAATAAGAATCCATGGTTCATAGTTAGTTAGCTTTTTCATATTG TTGGGTTGTTGTAACTGAATCAGGGATTCAGTTAGGTAGTTACAGAGCTTCAACTGAATTGGGATTCAGTTGAGCTTCTC TGTTTCTGTTATCTTCTTCTTCCTCAGGATTCTTCTTCTACCAAGCTTTCATATACAGATATTGTTCCAGTTCTGCATTT TCCTCTGAGTTTCTTCTATCTTTGTTAGCTTTTGATTTGCCAGTGCTATCACGCTACCCTTTATAAACACTTGTTTGACC ATATATCTAGCCAATGTGGGACTTTTAACACACCCTCTCACGTCCAGGGATGAACATCTAGAGCGTATAATGGAGGCCTA CTCAACTTAAAAGCTAGCTCAAGAGTTGAGAGTTGTTATACCCTTTATAAACACTTGTTTGGTTATATCTCTAGGCAATG TAAGACTTCTAACAGCCACGTCGCTAAGGCTTCTTGACGCCTAGGCTTGGAGGGTTGTGGGCTAATGGGGTACGTCCATA TGACTTGTGTAAGTCTGGGTATATATCAAGGTAAGCCATCCGCCTAGGTCAAAGCAAGGCCACATGCCAAGGCTTCTTGG CTCCTACCCTTGGAGGGTTGCAGACCCCTAGAGAGTTGGGCTGACCAGGTTATAAATGCTGCACCGGGATCTTAGCATGC TGACCAGTTTCTTGCTTGCTTGAGTCATTTCACACTCTATCCGCACTTATACCAAGATAGATAGTCTCCCTTTAGGCACT GATAAAATAACACCATGAAAGACTTCATTCACCAGCTTCACCAATGAGCAGAAGAATACTACCTTAAAATATTCATCTTC TCCCACTCCATCTTTGAAACTACTACTGTTCTCTTCATATTCATTTTCCTATAAAGCCACTGAGCAGCCAAATGCGAAAA ACAGAACCACCAAACCACCTTGACCTTCCATCAAACACATCAAAAGTGGCGAACCACTCACCGAACACCCAAATGAGAAC TGATTTCGCCACCCTCTAAATTACAGCAAAACTTTAAATTTGTCACTAACACTAGTTAGGAACTCTGGTTGCAATTTTTT TATTAAAAACTTGCTAGTATACATAAGTTACAAGAAATTGAAATCCTATGTCCTCATTTAAAGTCACATTATCTGTCATT ACTATTAAATTATGTCATGTCATTTAAAAATCTAGCAGCCTAATGCACATTGTACATACCTTGCTTCCATTGGCGATAAA CACTGAACATATCTGTATCAATAATCTTATCCGTTGGTCGACCCCCGCTACCCGTGAATGCTGCAAAAGCTCTTTTCATG AGTGCCTTCAAAAGCTGACTACTCCATTGGTGCTTCTTCTTTTCTATCTTCACATCCTTTAACTCTTCAAAAGTAGATCC ATGATGCAAATGAATTATAATGAAAATCGGTTGTGTTAATTAACAATATATCATGTGTAACATATCAACATTAAATTGAA GCAGCACTTAGATCAATTAAGAAACACATACCAACTCCTGAAAGACCAAGAATGTGCACATATGCAGACTTGACAAATTG ATGAAATGTTTCATAATTTCGTGGCAAAAATCCAACCGGATATTCTTTTGATATAAACGGATAGTGAGCTTCGTTTCTAT TGTTATTGGTCTGTTTATTGTTTGATGGGTTTTCTGTGTCATGATGATTATTCCCCTGGACAATTTTGCCTGACCAATGG GATACAAAAGGGAAAAATGTTAAACACAAGTAATTGATGACATATGATAAAGTAATAAAATTTGAAAAAGTTAAGGAAGA TGTATGGATAGCATGAGAATCTAGGCTACACGTACCTTGTGGAATGGCAAACTTTAAGAATGCAGAAAATAGGTCAAATA ATGTGGTGTAGTTCTTTGGGAAATTCATTTTATCAGAACCTGACAGCTCCATCTTCCTCAAACTCCTCTTCATTGCTTTT TCTGCATCCAGTGGTTCCACAAGTATACCTTTACCAAAATATATTATAGTTAATGCATGGATTTGCCAAAAGCACGTTCG AACTGTCTTGGAATATGCACGAACAGAAATACCAACACACATGAAATATATTGTGTACGACTTAATTCATAGAATGTTGG TACTAACTATCAATGTGTAGTTTTTTAACATTGCAAAGCTTGGCATGCATGAGAGGCGCGCAACAATGGCTATTATTGGG GTAATATTGATGTCAATGATTGTCCAATGCATTTCTATTGAGAATGGTTGTTTCTCAAGCTCTCATTTTTATGAATAAAA TCTTTTTCTTTCAAAAAAATATTGGTATTCATGTGTGTTACTTACAATGGTACAGGATTCGCTTCCACCAGGAAAGGTTG CTTGCACTTTTGAAGGCTGAGGGCCTAGTGGCAAGGACTTTGAGAGGAGTTGATTCCTCGCTATTCAAATGTGTGCTCAG AAAATCATAATAGTGAACTATTATCACAGCCAAATCTGTTGCAGCATAGATAGAAATAGCAATACATATTCAGAATGCAA TAAATATGGATTAAAGTATTTATTTGGATTTCTGTTTGCGACATTTAAAATCACTACAAATGATAAATTAGAACAAATTT TTTTTTAGCTAAATGTAGCAAACATTCAAACACACTAAGTTCTCTATAACTATAACAGAATTGAAAGAGTGTGAATGAAG TTTGTGATCTGAT 

CDS sequence (LotjaGi1g1v0067100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAAGACTCGTAGCATGGCGCGCAACGTTGAGGACTGGCAGCAAGAGCGTGAGGAGATGCGAATTCGATTGGAGTTAGC AGAAGCGCTTGCGAAGAAGCATGAGGAACAAATCGCTGAAATCGTGGCTAGGTTTGGCCACAATCGCGATCGCACCGGAG AACACTCTCAGGAAGGAATCGGTAGCAGTGGTGAGCGAGTGGATGATACGAATCGCAAGGAGAAATGGAGGAAACTGGAG ATTCCGATTTTCGCCGGCGAAGACGCGTTTGGATGGACGCATCGATTGGAAAGGTACTTCTTGTTGAAAGAAGTTAACGA AGAGAAGATGCAAGCAACAGTTATGGCTCTTGAAGGAAAAGCTCTGAGCTGGTTCCAATGGTGGGAGAGGTGCAATCCGA ACCTTAACTGGCAAGCCTTCAAGCTAGCTGTTGTACGCAGGTTTCAACCTTCCATGGTGCAAAATCCATTTGAACAACTT CTGGCTCTCAAGTAA 

Protein sequence (LotjaGi1g1v0067100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MKTRSMARNVEDWQQEREEMRIRLELAEALAKKHEEQIAEIVARFGHNRDRTGEHSQEGIGSSGERVDDTNRKEKWRKLE IPIFAGEDAFGWTHRLERYFLLKEVNEEKMQATVMALEGKALSWFQWWERCNPNLNWQAFKLAVVRRFQPSMVQNPFEQL LALK 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 4 164 161 1.2E-19
PANTHER 4 164 161 1.2E-19
Coils 10 44 35 -
MobiDBLite 48 72 25 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0067100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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