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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0069300 |
Transcript ID | LotjaGi1g1v0069300.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Heavy metal transport/detoxification protein; TAIR: AT4G05030.1 Copper transport protein family; Swiss-Prot: sp|Q5PNZ7|HIP46_ARATH Heavy metal-associated isoprenylated plant protein 46; TrEMBL-Plants: tr|A0A0L9UVC2|A0A0L9UVC2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0069300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:9575044..9576475) extracted from Lotus japonicus Gifu genome v1.2.
AGCAACAACAACAATAACAACAAAGCACGTACGAACGATACACTAGCTAGCAAGCTTCTCCACCACCAAGCATAAATTTC TGTGCGGTATCTAGAATTCAAAGATGAAGGTGAGATGATCACTTTTAATTTTTTTTAAAGGAGAATATTGCAAATAATTA AATTAGAAATTAGTACATGATCATCTATATATGCTTTCAATATAATAGGCTCTTCACTTGTTTGTTTCCATAGATAATAG TTGTCGAGGTGCACATGAAAGATGACAAATGCAGAAGCAAAGCAATGAAAATTGCTGCAGCATTTCAAGGTAAATAATGA AAATTCATTATTTTAAATTAAATTATCTATGAACTAACCTGTAACTTATTTCTAAGTAATTAAATTATTAGGTAAATATA TATTTTTTAACTGACGTTGACATACACTTTAGCCCGTCAATGGTAGTGGCGGTTAAAAATGTTAGTCGTTGCATGTCAAT TGTATGTCCGCTCGTTATAGACTTAATGCATCCCTAAACATCATTTTTGTACGTATTTGTAATACCATATTTGATATTAT GCTATCATGCTCTAGAATATTTTGGATTAGAAATTCTAAGTCTTAATTTCCTTGAGTAAATGTGTCTTGACTTAAATTAT GTGCAATCAAACCGAGCTAATTGTGTTGTGCTCATGATAATTTTGCACTTCTACATGTGTAGGTGTGCAATCAGTGTCAT TAGAAGGCGAAGGCAGAGATCAAGTGGTTGTGACCGGAGATAGAATCGATTCTGTTTGCTTGACAAGTAAATTGAGGAAA AAGTTCAGCTATGCAACCCTTTTAAGTGTTGGAGATGCCAAGGATTCCAACAATGAGGGTGGGGATGTCGAAGGGACAGA GGAAAAAGTAACAACTTCAACAGAAAACTTTTATGTACCTTATTCTTATGCGAACTATCCCCACCCCTCGTACCACGTCG TTTATGATCCATACCCATCTAGTTGTTCCATCATGTAGAAGGATTGAAATCTCCTCTTTTTATTTGATGTTCACACTTCT CTATTTTACCAATAAAACTATGTCATATATAGGGGTTGTCTAAACGACTCATGATAAAGTTTTAGTTAAATAACCCATCA TCCAATCACATTGGAGATAAATAAGTTGGAAATAAATTAATAAATAAAATATAGAAATTCCAACTCACTTATCTCCAATG TGATTGGATGGTAGGTTATTTAACCCAAACTTTATTATGGATCATTTAGAGAACCTCCATATATATATATTATTTAAAAA TCATACACACCACGTAAGATTATAATTGTTGTAATGTACCCGTGTGTTACAAAATTCTGTTTAAGTCTAACATTTTGTTC AATGAAAGACCTTGATATAATGTACCTTAGTTGCGTTGATAGTTAAAATTATATGCTCGAGATGAAAAATTC
CDS sequence (LotjaGi1g1v0069300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGATAATAGTTGTCGAGGTGCACATGAAAGATGACAAATGCAGAAGCAAAGCAATGAAAATTGCTGCAGCATTTCA AGGTGTGCAATCAGTGTCATTAGAAGGCGAAGGCAGAGATCAAGTGGTTGTGACCGGAGATAGAATCGATTCTGTTTGCT TGACAAGTAAATTGAGGAAAAAGTTCAGCTATGCAACCCTTTTAAGTGTTGGAGATGCCAAGGATTCCAACAATGAGGGT GGGGATGTCGAAGGGACAGAGGAAAAAGTAACAACTTCAACAGAAAACTTTTATGTACCTTATTCTTATGCGAACTATCC CCACCCCTCGTACCACGTCGTTTATGATCCATACCCATCTAGTTGTTCCATCATGTAG
Protein sequence (LotjaGi1g1v0069300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKIIVVEVHMKDDKCRSKAMKIAAAFQGVQSVSLEGEGRDQVVVTGDRIDSVCLTSKLRKKFSYATLLSVGDAKDSNNEG GDVEGTEEKVTTSTENFYVPYSYANYPHPSYHVVYDPYPSSCSIM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Gene3D | 1 | 71 | 71 | 1.2E-26 | – | |
PANTHER | 3 | 125 | 123 | 4.3E-38 | ||
MobiDBLite | 72 | 91 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0069300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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