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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0072000 |
| Transcript ID | LotjaGi1g1v0072000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nop53 protein; TAIR: AT2G40430.1 Nop53 protein; Swiss-Prot: sp|O22892|GSR2_ARATH Uncharacterized protein At2g40430; TrEMBL-Plants: tr|I3SS48|I3SS48_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0072000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:10153932..10158370) extracted from Lotus japonicus Gifu genome v1.2.
TCAGTAGACAAACGTGTTCTATTTCGCTCTCGCCGCACGTTGTCGCTGCCTCTTCTGCAAACCCTGTTCTGTGAAATCCA ACACTGAACGTGAAAACCCTTGAACCTTCAAGCATAGTCTGTGAGAGAATAATGGGGAAGAAAGCAAAGGGTTCAAGGAA GGGTAAGAAGGCATGGAGAGCTAACATAAGCACTGAAGACATAGAAGATTTCTTTGAGAAATCAACTAAGGATGCTCTCT CTGGAGGCTCCCTTGAAGCTGTTGCCAGTGACACCCTCTTTTACGAAGACAAGTCCAAAGGTACCATTTGATCTTTCTTT CATCTGGGTATATGCATTTTTTTCGTAATTACTGGCTTCTATGTGAGAAGTGTGTTTTTCATCACTAATTTTGATGTGGG TAGGTAGTGATTGAAGTGTTGCCATGATAAAAAGTTTTTATTTTCAATTTATTTGGAAGATGGGCTAATTATAATTATCT ATGTGAGAAGTATGTGTTTTCATCGCAAATTTTGATGTGGGTAGGGTAGTGATTGAAGTGTAAAATATGCAAAGAAAATA ATGGGAGATGCTCAGATGCTGATTTTTATTGTATGGGGGCTGCCATGAGAAAAAGTTTTGATTTTAAGTTTATTTGAAAG ATGGGCTAATGGTAATTTATTTGTGTTTCTAGTATCTGCTAATTTTTTGGTGTGGAAAAAACACTATTTCCAAAATGCCA ATTTATTCTACCAGAATGAGTTGGGTTTTCTATTGGTTATTGGATTAGGATATATCTGTATTTGGCTTGAAAATATATAA TTTCATGTGCATAGATCTTGCTGTGAAGAGAAAGATTGAAAAACATAGAGAAAGAGTGCTCCGTGTTGATAGTGTGCTAC AGAAGAACCAATTTGTTAAGCCAGTGCCGTCTTCGTTTCTGAAGAAGGGCTCTAAGAACCGTAAACCGGTCTCTATAAGT TTAGAGGCCAATCAAGATGTTCATAAGGTTAGTAAGTTGTTCATTATGCTGTAAGGCTGAAATACTAGTAGGATTGGCTA AAGTTCTAGTATTATTGGATCATGTTTGAAACTTTGAATTATTTGCTCAGCTAGGATCACGTCTGGATAAAATTGGGTGG TTACTTCTTGTCCCCTTTTCAACTTAAACCTTATTTCAAATCTGTTTAATTGACATTTCTTATCTCTAATGATCCATATC AGGATGATTCGACGTTAGCCTCCGGCACGTTTGATATATGGGGTGACCAAGGTACCTTATACTTATATTTTTATTAATTT GAAGTATTGGTGTGCTTTTTTGTTATTAAATTTTATAGGATTTTTCACATAGGGTTTTTGATATTGTCTTGCAGGTGAGG ACATCAAGAAGGTTAAGAAGAAAAAGGTACAGTTTATGGCATTACAGATATTTGTATCATGAATTTCTTATTTCATTTTT TCTTCATGGAACTTTCAATGTTTGAGCTGATAATATGATGGATGCCTGCTTAGCAGGTGTCAAAGTCTTCTATTATTCCA GCAGTAGAGGTTGATCATCCGGGATGCTCGTTTAATCCTGCATTTGAAAGCCATCAGGTAGTTTCTTGAGAAATTATGTG TTCCCATGCCATTTGTGATCTTTGTTTTGTCTGTAATCTTGAGGAAGAATCTTAAGAGCTTGATTGTTAAATCAGGATAT GTTAGCTTCTGCGGTCGCGGAAGAAATGCAAAAAGTCTACAAAGATGAATTGGGCCCTGAACCAGTGCCATTAACTGTTC CTGGAGAACCTATTGCTGAAGAAGATGTGAGTAGCGTTAGCTTCATTTATATAGTTACTGCACTAAATAATTTTGGCACA GTTATAAAGCTTTAGATGTGAATTTATGTGGCTTTTGTGAGTTTGTCCCTGCTTTATCAGTAACATGCTTTTTTGTCAGA TGTATTTTCTTGATGTGGATAATGGTAGTGATGATGATGAAAGTAATCCTGACAATGAGGATGATGCAGCAGAGAAAGGG TAAGCTATCATAATTTAAATTAACCTGACATTATTTAATAATATTAGTTAACCCCCAAATTATATTTTTTTACCATCGAG GCAGTTAATATAATGTATTGTTTTCTGTTTATTTTCTGCTCATGATTTTATGTACAATAGTAATTCAGGCATCTGAATGA ATTGTTGATCACTATTATGGTCCTTTTTCTGCATTTAATTTATAGTCTCTTCTGCTATTGTTAACAATACTTCTTAGATA CATAAAAATATTTTTTTACTGAGATCACATTCTATTTTTTCATAAAGAATTATGTAAATTTTAAATTTCTTCTGAAATCT GCAAAATATCTTAATTTCTTAACATGCTATGGTAGTAACTTGTATTGGGTGGCATTTTATTATCAAAACCCCATAATTTT TTAAAGATCTGATGTACTTGTATTGTTTGAATTACTCTGAGACAGGCCTATTAAAACAAAGAGAGTGACTAGAGTTGTGA TGAATAAGAGAGCTAGGCGCAAAGAACAACTGAAAACAGAATTTGAATCAAAGAAGAGGAAGGATATATCAAAAGAAATT GATAGGTAATGTGACCATTCTCTCTCTCCCTCCCTCCCTCTTCAACCACAATATGAGATGATATATATAACATCTTTGGT TCTTTGGGCTACAGCTTACCTGAAATTTTTGAGGAAATTGCGAAAGAAGATGAGGAAAAAAAGAGAAGACGTTTGAGGAG ACATGTTGCTATGGAAGAGAAGTTAAAGGTGTGTCCGCCACGCTTAGGAAAGCACAAGTAAGCAATCTTTTGTATTTATC TGAATTTGCTTTCCGCATCATACTTATGGGCATGGAAGCAGTTGTTAAGTGTTCTTAACTGTATTAGTGATAATTACTAT TTCAATTTTACAACAAAAATTTACCCAGTGTTTGTTGAGCTTCTCTGTTACTTAAGCCTACCAATAGAATCCGGTAGTTA TGATTCACTGATTCCATTCTCAAAACAGGTTTGTGCCAGCTCCTGTTCAAGTTTTATTAAGTGAAGAGATAAGTGGTTCA ATCCGCAAGCTTAAGGTATGCTTGCAAATTTCTCCTCCTGAGATTGGTTATTTTGGTGTCTTTTTTTGTGAACATACAAG TAAATTTTCCTACTTTTGTTCCTATCTATATAGGGTTGTTCCACCCTCTTAAAGGATAGATATAAAAGCTTTCAGAAAAG AGGATTGATTGTGCCAACCAAGAGTAAAAGGTTAGTTCAACTTCAAACTGGTCTATCATCTTATATCAAACAGATTTAGC AATAGAAGGTTCATATTTTGATTTTGGACATATATTACTGCCTGCAATGAGCCTGTACTTTATTGTCTTCTTCTTGGCCC TGTTTTGCAGAGTTTATTTGAGCTTATCTTATAGCATTAACATTTATTCAAGTGTTTGGGAGAGCTTATGTATATAGCAT TAACACTGATAGCAAACCTATCTATGAGAAGTTTTAAGCTTATCTTCGCAAGCTACTCTGATTAACCTATAAATAAGCTT TTATACCTACCCATAACATATTATGAGTTCAATAAACTTCTCAGATTAGTTTATGAATAAGCCTTACTGTCTCATCTTTC ATCTGGATTTTGATTACAGTGGACAGTTCATATTTTCAATGATTTTACTTCCATAAAATGCTGTGTTTTTTTTTAGTCAT TATTATGAATTAAAGCTCTTCTGATCCTATGGGGGGTTTGCATTGTACAGGAGGTAGTTTTCTCTTCGTCGTTGACTCCA AAATTCAGGCCTGGATATGTAGCAAGAAGACTAGGGATGGATGAAAGACCAAGAAAGTTTCTTTTTCAGTGATTATTATG CTTTTTTCTTATTTAGCTCAATTTTCACACATTTTCGGTTGCTGTAAACTTCAATATCGTATGTATTTTTATTTAATACA TTTTACCTTTTTATTGGAAAGCAAATAACTATAGATATAGCAACTCACTTGTTAGAATGCATAAGGGTTTATTCAGCACT ATTTTAATTGTTAGCAACATACTCTTTTAAATACATTATTCAACATGTTGGTTTAGTGTTTAAGATGTCAACATTTTTTA AAAAGGAGGTAAATCTGTTGATTCTATAAAGTAGACCAAATCCTTGCCCGGACTATTTTGGTTTGCTTGTAAAATCGTAT GAACTTCATAGTTACGTCTAGTATAACTTGTTGACTTTATAACAAATTGCAGAATAGTGTCAAAACTCAAATTACAACTG CATGCAGAGTCTATAAAATTATTTTATATTTTCTTTGTAATTGTTTTTACAAGATTACACTTTTATAAATTATTTACAAA GTCCAAAAAACATAATAATAATAATTAATTCGCGTGTTCCACGAGTTGGGTGTATTATTAGGAAGGATAACTATGATGAG TACAATCAACTAGATTCATGATGATGTGGCATAGCAAGG
CDS sequence (LotjaGi1g1v0072000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGAAGAAAGCAAAGGGTTCAAGGAAGGGTAAGAAGGCATGGAGAGCTAACATAAGCACTGAAGACATAGAAGATTT CTTTGAGAAATCAACTAAGGATGCTCTCTCTGGAGGCTCCCTTGAAGCTGTTGCCAGTGACACCCTCTTTTACGAAGACA AGTCCAAAGATCTTGCTGTGAAGAGAAAGATTGAAAAACATAGAGAAAGAGTGCTCCGTGTTGATAGTGTGCTACAGAAG AACCAATTTGTTAAGCCAGTGCCGTCTTCGTTTCTGAAGAAGGGCTCTAAGAACCGTAAACCGGTCTCTATAAGTTTAGA GGCCAATCAAGATGTTCATAAGGATGATTCGACGTTAGCCTCCGGCACGTTTGATATATGGGGTGACCAAGGTGAGGACA TCAAGAAGGTTAAGAAGAAAAAGGTGTCAAAGTCTTCTATTATTCCAGCAGTAGAGGTTGATCATCCGGGATGCTCGTTT AATCCTGCATTTGAAAGCCATCAGGATATGTTAGCTTCTGCGGTCGCGGAAGAAATGCAAAAAGTCTACAAAGATGAATT GGGCCCTGAACCAGTGCCATTAACTGTTCCTGGAGAACCTATTGCTGAAGAAGATATGTATTTTCTTGATGTGGATAATG GTAGTGATGATGATGAAAGTAATCCTGACAATGAGGATGATGCAGCAGAGAAAGGGCCTATTAAAACAAAGAGAGTGACT AGAGTTGTGATGAATAAGAGAGCTAGGCGCAAAGAACAACTGAAAACAGAATTTGAATCAAAGAAGAGGAAGGATATATC AAAAGAAATTGATAGCTTACCTGAAATTTTTGAGGAAATTGCGAAAGAAGATGAGGAAAAAAAGAGAAGACGTTTGAGGA GACATGTTGCTATGGAAGAGAAGTTAAAGGTGTGTCCGCCACGCTTAGGAAAGCACAAGTTTGTGCCAGCTCCTGTTCAA GTTTTATTAAGTGAAGAGATAAGTGGTTCAATCCGCAAGCTTAAGGGTTGTTCCACCCTCTTAAAGGATAGATATAAAAG CTTTCAGAAAAGAGGATTGATTGTGCCAACCAAGAGTAAAAGGAGGTAG
Protein sequence (LotjaGi1g1v0072000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGKKAKGSRKGKKAWRANISTEDIEDFFEKSTKDALSGGSLEAVASDTLFYEDKSKDLAVKRKIEKHRERVLRVDSVLQK NQFVKPVPSSFLKKGSKNRKPVSISLEANQDVHKDDSTLASGTFDIWGDQGEDIKKVKKKKVSKSSIIPAVEVDHPGCSF NPAFESHQDMLASAVAEEMQKVYKDELGPEPVPLTVPGEPIAEEDMYFLDVDNGSDDDESNPDNEDDAAEKGPIKTKRVT RVVMNKRARRKEQLKTEFESKKRKDISKEIDSLPEIFEEIAKEDEEKKRRRLRRHVAMEEKLKVCPPRLGKHKFVPAPVQ VLLSEEISGSIRKLKGCSTLLKDRYKSFQKRGLIVPTKSKRR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 109 | 109 | 6.3E-12 | ||
| PANTHER | 2 | 360 | 359 | 2.4E-128 | – | |
| PANTHER | 2 | 360 | 359 | 2.4E-128 | ||
| Pfam | 8 | 348 | 341 | 1.9E-61 | ||
| PIRSF | 93 | 362 | 270 | 8.1E-34 | ||
| MobiDBLite | 210 | 237 | 28 | - | – | |
| MobiDBLite | 210 | 225 | 16 | - | – | |
| Coils | 282 | 302 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0072000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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