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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0074000 |
Transcript ID | LotjaGi1g1v0074000.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Abscisic acid receptor; TAIR: AT2G40330.1 PYR1-like 6; Swiss-Prot: sp|Q8S8E3|PYL6_ARATH Abscisic acid receptor PYL6; TrEMBL-Plants: tr|I1JID6|I1JID6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0074000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:10647894..10649958) extracted from Lotus japonicus Gifu genome v1.2.
GTTGCAGTTTGAGATAAAGAAAGAAATTAAAGAGATAATTGATGAAACCAATAGTTCACATGCAAGTTGATGATCCACTT GCAGTTCTTGCAGTTTATCATTCACTATCTCACCTCCTCTTATACCATAAAAGAACAACAAACAGCAAGAACTTCTCTTT CTCTTTTATGAAACGCTATAACTACTCCTCCAACTTGCATTACATAATTATTAACCCATTTGAATTTTCACAAACCAAAC TTAACACCCCATTTTCCATTCTCAATATATATATTCATCATCATTATATAGATGAATAAACCTCTTTAGCTTCACAAAAC TAACACCTTTGGAGATATAGAGAGAGAGAGATTGAAGATTTCAAAAATGCCTTCCCCTATTCAACTCCACCGATACAACC ACCACGCCACCGACACAGCCACCGCAACCGCCATGGCAAACGGCGTGAACTGCCCTAAACAACCCCAGACACGCCGCTTC TCTCTCTCCTCCGCTAGAGTAACCGCCCCGGAGACAGTCTCCCGGCACCACGCCCATGTGGTGGGGCCCAGCCAGTGCTG CTCCGTGGTGGTGCAGCACGTCGACGCCCCAGTCTCCACCGTGTGGTCAGTTGTACGGCGGTTCGACAACCCGCAGGCGT ACAAGCACTTCGTGAAGACCTGCCGCGTGGTCTCCGTCTCCGGCGACGGCGGTATTCACGTCGGCGCGCTGCGGGAGGTA CGTGTGGTGTCGGGGCTTCCGGCGGCGTCGAGCACGGAGAGGCTGGAGATCCTGGACGACGAGGGGCACGTGATGAGCTT CAGTGTCGTCGGCGGCGACAACCGCCTGAGGAATTATAAGTCGGTTACGACGGTGCACGGTGACGGAAACGGAGGGACGG TGGTGATAGAGTCGTATGTGGTTGATGTGCCGCACGGGAATACGAAGGAAGAGACTTGCATTTTCGTTGACACGATCGTT CGCTGCAATTTGCAGTCTCTGGCTCAGATCGCAGAAAACATGATGATGAATTGATGACCATTCAACAATGAAGAAAGAGA AAACAAGACCCTGTTCTTCTCTGTTCCTCTTAACTTACCTTCATTCATCTTTTTCTTTTTGGTTTTTTTGTTTCTAATGC GGGTTATGATGTTATGTACCATGGACATATAGATACATGACATGATGAGCCTGTGTTGGAAATTGGTCTTGGACGTTTAG GTGTTTTTTGTTGGAGATTAACTCCAATGGTTGAATTTGAACGAATGTGATATCATGTAACATGTAGTCATGTATCATCA TCGTGATATATATAATCTATGTAGTGATCTATCTATATATGTTCAATTTTCTTCTTTCATTTTTCCATTCTGTTCTATCT CACCAGTCAATCCTATCGTGGACTGGTGGTGCTTCTTAATTCTGCACTAAGGTTGTTGCTCTGTTGGGGTTTTTTGGATT GTTTATCAATCTTATCTGAGAGAGATGTTCTCAGAACCTTTCCATAATATCATTCAATATATTTTGCTATAAGAAAAAAA AATCTACATTGAGGTTGTGTTCTTTCATGATTCTATTTACTTGCAAAATGTACTTTCAGTATACATTCATGATGATCATA TGGATCAAAATAAATATGGGACATCAAGTTGTACCTCTTGGTGACCATTGTGTGAGTGTGTGTGAACAGAACAGGTTGTG TACTATATCAAAGCTTCTCATACCCTAGTCCCTAGGGGTAATTTGTCTAATCAGAAATTAATTTGTATATGATGTGTGTT TAAGCATAATAATTTCAAGATTGGCTTACTTTTATTATTTAGAATTAAGTTATTTAGAATATCCTTTATAATATGTTTTT ACTGACCAAGTAAGATAAAGTGGAACTGGCTCGTGAATAGAACTTAATTAATATACACAAACAAAAGAGAAAATTTCAAA CTATACATTGGTCTAGTCTACATATGTGTTTAGCACATTTTGACTTTGTTAATTTGAGGCTGTTGTGTTTCGAATACACA TGCACTCATTGCACTCTATTGCAAATTACAATTAGAAGAATCTCGATAATCAAACTCAATCAACC
CDS sequence (LotjaGi1g1v0074000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCTTCCCCTATTCAACTCCACCGATACAACCACCACGCCACCGACACAGCCACCGCAACCGCCATGGCAAACGGCGT GAACTGCCCTAAACAACCCCAGACACGCCGCTTCTCTCTCTCCTCCGCTAGAGTAACCGCCCCGGAGACAGTCTCCCGGC ACCACGCCCATGTGGTGGGGCCCAGCCAGTGCTGCTCCGTGGTGGTGCAGCACGTCGACGCCCCAGTCTCCACCGTGTGG TCAGTTGTACGGCGGTTCGACAACCCGCAGGCGTACAAGCACTTCGTGAAGACCTGCCGCGTGGTCTCCGTCTCCGGCGA CGGCGGTATTCACGTCGGCGCGCTGCGGGAGGTACGTGTGGTGTCGGGGCTTCCGGCGGCGTCGAGCACGGAGAGGCTGG AGATCCTGGACGACGAGGGGCACGTGATGAGCTTCAGTGTCGTCGGCGGCGACAACCGCCTGAGGAATTATAAGTCGGTT ACGACGGTGCACGGTGACGGAAACGGAGGGACGGTGGTGATAGAGTCGTATGTGGTTGATGTGCCGCACGGGAATACGAA GGAAGAGACTTGCATTTTCGTTGACACGATCGTTCGCTGCAATTTGCAGTCTCTGGCTCAGATCGCAGAAAACATGATGA TGAATTGA
Protein sequence (LotjaGi1g1v0074000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPSPIQLHRYNHHATDTATATAMANGVNCPKQPQTRRFSLSSARVTAPETVSRHHAHVVGPSQCCSVVVQHVDAPVSTVW SVVRRFDNPQAYKHFVKTCRVVSVSGDGGIHVGALREVRVVSGLPAASSTERLEILDDEGHVMSFSVVGGDNRLRNYKSV TTVHGDGNGGTVVIESYVVDVPHGNTKEETCIFVDTIVRCNLQSLAQIAENMMMN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 32 | 213 | 182 | 5.2E-97 | – | |
PANTHER | 32 | 213 | 182 | 5.2E-97 | – | |
Gene3D | 41 | 213 | 173 | 1.4E-78 | ||
SUPERFAMILY | 64 | 208 | 145 | 3.21E-34 | – | |
CDD | 64 | 210 | 147 | 2.69807E-36 | – | |
Pfam | 65 | 210 | 146 | 2.3E-20 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0074000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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