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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0080400 |
| Transcript ID | LotjaGi1g1v0080400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Microfibrillar-associated protein 1; TAIR: AT5G17900.1 microfibrillar-associated protein-like protein; Swiss-Prot: sp|Q9W062|MFAP1_DROME Microfibrillar-associated protein 1; TrEMBL-Plants: tr|G7LH32|G7LH32_MEDTR Microfibrillar-associated-like protein; Found in the gene: LotjaGi1g1v0080400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:11605918..11610477) extracted from Lotus japonicus Gifu genome v1.2.
ATAAAGTATAAACTAAAGGGCTTTGGCACCGCTCCAAATTGCGAATTTCTCACATCGATCCAAATTGGTTCTTTCTCCCT AATCGAAATTTCCCGATTTCCTTCCTTTGCACCGTCGCACACTTCCTCCAAACCCTCTTCTCCCGCCATGAGCGCCGCCG TCCAAGCCTTCATCTCCGCCATCCCTGTCCATCTCCTCACTTAACGCCGCCGCCCGTGGTAGCGCATCGCATCATACTAT CCATCTCTTCCAACTAGGGTTTGTAACAGCAAGGGAACCAAACCAGGTCTTTTCACCTTCGGTGTTGAAATCGCAGAAGA AGAACCATGTCAGTGACAGCAGGTGTTAGCGATACAGTAATCGCTGTAAGAGATAAGCTCAGAGGTAAAATCGGCCAAAC CAAAGTGAAGCGGTATTGGCCGGGAAAAGTTCCTGAATGGGCTGATGAGGAGAATGAAGACGACGCCGCCGCTGCCGGCG GTGATTTCAGACCTAACCGGGAAGCTGCATTGGAGGAAGCGTTTCCTCGTCACGAAGAAGATGCGGCGATTGTGAGAAAA GATGACCGCAGGCTCCGTCGATTGGCGGAGAGCCGGATTGATAACCGGGAGGAAGTTAGGGCTGATCATCGTAGAATCCG GCAAGCGGAGATTGTTTCGACTATCGAAGAGGAGGCAAGGAGGCAGGAGAGGTTGGATTTTGAGGAGGATGATGAGGAGG CTTTGGCGGAGAGGAGGAGGCAGTTGAAGGAGAAGCTGCGTCAGAGGGAGCTGGAAGAAGAAGAAGCGCTTCCCACGGAA GAAGAGGAGGAGGAGGAAGAGGAAGAGGAGGAGGAGGAGTCTGAGTATGAGACTGATTCGGATGAGGAGTATACTGGAGT GGCTATGGTGAAGCCTGTGTTTGTTCCGAAATCTGAGAGAGATACCATTGCTGAGCGCGAGCGAGTCGAGGCTGAGGAGC TGGCTCTCGAGGAGGCGAGGAAAAGGAGATTGGAGGAGAGGAGGATCGAGACGAAGCAGCTTGTTGTTGAGGAGATTCGG AAGGATCATGAGATTCAGAGGAATATGGAATTGGGGGCGAACATTGCTGATGTGGATACTGATGATGAATTGAATGAGGC GGAGGAGTATGAAGCGTGGAAAGTGAGGGAGATTGGTAGGATCAAGAGGGATAGGGAGGAGAGGGAGGCAATGCTGAGGG AGAAAGAAGAGATTGAGAAGGTAAGGAATATGACTGAGGAAGAGAGGAGAGAATGGGAAAGGAAGAATCCTAAGCCAGCT AAATCATCAAAGCAGAAATGGAGATTTATGCAGAAATACTATCACAAGGGTGTTTTCTTCCAAGATGATCCCGACGACCG AGCTGCCACCGTTGGAACTGACAATATTTTCGCGCGTGATTTCTCAGCTCCAACTGGTGAAGATAAAATGGACAAGACAA TATTGCCTAAGGTTATGCAAGTCAAGCACTTTGGACGCAGCGGAAGAACTAAGTGGACTCATCTTGTCAATGAGGACACT ACTGATTGGAACAACCCGTAAGTTCACTCTCTCTTTCTCTTATATTTTAGTTAAAAAATAATGGTAGATTATGTATTCTA TTCATTGATATTTCTTTTTGTTCGTTTATCCCTCCAAAACATATATTGTTTATCTGCTATGGCACTGATGCAAAATGGTA ATGGACCCTTACTTTCACATTCTTGGCATGATATTGAGAAGCTTAGGTCTAATCTGAAATGTTGATTTATGATTTCTTTT TCTCTTAGGATCTACAAATTTTTAATGCCGATAAGGGATCAAATGATGTAGTACTTTTTATGAAGGATGACTTTTCTTAA AGGAATTTGGTTGTGTGAGATTGATCTTAAGTAGGGATTTGATTGGAAGAAATGTAGTTGAAGACATGTTTCATTTGAAA AAAGCTTAATTAAGCCTTCTATAGATTTTATTTTGCTGGAGTTCATTTTGTAAAAATGTGTACCTGTCTACCTGATTTGA AGTCTACAAATACTTCACCCTGACATCTGTATTTTCTGTTTTTGTTTTCCTCCTAATGATTATTACTTCTTTAGTGAATT TAGCTAGACTGTAATAAGTGATCTTTACTGATACTTCTTTAGTGAATTAAGCTAGACCGTAAGGAGTGATCTTGTTCTTG CATGTCATGATTTAATTGAATTGTTTATCAGCAGCCATTGTTTTTATCTAAAGTGTCTAGCTCCATATGTGACCAGCTTC TTGGTCTATACTGCACCTACTTCTTCAATCTGATTGTATTCTTCTTTGGTCTCCATCCCCAATATTGTGTGCTATACTTT ACCTTTTAATGATTGTGTTGCATGCTTTACCTTTTGTGGTCACCCATTATTCATGTCCCAGTCTGATCTATGATTTGTGT GTACAAAATATTCTATCGAAATTCTTGTAATTGAGATCATGATAATTCTATGCTAAATTATTAACAGTAATTTAGTTGGC ATTTAAAGAAGTCAAGTAGCTATTATGTGTCTTTATAATGCATTTTCTTTTAAAGATGTGTTTTTTATGTTTCTGTTTGT TTTGTCATTTGCTTGTGAAGTTAAGAGAGTGTAACATAACAGTTAAAACTTATTATTCTACATTATTATCTTGATTAAGG TCTATTCTCAGTGTCTCTAAAATGCTAGCTTTATTATCAATGCTGAATCTGTTTGTTTTGGATATTGTTGTAACTTGTGT AACCACACTTATGATTTTATAACAACGAAAAGTCAAATAGGGTCTATTCTTTTTTGTTCTTTCACCAGGATTTTATCATG CATTTTCATTCTAGGTTGATAGGCTTACGGTCATTTTATTATATGTTGATAAACATCTTCGAAATTTTGGGCTTTAGCAT GTTTAGGTAGAGTTTTCGCTGCTTTGTCACAGAAATTGCTGCATCACCATGTATGCATTTGTTTTAAATTCTACATTTTT CTTTAAGCTGGATTATTGAATATTCTTGGATCCATATAGCTTGGATTGGTTTTTGTTATTAAAGTAAATGCCTTTCTGAG GTCTTTATGCCCTGAAGTACTTTCTATGGGTCTGGTCTATCTCCCATACCATGAATTCTGGATTTGTTAATGCATTGATG GTAGGAATTCATTTTGCTTACCATACAAGGAGTAACATTTTATACTAACTTAATGTTGTTGATTTGTAATACAGGTGGAC TTACAATGATCCACTTCGTGCAAAATATAATCAGAAGATGGCAGCAATGGACGCACCTATAGCGAAACCTAAAGGAAGCA AAAAAATGAAGGATTGGGAATCTCGATGAATTTGAAGTTGCGAAAATATGTATTAAGGTATTGACTTTTCAATACGGTGG AGAAATACTAGATTAGATTCTTCCTATCCTGCATATGCTTATGTTGTGGAGTACTTTATGAGAATTAGCACGAGCTTGTT GCTTCTATAGTTGATAATTATGCCCAACGATGCAGTCTAGACCCCTTCTCAAATTTCATGGTTATGGAGTAATTACCAGT CAGAAGAAATAGCTAGTCTGTTGTTTCTATAACTTTGTATAAGGATTTCAGTTCTTGCCTTGGCTTTCTGAAACTTTGAC CATATGTTTAATGGATGCTCTCCTTTTCGCTTCCTCTGTGATTATTCCGAGCCCTTTCCCCTATTTTAGTCTCTGTTTTT AAGTGTAAAATAGGTTTTAAATCCTTGTTTTCTTGGCACATAACTCGGGTATGTCTTTCTCCTCCTATCTTTATTATTAG CTTCATGCGTGACTTGAAATCTTGACAAAGTGGTTCTGTTTTATTGGTTCTATGTTCAGCAATTTTTTTGAGTTTCTAAC ACCAATTTGCTGGCTTTGAAGTGTTGGAAGTGAGCTAGAAATATTTAATTTTGGTTTTTGGAAAAAATTCTCACCATTGG TGCCAAGAAGGAAGAGATCTTGAATTAACTATACTGGTTTTGATTCCAGATTCTGCATTCTGTTATATGATTCTTGCTAT GACTTTTTGGCTTTTAAAAATGGTTTATTGGTGCTTGATATGTGAAATTCTGAGACAAGTGAATTTTAGGGGGTTGGTCT TGTAGCCTGAAAATTGGTTCACAAATGCAAGGAGCACACATGATGCCAATTCCAGAACCTTTGTCCTTAATGGTAGTGCT AGCTGAGTAGGGTTATCAGTGATTGGAACTGTTAGCCTCACTTGCTTAATGGGACGGTCATTAACGTTGTATCTATCTTT GCCTGCGTTCTCTATGACCCTATTTTGAGACACTCCTCTGCTTGATGTAGCTCCCTAATCCAAAAAGCAAAGAAAGGAGA GGACTGAAAGGAACAACCGGCATTATGAAGCGATCCCATAAACTAGTCTTTGAAAGTAGTGATCTCTATAGTCATTCTAA TCGACTGTTGTAACCCATTTCAACACTTGCAATTAGATAAAACTGGCTTAAATTTGTATACCCAGATGCAAATTTCAGCT TTGGTTTTAGTAGGACGTCATGATCGTTTGATGAAAGGAAGAGAGAAAGCTGTGAACTTTAGTAAGATGGATAATTTAAG
CDS sequence (LotjaGi1g1v0080400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAGTGACAGCAGGTGTTAGCGATACAGTAATCGCTGTAAGAGATAAGCTCAGAGGTAAAATCGGCCAAACCAAAGT GAAGCGGTATTGGCCGGGAAAAGTTCCTGAATGGGCTGATGAGGAGAATGAAGACGACGCCGCCGCTGCCGGCGGTGATT TCAGACCTAACCGGGAAGCTGCATTGGAGGAAGCGTTTCCTCGTCACGAAGAAGATGCGGCGATTGTGAGAAAAGATGAC CGCAGGCTCCGTCGATTGGCGGAGAGCCGGATTGATAACCGGGAGGAAGTTAGGGCTGATCATCGTAGAATCCGGCAAGC GGAGATTGTTTCGACTATCGAAGAGGAGGCAAGGAGGCAGGAGAGGTTGGATTTTGAGGAGGATGATGAGGAGGCTTTGG CGGAGAGGAGGAGGCAGTTGAAGGAGAAGCTGCGTCAGAGGGAGCTGGAAGAAGAAGAAGCGCTTCCCACGGAAGAAGAG GAGGAGGAGGAAGAGGAAGAGGAGGAGGAGGAGTCTGAGTATGAGACTGATTCGGATGAGGAGTATACTGGAGTGGCTAT GGTGAAGCCTGTGTTTGTTCCGAAATCTGAGAGAGATACCATTGCTGAGCGCGAGCGAGTCGAGGCTGAGGAGCTGGCTC TCGAGGAGGCGAGGAAAAGGAGATTGGAGGAGAGGAGGATCGAGACGAAGCAGCTTGTTGTTGAGGAGATTCGGAAGGAT CATGAGATTCAGAGGAATATGGAATTGGGGGCGAACATTGCTGATGTGGATACTGATGATGAATTGAATGAGGCGGAGGA GTATGAAGCGTGGAAAGTGAGGGAGATTGGTAGGATCAAGAGGGATAGGGAGGAGAGGGAGGCAATGCTGAGGGAGAAAG AAGAGATTGAGAAGGTAAGGAATATGACTGAGGAAGAGAGGAGAGAATGGGAAAGGAAGAATCCTAAGCCAGCTAAATCA TCAAAGCAGAAATGGAGATTTATGCAGAAATACTATCACAAGGGTGTTTTCTTCCAAGATGATCCCGACGACCGAGCTGC CACCGTTGGAACTGACAATATTTTCGCGCGTGATTTCTCAGCTCCAACTGGTGAAGATAAAATGGACAAGACAATATTGC CTAAGGTTATGCAAGTCAAGCACTTTGGACGCAGCGGAAGAACTAAGTGGACTCATCTTGTCAATGAGGACACTACTGAT TGGAACAACCCGTGGACTTACAATGATCCACTTCGTGCAAAATATAATCAGAAGATGGCAGCAATGGACGCACCTATAGC GAAACCTAAAGGAAGCAAAAAAATGAAGGATTGGGAATCTCGATGA
Protein sequence (LotjaGi1g1v0080400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSVTAGVSDTVIAVRDKLRGKIGQTKVKRYWPGKVPEWADEENEDDAAAAGGDFRPNREAALEEAFPRHEEDAAIVRKDD RRLRRLAESRIDNREEVRADHRRIRQAEIVSTIEEEARRQERLDFEEDDEEALAERRRQLKEKLRQRELEEEEALPTEEE EEEEEEEEEEESEYETDSDEEYTGVAMVKPVFVPKSERDTIAERERVEAEELALEEARKRRLEERRIETKQLVVEEIRKD HEIQRNMELGANIADVDTDDELNEAEEYEAWKVREIGRIKRDREEREAMLREKEEIEKVRNMTEEERREWERKNPKPAKS SKQKWRFMQKYYHKGVFFQDDPDDRAATVGTDNIFARDFSAPTGEDKMDKTILPKVMQVKHFGRSGRTKWTHLVNEDTTD WNNPWTYNDPLRAKYNQKMAAMDAPIAKPKGSKKMKDWESR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 439 | 439 | 4.4E-153 | ||
| Coils | 123 | 180 | 58 | - | – | |
| MobiDBLite | 145 | 191 | 47 | - | – | |
| MobiDBLite | 153 | 180 | 28 | - | – | |
| Pfam | 177 | 398 | 222 | 5.5E-75 | ||
| Coils | 212 | 232 | 21 | - | – | |
| Coils | 279 | 313 | 35 | - | – | |
| MobiDBLite | 422 | 441 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0080400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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