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LotjaGi1g1v0081400.1

Overview

Field Value
Gene ID LotjaGi1g1v0081400
Transcript ID LotjaGi1g1v0081400.1
Lotus japonicus genome version Gifu v1.2
Description Lachrymatory-factor synthase; TAIR: AT2G25770.1 Polyketide cyclase/dehydrase and lipid transport superfamily protein; Swiss-Prot: sp|P59082|LFS_ALLCE Lachrymatory-factor synthase; TrEMBL-Plants: tr|I1M7Y2|I1M7Y2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0081400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:11781129..11781928) extracted from Lotus japonicus Gifu genome v1.2.

ATCATAGAAACAAACATGGTATGTAGATTTGTCATGATATGATTCATCAGTCCATTATAGCTCCTTACCTTCTAAATTTT TACATTCTGTTATGTGGTTATGTATTCAATTTCACCTTATTCCACAAAAAAAAGTTATTTTTACTTTTTGTCTCAAAGTG AGTGCTCACAGTCACACAACGGATATTCAGAACATAGCAAACAATCTGATCCTTTGTAACATCAGTATAAGCCTACCTGA ACTATGCATTTAGTTATACTAAGATATTGTTTTTGACCTTATGATTTCATATCCTGCAGGCTATTGAAGTGGGAAATGGT AAATGGCAAGGTTCAGTTGGTGGCATAGTTTGTGCACCTATTAACAAAGTTTGGACCTTGGTCTCTCAAACTAAAAGACT AGCTGAATGGATGCCAATGGTAGAAAGATGCACTGCCTTGGCCGGAAACGAAGACGAAGCGGGCTATGTTCGGCTAGTCT CTGGCTTCATGTTTCCTCAACAAGATGGAGAAAGGTCATGGATCAAGGAGCGGTTGGTTTCACTGGACTCTTCATCACAT AGCTATGTTTACAGAATGGAAGCAAGCAATGTAGGCTTAGATGGATCTGTAAATTCACTAAAGCTAGTTGATTATGGGGA TGAATCAACTCTTGTTCACTGGTCCTTTGAGATAAATCCTTTAGAAGATGTATCTAAGGACAGCATAGTGGATTTTCTGG GGTTTCTCTATAAATCTTGCATTAATAAGATTGAGGATGCTATAGAAGCTGCATCAAGAAACGTTTCAACAGCTCAGTAA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0081400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTATTGAAGTGGGAAATGGTAAATGGCAAGGTTCAGTTGGTGGCATAGTTTGTGCACCTATTAACAAAGTTTGGAC CTTGGTCTCTCAAACTAAAAGACTAGCTGAATGGATGCCAATGGTAGAAAGATGCACTGCCTTGGCCGGAAACGAAGACG AAGCGGGCTATGTTCGGCTAGTCTCTGGCTTCATGTTTCCTCAACAAGATGGAGAAAGGTCATGGATCAAGGAGCGGTTG GTTTCACTGGACTCTTCATCACATAGCTATGTTTACAGAATGGAAGCAAGCAATGTAGGCTTAGATGGATCTGTAAATTC ACTAAAGCTAGTTGATTATGGGGATGAATCAACTCTTGTTCACTGGTCCTTTGAGATAAATCCTTTAGAAGATGTATCTA AGGACAGCATAGTGGATTTTCTGGGGTTTCTCTATAAATCTTGCATTAATAAGATTGAGGATGCTATAGAAGCTGCATCA AGAAACGTTTCAACAGCTCAGTAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0081400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAIEVGNGKWQGSVGGIVCAPINKVWTLVSQTKRLAEWMPMVERCTALAGNEDEAGYVRLVSGFMFPQQDGERSWIKERL VSLDSSSHSYVYRMEASNVGLDGSVNSLKLVDYGDESTLVHWSFEINPLEDVSKDSIVDFLGFLYKSCINKIEDAIEAAS RNVSTAQ
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR33789:SF5
2 162 161 1.9E-84 –
PANTHER
PTHR33789
2 162 161 1.9E-84 –
Gene3D
G3DSA:3.30.530.20
3 166 164 2.1E-33
IPR023393
SUPERFAMILY
SSF55961
19 159 141 1.6E-22 –
CDD
cd07821
20 157 138 5.08176E-28 –
Pfam
PF10604
20 131 112 1.8E-14
IPR019587
Coils
Coil
149 167 19 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0081400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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