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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0084100 |
| Transcript ID | LotjaGi1g1v0084100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Plant/T7H20-70 protein; TAIR: AT2G39855.2 plant/protein; Swiss-Prot: sp|Q6G4D1|DXS_BARHE 1-deoxy-D-xylulose-5-phosphate synthase; TrEMBL-Plants: tr|K7M585|K7M585_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0084100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:12064278..12070361) extracted from Lotus japonicus Gifu genome v1.2.
CTTTCCTATACATCTGCTAGCTCATCATCTCTGTATCTTTTCCTTCCCCTTATTCTATCTGCTTTGTTTGGCTTCGAATT TTATCCGACCCTTCCTTTTTTGTCTCTGACTCTCTCTCTAGTCTTAATAAGGGAATACTCATCCACATAGTACTAGTTTT CTTTGTTGGTTGACAATATCATCTAAGCTTATTTGGTATAACAACTCTATAAACATACATATATATGGATACCAAGAAAA AACAAGCAGGGGATTCTTCTTCATCAACCATGAATTTTGATCATCTTTTTGGTCCCAAGGACTCCTCGACTACTTCATCT TCCTCCGCCAGCCTCTTTGGCTCCATGTTTTCGCCACCACCACCTGTATGTATATATCACCTTCTCAAATTTCTATTGTT ACTCTTAAATCGTAATATGCATGTTTGAGTCAACTTCTCTTTCATCATAGTCACAACTAACTATGAAATTTAAAAAGCTG CTTAATTTTGTTTATCTTTCAGCACAGTCATTGTTAATTTTGTTGAATGTGTGTTACACTTCGAGTTGTATTTAAAAGTG CCGGCCCAAAATATTGGGATAGGTGGGGAGGGTGCTCGGGCCAAAAATACGTTAAGACACTCATAACCTGTATATGGTTT TGAAACCAAATAACATGTAAATGGTCAATTGTATACTGCCTGTGTTGGTTATTTAAAAAATATAGTATGGTAGAAGAGAA GAACGATAGCAGAGAATTGGGAGCATAAAGCATATTTATTCAGCAGCATAGCAACTGGTTTTATACAGCAGAATCACCAA CATAAAATTCAAATTCAAAAACATAACAACTACTAGATGAAAGCCTAAAAAATAGAAGCTGAAACAGCTCTATCTTATCA GTCAATAAGACTGTTATTTTCCTAAATAATAGCATAAAAAATTAATCTTCTGCTGTTTGTTTATTTCAAAGTCAATCAAT CAACACTCCTCCTTGACTTTGGAACTGCAAACTCCAAGCTTTTGCCTCAAGAACTCAAATCTGGATTTCGGAAGTGCCTT GGTTAGGATATCAGCTACTTGATTTTCTGTCTTGCAGTAGATTAGCTTCACTTCTCCTTCCCTTTGAACCTCTCTTAGAA AATAAAGCTTTATCTTGAAGTGCTTTGTTTTTCCATGAAACACTGGATCATTGGATATTGCAATTGCAGCCTGATTGTCC ACCAAAATCTGAGTGCTACCATGTTGTTCCATATGCAAATCTGCCATGATTTTCCTAATCCAAATAGTTTGATTCACAGG AGCAGCAGCAGCTACATACTCGGCTTCCGCTGTAGACTGAGCTATAATTTCTTGCTTTTTAGAACACCATGAAAAAACTC CAGAACCAAGAGTAAAACAATAACCAGAGGTGCTTCTCATGTCATCAACACATCCTGCCCAATCACTATCAGAATAACCA TGAAAGTTGAAGCTTTTTACTTGCCTGTATCTTATTCCATAATCAGTGGTTCCTCTAACATATCTAAGAACTCTTTTTGC TGCTTGAAAATGAATTTCACTTGGACAATGCATGTACCTTGATAGCAAACTCACTGAATGCATGATATCTGGCCTGATAC TTGTTAAATACATCAAGCATCCTATTAAGCTTCTGTACAGCTTTTCATCAATCTTTTCAGCTCCATCTTCTTTGCAAAAC TTCTCCTTTTGATTCATTGGAGTAGCTGTTGGATGGCACTCTTCCATGTTGAACTTCTTGAGGACTTCCTTTGCATACTT TACCTGACACACAAATATTTCATGTTGCTTTTGCTGCACTTGCATACCAAGAAAGAATGTCATCTTTCCAAGATCGGTCA TTTCAAAGACATCTTCCATTTCTTTTTTAAACTTGTCAATCATCTTCTTGCTACTTCCTGTAACAAATAGATCATCAACA TATAGAGATAACACAAGTATATCTTCATCCACCTTTTTAACATATAAGGTAGACTCACTTAGACTTTTCACGAAGCCTAA GCTTTCTAAATGTGTATCAATTCTGCTGTACCAAGACCTTGGTGCTTGTTTTAAGCCATACAATGCCTTCTTTAATCGAT AAACCTTATCTTCTTGTCCTTGAAGAACAAATCCTTCTGGTTGTTCAACAAAAATTTCTTCCTCCAAGTATCCATTCAAA AAGGCTGATTTGACATCCAATTAGTGTACAATCCAATCATTTTGTGCAGCAAGTGCAAGCAGCAGCCTTATTGTATCCAA CCTTGCAACTGGGGCAAATGTTTCAGAGAAATCCACCCCAAACATTTGGGCATAACCCTTGACAACAAGTCTTGCCTTAT GCTTGTTCACAGAACCATCAGGATTAAGCTTGGTTCTATAAACCCACTTGACTCCAATGGCTTTCTTATGATTTGGTTTG TCCATCAACTCCCATGTGCTGGATTTATTTTATGAAGCTTAAATCTGAAGTTGCTGACATCTTTTGGAAGTTCAAAGCCT GGGTTGAAACTCAGAGCAAGTGCAAATTGCAGATGATCAGATCTGATAATGGATCTGAATATACCTCAGGAAAATTTAAC AAGTTTTGTGAAGATGCAGGCATAGAACACCAGCTGACAACACCTTACTCCCCCCAGCAGAATGGTGTTGTAGAAAGAAA GAATAGGACAATTATGGAGATGGCTAGATGCTTACTTCATGACAAAGGGCTACCAAAGAAATTCTGGGCAGAAGCTGCAA ATACTGCTGTATTTTTGCAAAACAGGCTGCCAACAAAAGCTTTACAAAGAAGAACACCGTTTGAAGCATTCCTACCTAGA TGCTTTAGATCTGTGGGAAGCCGTGGAAGAGGATTATGAAATACTTCCGCTGCCGAATAATCCTACCATGGCTCTGATAC CAATTTGTTGGTTATTTAAAAAATATAGTATGGTAGAAGAGAAGAACGATAGCAGAGAATTGGGAGCATAAAGCATATTT ATTCAGCAGCATAGCAACTGGTTTTATACAGCAGAATCACCAACATAAAATTCAAATTCAAAAACATAACAATTACTAGA TGAAAGCCTAAAAAATAGAAGCTGAAACAACTCTATCTTATCAGTCAATAAGACTGTTATTTTCCTAAATAATAGCATAA AAAATTAATCTTCTACTGTTTGTTTATTTCAAAGTCAATCAATCAACAGCCTGCCTATGTCGGACTTCTCTTTGCAACTC TTTCATCCCTTACTCATATTTTCTAGTTCTATTTTTGTATGTATATTGTATAAACATATTACATGTACTCAAGCTTTTAC TCTTTTTGAACTTGTAATAAAGGTTGGGAGAAGAGAATCAAGAACACAAGTAGTGGGCAGCAGAAACTTCAGTGCACCAG GTTCGATCAGAATCTCCTCTGCATAATGATATTAATTATTTGGATTACATGGAAGTATGGAACTAATGCATCTATACAAC TACCTCTTTAATTCAGAATATATCTAAAATCTTGTCTACAAACTGGGAGCATATGTATATGTGGCTTTAAATGATCACTT AGAATTAATGTCTGGATTTATAATTTTGGTAATTAATGGAACTCTTTTGGATTGGTTTCAGGAACTCACAGAAGCAATAC TAATAAAGGTGAAAGCAACAGTCGCATAATCTGTAACAAGAATTATCAGAATGAGATGGTGGAGGCTCAGCCTAGCTACT TCAGCTCTTCTATCTACTATGGTGGTCAAGAAAATTATTCCCCCAGAACCACCCAACCCCACCAGCATGTTGTGAGTGCC ATTAATCCTCATCCTTTTTTATATATGGTCCTTAATTGTTTAGCACAAGAAAAGTTCATAAACATAAACTAATGTTTCTT TTGGGTATACTATATGAAATATGATAATGATTTGTGCATTGATATTACGCCAATGACTGCACTGCAAAAATCGCCACCAA TTACTAAATGTCCGCCAAACAACATTGGTTTTATAATACATGTATCACAGTGATATATGCTTGACAAAGAAAGGAATGGT CCTAGAAGATCTATTGAAATCATTGTTCAAAACATGATTTCAATATAGGCTAGTATTCTAGTATTATGTTTTTGTTTGTA TTTTCTTATTTGGGGCTTGTATTGGCCATTATAGGATTAAAGGTTTTGTTTGTATTTCGATTTGGACTTGTTTTTATTTG GCTCCTCTATGTTTAAGTTTGGACTTTTATATTGGGCCTACATAGAGTTCGGATTGGGCTTAGGGATTTTTTGTCAGTCC AATAGGATTTGGACTTATATAGGATCCATTAGTGAGTCATAACTTGGTTTGGGCTAACATGGGCCTAACCCATGAGCACT TGCACAACCCTCTGGCCTATATTAGGAGTCTTCCTTTGTATTTTAAAGAACTTTGGTTCATTTTGAATGCAGAAGGCATT TTAGTGAGGAGTGTGTCTTTTCCAAGTTCTTTCCTTAGAAAAACTCCTTTCAAGATTATCAAGGATCCTTCCTTGTGCCT CTTCTTCACCATATGACTTACCATTCCCCTCCTCCTATGGCTGATTGTGGCATCACCATCATCATCTTCTAGCTTTCACA ATTTCGACCTTGTTCTACTTGTTCTTGAGGATGCAAGGTGCTAGCTCCAACACTAGCTTCAAAATTCATGGAGTTTGAGC ATGGATCCGCATCACACAATCTCGTGTCTTGTAGTGTGTGTATATATATATATATATTTGTGTGTGTGTGTAAAAGTGTT TTTTTTTGTTGACAAATGTGTAAAAGTGTTAAAGAATAACTTTATGTGTATCTTTTGCCACTCAATTTTCTTATATATTA CTTTTACCATCTAGCCTAAAAATGTTCTATATGTTTGGGAGCGTGTTGAGCTAGCTGTGAATGTGGTATGGCCCAATTGA CTGAAGGCCCAATTAGACTCAGAAGTTAGAACCCTCAATCAACACATTGACCAAAAAAAAAAATCAATTTACCAACAAAA AAACAGAACATCAAATCTTGTACACCTTTGGTGTCCCTTTTAAAATATCCAGTGTGTTTTTTTTTTCCATCGGAAAAATA AATTGCATCCGTCTGGAATCGATCCCTTGACTTCCCCCTACCCAACCCATATGTCCCCTACTCCTACCACTTGAGTTATC CTACGGGAACATATCCAGTGTGTTTGACAACAACAAAAAACCGATTGGGACTCTTAGTTTCAACATACAACTTTGACTTC ATAATCATGGGAAAATATATAATTTAAGAAACCACAAGTAGTAAATTGTAATACTCTGATAATTTTTCACCTCTAATTGC AGTTCAAGAAAGATACGGAAGATGGTGATCCCAATGGTAATGACTCAAGCAGCGCTTCAAGAGGGAACTGGTGGGAAGGT ACGTATAGTAGCTAAAGGAATTAAAAAAAAAAATCAACTAATTAAGTTATAAATATCAGTAAACATAATTTACTCACTGT TTAATTAGTGCATCAATAATACTATTTTCGATTTATGCAGGTTCCCTTTATTATTGACATCACCACACCATATATGTTAA AAAAAACTCAGCATCCCACGGACAGGTATCTATTCCTCCCCATCATCCCCTGTAATTAAAAGCACATATATATATATATA TATATATATATATATATATATAATTGATTCATTATTAATTAATGTAGCTCAGCTCATAAACATGGATTTGTTGACATTAC TTTTGCAGGACGAAAAGCTCATGCTGCTTCTTTGGAAATAAATAAGTTAAGGTAAAATATGTATCCTGCGAGTGTAGTAC ATGGAGTCAACCAGCCAGTCAAACCGCAACAGTTGCATGGAGCCAAAACTTTTTTGTGCTTTGTATAATTTATGAAAACT TTTATATTTGGATAACCAACCTTTAAGTTTAAGACTTCTGTTTTATATCAATGATGTGATCCTCTTCTATACATATGTAC TCTCTGTAATTTGGGGCAAGCATCCCTCCTGTAGTTTAGGTTATTGCTATGACTAGTGATAATAATACTTCTTGCTTTCT TTTGAGTGTGCTCATGCATGTGTGTGTATTCTTATGTAATTAATGCTTGTAAATGACTTTCCTTTATTAATTAATCATCT TTGC
CDS sequence (LotjaGi1g1v0084100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATACCAAGAAAAAACAAGCAGGGGATTCTTCTTCATCAACCATGAATTTTGATCATCTTTTTGGTCCCAAGGACTC CTCGACTACTTCATCTTCCTCCGCCAGCCTCTTTGGCTCCATGTTTTCGCCACCACCACCTGTTGGGAGAAGAGAATCAA GAACACAAGTAGTGGGCAGCAGAAACTTCAGTGCACCAGGAACTCACAGAAGCAATACTAATAAAGGTGAAAGCAACAGT CGCATAATCTGTAACAAGAATTATCAGAATGAGATGGTGGAGGCTCAGCCTAGCTACTTCAGCTCTTCTATCTACTATGG TGGTCAAGAAAATTATTCCCCCAGAACCACCCAACCCCACCAGCATGTTTTCAAGAAAGATACGGAAGATGGTGATCCCA ATGGTAATGACTCAAGCAGCGCTTCAAGAGGGAACTGGTGGGAAGGTTCCCTTTATTATTGA
Protein sequence (LotjaGi1g1v0084100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDTKKKQAGDSSSSTMNFDHLFGPKDSSTTSSSSASLFGSMFSPPPPVGRRESRTQVVGSRNFSAPGTHRSNTNKGESNS RIICNKNYQNEMVEAQPSYFSSSIYYGGQENYSPRTTQPHQHVFKKDTEDGDPNGNDSSSASRGNWWEGSLYY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 81 | 81 | - | – | |
| PANTHER | 3 | 153 | 151 | 1.6E-43 | – | |
| PANTHER | 3 | 153 | 151 | 1.6E-43 | – | |
| MobiDBLite | 8 | 40 | 33 | - | – | |
| MobiDBLite | 55 | 81 | 27 | - | – | |
| MobiDBLite | 107 | 153 | 47 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0084100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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