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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0084600 |
| Transcript ID | LotjaGi1g1v0084600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | plant/protein; TAIR: AT2G39855.2 plant/protein; Swiss-Prot: sp|Q6G4D1|DXS_BARHE 1-deoxy-D-xylulose-5-phosphate synthase; TrEMBL-Plants: tr|K7M585|K7M585_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0084600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:12140854..12148086) extracted from Lotus japonicus Gifu genome v1.2.
CATCTCATTCAATTATATAGGAATAGAAAAGAGAGTATTGAGAGTCTCAGAGATATGATAGATATAATGTGATAAAAAAA ATATATGAAAAGAAAATGTGTGAAATGAGATTGAGAGAGTGAGTGTGAATGCATATCTAAGTGTTTATTTTGGGCTTATA AATAGAACAGCTCCTTTTGCCTCTCCTATATATACATCTGCTAGCTCATCATCTCTTTATCTTTTCCTTCCCCTTATTCT ATCTGCTTTGTTTGGCTTCAAATTTTATCCGACCCTTCCTTTTTTGTCTCTGACTCTCTCTCTAGTCTTAAGGGAATACT CATCCACATAGTACTAGTTTTCTTTGTTGGTTGACAATATCATCTAAGCTTATTTGGTATAACAACTCTATAAACATACA TATATATGGATACCAAGAAAAAACAAGCAGGGGATTCTTCTTCATCAACCATGAATTTTGATCATCTTTTTGGTCCCAAG GACTCCTCCACTACTTCATCTTCCTCCGCCAGCCTCTTTGGCTCCATGTTTTCGCCACCACCACCTGTATGTATATATCA CCTTCTCAAATTTCTATTGTTACTCACAATATGCATGTTTGAATCAACTTCTTCATCATAGTCACAACTAACTATGAAAC TTAAAAAGCTGCTTAATTTTGTTTATCTTTCAGCACAGTCATTGTTTATTTTGTTGAATATGTGTTACACTTCGAGTTGT ATTTAAAAGTGCCGGCCCAAAATATTGGGATAGGTGGGGAGGGTGCTTGGACCAAAAATTACTTTAAGACACTCATAACT TGTACATGGTTTTGAAACCAAATAACATGTAAATGGTCAATTGTATACTGCCTATGTCGGACTTCTCTTTGCAACACTTT CATCTCTTACTCATATTTTCTAGTTCTACTTTTGTATGTATATTGTATAAACATATTACATATATATACTCAAGCTTTTA CTCTTTTTCAACTTGTAATAAAGGTTGGGAGAAGAGAATCAAGAACACAAGTAGTGGGAGGCAGAAACTTCAGTGCACCA GGTTCGATCAGAATCTCCTCTGCATAATGATATTAATTATTTGGATTACATGGAACTAATGCATCTATACAACTACCTCT TTAATTCAGAATATATCTAAAATCTTGTCTACAAACTGGGAGCATATGTATATGTGGCTTTAAATGATCACTTAGAATTA ATGTCTGGATTTATAATTTTGGTAATTAATGAAACTCTTTTGGATTGGTTTCAGGAACTCACAGCAGCAATACTAATAAA GGTGAAAGCAACAGTCGCATAATCTGCAAGAATTATCAGAATGAGATGGTGGAGGCTCAGCCTAGCTACTTCAGCTCTTC TATCTACTATGGTGGTCAAGAAAATTATTCCCCCAGGACCACCCAACCCCACCAGCATGTTGTGAGTGCCATTAATCCTC ATCCTTTTTTATATATGGTCCTTAATTGTTTAGCACAAGAAAAGTAGTGTCACTTCATATACATAAACTAATGTTTCTTT TGGGTATACTATATGATAATGATTTGTGCATTGATATTACGCCAATGACTGCACTGCAAAAACCGCCACCAATTACTAAA TGTCCGCCAAGCAGCACTGGTATTATAATACATGTATCACAGTGATGTATGCTTGACAAAGAAAGAATGGTCCTAGAATA TCTATTGAAATCATTGTTCAAAACATGATTTCAATATAGGCTAGTATTCTAATATTATGTTTTTGTTTGTATTTTCTTAT CAATAATGATATATACACACTTCATTTTTAAACACTCAATTTTCACATTTTTTTATTTCTATCTCTCTCTTCTTATCATT TATCACATCTCATATTTTCTCTCTCTTACTTTTTCTTTTCTTCATATCTCTCTCCTCATTCCACCTCTCTCCACCTCTGT ATGAAACATTATTCTTTTCTTATTTGGGGCTTGTATTGGCCATTATAGGATTTTTTTTTTGGTCAAAGCCATTATAGGAT TAAAGGTTGTGTTTGTATTTCAATTTGGACTTGTATTTGGGTCCTCTATGTTTAAGTTTGGACTTTTATATTAGGCCTAT ATAGAGTTAGGATTGGGTTTAGGGATTGTTTGTCAGTCCAATAGAATTTGGACTTATATAGGATCCATTAGTGAGTCTTA ACTTGGTTTGGGCTAACATGGGCCTAACCCATGAGCACTTGCACAACCTTCTGGTCTATATTAGGAGTCTTCCTTTGTAT TTTAAAGAACTTTGGTTCATTTTGAATGCATAAGGCATTTTAGTGAGGAGTGTGTCTTTTCCAAGTTCTTTCCTTAGAAA AACTCCTTTCAAGATTATCAAGGATCCTTCCTTGTGCCTCTTCTTCACCATATGACTTACCATTCCCCTCCTCCTATGGC TGATTGTGGCATCACCATCATCATCTTCTAGCTTTCACAATTTCGACCTTGTTCTACTTGTTCATGAGGATGCAAGGTGC TAGCTCCAACACTAGCTTCAAAATTCATGGAGTTTGAGCATGGATCCACATCACACAATCTCGTGTCTTGTAGTGTGTGT GTGTATATATTTTTTTTTGTGTGTGTGTGTAAAAGTGTTAAAGAATAACTTTATGTGTATCTTTTGCCACTCAATTTTCT TATATATTACTTTTACCATCTAGCCCAAAAATGTTCTACATGTTTGGGAGCGTGTTGAGCTAGATGTGAATGTGGTATGG CCCAATTTACTGAAGGCCCAATTAGACTCAGAAGTTAGAACCCTCAGTCAATTTACCAACAAAAAGAATAGAACACCAAA TCTTGTACACCTTTGTTGTCCCTTTTAAAATATCCAGTGTCTTTTTTTTTTTGACATCGGAAAGATAATTGCACCCGCCA GGAATCGATCCCTTGACCTCCCCCTACCCAACTCATATGTCCCCCAACTCCTACCACTTGAGTTATCCTACGGGAACATA TCCACTGTGTTTGACAACAACAAAAAATCTATTGGGACTAGGGATGTCAAAATTACCCACGCCCGTGGATACCCGCGGAT AAAAACCCGCTATGGGTAAAATTACCCGCACCCACGGGTACCTACGAATTTATTTAATGGATATTTTCATTATCCATTTA TTAATGGAGCGGGTACGGATATTGATGTATCCATACCCATGGATACCCACCTAATATATAAAATACTTTTTATATATATA CATAGATGTATATTAAGTCTAATATTTAATGAATTTGTGTTTGAGTTATAGTTCTCCTTCAAGTAAACTTATATAATGGT AACAAGAAGCCATTAGACCAAAAAAAAGGTAGAAAAGAAGTATTTTCCTTTACACATTGATTGATTGTAAAGTCCAATCT TAAATTTTATTTTTAATATAATTTTATTTTGAATAAATATATGTGAATCCATTTATGTTCATGGGTGTTGGGTGCCCATG GATATCCACGGATATCTTAAAATCCGATTAAAACCCACTTAATGTATATCCATGTGAGTATGGAGCGGGTATGGGTATAA ATTCTTACATGCGGAGTGGGTGGTGGGTATATACTATCCATGCCCACCCGTACCCATTGACATCCCTAATTGGGACTCTT AGCCCCTGTTTGGTTCAAAGGAGGGGAGGGGAGGGATTTTAATGGAGGGGAGGGATTTTAATACTTATTACGTTTGGTTC ATAGGAGGGGAGGGGAGGAAAAATATCTTCTTTTTTTGGTTCATGAGGGTGGGGAAGAGATTTTATGATTAAAATTACTT TTATACCTTTTTATATATTTACTTGAATTTAACAATAAATATAACATCTTTCTTCATCAACAATTATTCTGCATAATTTA AGCCTTCACCACAACTTCACAAACCATAATTTTTCAGACCGGGCACAGCAACAAAAAGGAGAAGGAAAATTTACCATTCA GTTCAACATACAACTTTGACTTCATAATCATGGGAAAATATATAATTTAAGAAACCACAAGTAGTAAATTGTAATACTCT GATAATTTTTCACCTCTAATTGCAGTTCAAGAAAGATAAGGAAGATGGTGATCCCAATGGTAATGACTCAAGCAGCGCTT CAAGAGGGAACTGGTGGGAAGGTACGTATAGTAGCTAAAGGAATTAAAAAAAAAATCAACTAATTAAGTTATAAATATCA GTAAACATAATTTACTCACTGTTTAATTAGTGCATCAATAATATTATTTTCGATTTATGCAGGTTCCCTTTATTATTGAC ATCACCACACCATATGTTAAAAAAAAACTCAGCATCCCACGGACAGGTATCTATTCCTCCCCATCATCCCATGTAATTAA AAGCATATATATATTCATAATTGATTCATTATTAATTAATGTAGCTCAGCTCATAAACATGGATTTGTTGACATTACTTT TGCAGGACGAAAAGCTCATGCTGCTTCTTTGGAAATAAATAAGTTAAGGTAAAATATGTATCCTGCGAGTGTAGTACATG GAGTCAACCAGCCAGTCATACCGCAACAGTTGCATGGAGCCAAAACTTTTTGTGCTTTGTATAATTTATGAAAACTTTTA TATTTGGATAACCAGCCTTTAAGTTTAAGACTTTTGTTTTATATCAATGATATCAATGATGTGATCCTCTTCTAGTATGG AGTTTGGGCGAAGCATCCCTCCTGTAGTTTAGGTTATTGCTATGACTAGTGATAATAATACTTCTTGCTTTCTTTTGAGT GTGCTCATGTCTGTGTATTCTTATGTAACTAATGCTCGTAAATGACTTTTCTTTATTAATTAATCATCTTTTCAAAAGTG ATCCACCAATATCTAAGCTATAGGTATACTCGGTCACATTATATAAATAAAGACTTAATTCACAAAGCTAGAATGTGACC AACCTATTGAGGAAATTGAACTCGATTGTTTACCAGGTGGGTGCATAAGCCCCTGAGACGCCGAGCTTTAAAAGGGGAAG TCTGTCTCTAAGTTGAACTCGTGTCCCCGAGGGTTAGCTCAAATGGTAAGAGCTAGGGGACATAAGAGTTGTGGAGGGGA AGGTCCAGGGTTCGAATCCTGGAAGGGAAAATTGAAGGAATTTTCTAACTTACTAACAACTAACCACTAACATTTGCCTA TCAAAAAAAAAGTTGGACTCGTCATCTCGGCCGCTTATCCATAACCTACTGTTGATATTCTTGAAAAATGACAAGCACAT TGAAAGGAGGCAATAGAATATCGCATGACTAAATTCACTTTTCCTACGTGAAGAGCATAAGAATTATCCTAAAACCAAAC AAATGACTAAATTGCATAAAAACACATCAAGTTTTTAATGTGAAATATCCCCTTATTGTGAGAGCTGCAATACATGACCT AGTCAAGAAAAGTCTTACTGTCAAAGTAATGAGTACAACAACATCTCCAACCAAAAAATGATTCCACAACCAACTCCTGC TCACTAATCATAATGAAGATATATCATTCATGTTCAGACTCATCATCAACTTGTTGATATTCTAACCAAAGCTCTCCCTA TTTTCTAAATTTGCTTCTAAGATGTGAATCCATCCATAATGAGGTAGTTAAATTTGTTAGGTAGCGTGGTGTTAGTTATC TGTTTATTAATTAGTTAATCTGTTAGGTAGCTAGTTGTTAGTCATCAATTTGTTATTTATGGCTTCATCTCTGCTAACTC ACCCTAATATTTTGGTTACCAAACAAAATGAAGAACACACTTAAAAGAATAAGTAGCAGATAAAGAAAACCATGAACTCT AACAGCATAATCTTAATCTGAATACAATCTTCTAATTGATACATTTGGTCTTATGAATTGGACCATTACAGATTTCAGTA AGAGAATGTAATAACCTCAATGAACTATGAATTCCTATTTCAACTAACAGATATTTTTTCTTCTTTTCAACTAACAATAG ATACTAGTTGTAAATGATACAATGAAAGGGAGCCATACATGCTAACAAAAGTTTCTGCAGGTTAATAAACTTCTTTCCTA TACAACCATCATTTTGTCTTGCTCCTCATGTCATGCGATTCCTTCTGACATTCTGGCTGTTCTGCTTTATTGCAATTTGG GTTTGTACCATAAACTTCAGTTGCATTGCTAAACATCTTTGTTGCTTTGGTCTCTCCTCCAAGATAATTTGGCAATGCTC TTCGCACGCCAAAGCCACGACGTTGAGGTTTGATGATGTTGTTATTGTTGATGTTGAGGAAAGGAGTTCTCTCTCTATCT CCCCTTGCCGGACTAATTAGAGGCACAGGTGATAATGCTTTGTGCGGAGTGCCTGAGACAGACACTGCCATTGAACGCGA AAGCTTCTGCTGAGAAACCACATTAACTGTCGGTGGCACCAATGGAAACCTATCTGAATGTTTTGTCAAGTCATCCACAT ATAGCAAATCATCTATACGAGCTACAATGTTAAATGCCATGCTCTCCAGAACTCTTGAATAGCCCTCTAGGATGGCTTTT CCAACATCCTGAATGTTTAAAAGAAAGATTACAATTAAGATAATGTGATTAAAAGATTACAATGATGCAAGTAAAATTAT TCGTAGACATTCGTATTATGCAGACACTTGACAGTGTCAAATAACCACTTAACCCAAAAGCTTAAGCTGTTGGGTAAGGG CAACTTTAATGGTTTTATATTATATTCTAACAGACAGATATCCAGAGTGAGAAAGAGAAAAGAGAGAAGTAAAGGATGTG ATATACAATGGATGTGATAGAAAGAGAGAAAAATTGCAATTAAAAAGAAAGAGAAGGGAAATGGAACCTTGTTGCACTGG ATTTTGCTGGTATCCAAGGTAGTTTGAGTTAATCCCGGGAATCGCTGCTCAATGAAAGTAGAATATTTTCAGCTCTTTCT GCCAGCAACTCTCTCTTGTCTCCATCAGCCATGAAGTCCTTGACAATTTCCCATGATGACTTTGTAGTTGAACGGCTAGG ATTCGGTGGGGGTCTAGAGTGACCTCTTCGACGCCATACATGAATTGAAGCTTCAACACGGTTAGCAATCTCTAGTGCAA CATGCTCAGAGGAGAGGTCTAAGCAATCAAGCAGGCATTCCGAAGAGAATTGCTCTGATGTGATGTAACGGTAAATGAAA TCCCCTAAGCAAGTTCTTCCATTCTGAAAGTTCAGATAATGTATCATGTATCTTGAATGAACTCTTTGTGAAATACCCAG ATATAAATTTGAAAACAATGTCATATAAGACTG
CDS sequence (LotjaGi1g1v0084600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATACCAAGAAAAAACAAGCAGGGGATTCTTCTTCATCAACCATGAATTTTGATCATCTTTTTGGTCCCAAGGACTC CTCCACTACTTCATCTTCCTCCGCCAGCCTCTTTGGCTCCATGTTTTCGCCACCACCACCTGTTGGGAGAAGAGAATCAA GAACACAAGTAGTGGGAGGCAGAAACTTCAGTGCACCAGGAACTCACAGCAGCAATACTAATAAAGGTGAAAGCAACAGT CGCATAATCTGCAAGAATTATCAGAATGAGATGGTGGAGGCTCAGCCTAGCTACTTCAGCTCTTCTATCTACTATGGTGG TCAAGAAAATTATTCCCCCAGGACCACCCAACCCCACCAGCATGTTTTCAAGAAAGATAAGGAAGATGGTGATCCCAATG GTAATGACTCAAGCAGCGCTTCAAGAGGGAACTGGTGGGAAGGTTCCCTTTATTATTGA
Protein sequence (LotjaGi1g1v0084600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDTKKKQAGDSSSSTMNFDHLFGPKDSSTTSSSSASLFGSMFSPPPPVGRRESRTQVVGGRNFSAPGTHSSNTNKGESNS RIICKNYQNEMVEAQPSYFSSSIYYGGQENYSPRTTQPHQHVFKKDKEDGDPNGNDSSSASRGNWWEGSLYY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 81 | 81 | - | – | |
| PANTHER | 3 | 152 | 150 | 1.0E-43 | – | |
| PANTHER | 3 | 152 | 150 | 1.0E-43 | – | |
| MobiDBLite | 8 | 40 | 33 | - | – | |
| MobiDBLite | 57 | 81 | 25 | - | – | |
| MobiDBLite | 105 | 152 | 48 | - | – | |
| MobiDBLite | 119 | 133 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0084600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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