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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0090800 |
| Transcript ID | LotjaGi1g1v0090800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Serine/arginine rich splicing factor, putative; TAIR: AT3G55460.1 SC35-like splicing factor 30; Swiss-Prot: sp|Q8L3X8|SRC30_ARATH Serine/arginine-rich SC35-like splicing factor SCL30; TrEMBL-Plants: tr|A0A0L9UW79|A0A0L9UW79_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0090800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:13212032..13216116) extracted from Lotus japonicus Gifu genome v1.2.
TCTAAAGTCACACTATCTAGGGTTTAAAGCAGGTTGATCTCGCTCTACCTCGCAAGCAAAGCAAGTTCCTTTTTCCCCCA ATTCTCTTCTTCCTCGCTTCAACTTTCGAGTTTCCTCTGTAATCACTCAAGGTACACCATTCTCATCATCGATTTTCTCA CCACTGCAATCTTTCAATGTTAATCCACATTCGAATTTGCAGTAATCTGCGTTGATTTTGATTTTCTGCATTTTTCAATG TTAGGGTTAGCGATGCGGAGGAGCAGTCCAGGATACTACAGTCCTCCTCGTAGAGGATACGGCGGCAGAGGGCCAAGTAG GAGGGGATACGGCGGTGGTGGAGGTGGAGGTGGTGGTGGAGGTAGGCGCGGCAGGGAAGGTAACCAAGGAAGCCTTTTGG TTCGGAACATTCCTCTTGATTGCAGGGCTGATGAAATTCGAGTTCCCTTCGAGCGTTTCGGACCCGTTCGTGATGTCTAC ATACCAAAGGACTATTACTCTGGGTAAGCAAGCTTCATGGGTAGCAAGGCCCTAATCTCGATTGAGACTTGTGTTTTGTT GTGTGTTGTATGTTGTGTTTTCAGATTGTTGAGATAGATTGGCTAAATTGTCTTCAAGGAGTCAAAGTGCTGGGTGGGAA TGTTCTGTCTTGATTTTGATTAAGCAGTTTGAATTTGTTTAAGCTTTTTGAAAATTTCAGAATTTAAGAAATTGATTGAT TTTGAGAATGGAGAAGTTTACATGAACAATAGATTTTACTCTACATGAAATCTCTTGAAGATGAATCACTTTTCTTTACA CAATCTTATAATGACTTTTTTTCATAAGCTAAAGCAAATGGGTCCTAAGTTTTTTTAGTATTTAACTTTTGCATTGTGAA TTAATTTTGGACTGGTTTGTCAGGGGTAATGTTGGTTTGAAATTCAAGTTAAAACAAGCCCAAGTACATTTGAAGAGGAG ATATCCACTTACTCTTTAACATGTTGGTTCCCTGAGTGTGTTAATGTTCATACCAAGAGAAACTATATAATTACACCATA CAATCAATGCGGGTTTGATTCAAGGTTGATTGGTTCTTGTCCAATTGAAGACTTCATCAGGAGGTTTTTATAGTTTGTGG TTGTGGGAGAGCTTTGAATTCAAGTGCTTCTTGTAAATACAACAAGAATGTTGAAGAATTTTTGAAGTCACTACTTCCCC TTTACTAGAAAAGGCCCGGTCAGTCACTACTAATCCTTGGATTTTAGCGGCTTTAATAATTTCAGTGTCCACTGCTGTGT ACGTGTCTCAAAGAGCTATAATTAAGTTGTGTAAAGAATGCTATGCTAAGTAATGTGATTTGAGCTGGTTACTGGGGTAT GCAAAGTCTACCTTGTCAGCTATTCTACGATCTGTCTCTGCCAATGTTTTTCTAGCAGTGTTAGAATGAAGCTCCATTTT TTCCCCATACAGAGAACCTCGAGGCTTTGCATTTGTGCAATTTGTGGATCCTTATGATGCTTCAGAGGCACAGTACCATA TGAACCGTCAGATTTTTGCTGGAAGGGAAATAACTGTAGTTGTGGCTTCAGAGACAAGAAAAAGACCTGAGGAGATGCGC CATAGGACCAGGTCCAGGTATTTATTTTGCTTTCTCTGCGTTGTTTGCCCTGTTGTGTAACTGATTGCAGAGTGTCTCTA GGTTAACTCGTTCCCTTTAATTATATTCCTATGATTTTTGTTTTGCAGTAGACCAGACAACTATGGAGGGCGTAGGTCTT CTCATCATGGTAAATTCATTTTTTAGACTTGGGTTAACTTTTAAAAATCTGTACTATACATGTCATGCTACCCATAGATG GAAGGTTTTCCTATGTTATATACAAAATACGCTTCACCTGCATTTCTAATGCATTTTATTCTTTTGCTACATTAAAACTT TTTTCCTTGGTGGGTGAATATGAAAATGAAATGATAGTTTGAGGGATGTATGTTATACCCTGGTTGAATTGCTAATTTGA TCATCTCTTTTCTGCTTAGAAATATTGTCTACTTTGTTGTCTTAAAGAAAATGGCTGCTGTGTCCTGATAAAGTCCTATG TAAATTGGTAATTCCTAAGTCTAGACCATTGCTTACGTATTCAGAATTTGAATTGGTGAATTTAAGCTCTATTGTGTCTA ATCTGATATATCAAAATAACAGTACCATTTTTTCGTAAAATACTTTTACTTTATGCACAAGTTTGCATCCCTAGTTTTCT TATTTTAAAACAGAAAGGAGAATGCAGTCAATCCTTGTGCCTCAATTACATAGTGAAGAATGATATATGCAATATGTGTC ATAAAAGGATGAAGGATCAATTGTTACCCAATTACTGTAATTGTACAATAATATACAATATAAGATCAGCCTAAAGCTAC CCTGTTTAACATTATTTTTACAGTCCTAATCTACTGGGGCATATAAATCATATGCACCTAGCTTCTTAGAGATATAATTG ATTTGAAGACATCTTAAAAGACTTAGTATGTTGTCTCCACAAATCAGTGTATGGTCTCAAACACTTATCATATTGATGCG CCAATCATTACTTGTCAGATTTGCTGGTCCTAATGGAAACTTCCCTATCTTTCTAAAAGAATTTAATTATTGATTTAGTT TGCTTACTGAAAACCCTATAAGGGCATGAAGGCAGGTTTTTTGGTCTGATGGATCCCATCATTGATTATCATGATGGGGA TCCGGATAATGCCAACTTGTCAAGGTGGTGATTGGTGGAAACCACTTTCTCATTGTTGTAATCATGCTTTTTCATTATGT TCTGTCTCTCATTTCCCTACTTAAAGTTTGGGTGGTTTAGTAATGTGCTGACTTGGTTCCACATTTTAGTAGTACAGATT TTTCATGTTTCTTGTAAACCTTAAGAATAATTAACTTTGTTTCTGTGGAGGCCTTCATATATTTTTAGTATTGTTTATAT TGAATCTTTGTTCTTTTGTTGACCCAAGAAGTGCACTGCTTTGTGTTTCTTATCAAGAGTTGTAACTTCTGTTCATTGTT ATGCCAAATCTATCAGGGCGTTCCCGATCTCGCTCCATTACCCGATCACGCTCACCACCTTATCACTCTGGTTCTAGAAG TAGATATCGCTCAAGGCAAGTTTCTTCCAAGTGTTTTCATTTTATTGTCAACTGATGCATGTAATCATGGGTTTAAATTG AATTTTCCAGGTCCTTTTCTCCTGCTCCAAGACGGCGTGATGATTACTCTGTTTCCCCTAGAAGGCAAGCAGAGCACCCT AGATCACCTAGAAGCCCTAGATCACCTAGAAGCCCTTCTAGGGAGCGAGATGGTGATCATAAGCGCAGGTCATACTCTCC ACCTTATGACAATGGTGCTGATCAGAACCAAGGCAATGGCTATACTGAGTGAGTTCATCTATTTTCTGTTTGGCTCTTTT ACTTGATTTTGCTTGGTTTCCTCCCTTCTCTGGGCTTGTGTTTTTACACTATATTCTTTAAAAAGGAAATCTGTATACAA GTCTGAGGCTGATCGAGGCCAGTTGAAGTCATCCCGCAGAGAATCAAGATCACCACTTCGATCTAGATCAAGATCTGCTG ATTTGTCACCCAGACATGGAAGATGAGGTAAAAAAATTACGAGTAGTATTTTATATATTAGGAGATTGGTTTGTGGTGTT TGAATTTGTTTCAATGGTTTTCATCTTGCAGGCATCAGGCCGTTTGCAATGTGTTGCTGGCTTCTGTACAACTCCTTGAA TTTATCAGGGCATTTACAAAAACCTCTAGTCTGCGTAAATTTCACATATACTATGGATGAATGTAGAATATTCAGGTTCA TTACTGGTGTGGTTTTTTGAACATTGCTGAACTTATATAGTAGAACTGGACCTTGCTTGGTGAATTGTTTTCGGCTTTGT TTTTGAATTTGCTAAACATCCTTAGCGTGATTTCAATTTAGCTGTTGCTGTTATATGTGAGCCCCTGTCACTAAAGCATG AATTCCCTGAAAGGCATATATACCAGTAGAGGCTTATTTTTTAGATATTATTCCATTTCCCTATGATGAATTTACTGCTC AAAAT
CDS sequence (LotjaGi1g1v0090800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGGAGGAGCAGTCCAGGATACTACAGTCCTCCTCGTAGAGGATACGGCGGCAGAGGGCCAAGTAGGAGGGGATACGG CGGTGGTGGAGGTGGAGGTGGTGGTGGAGGTAGGCGCGGCAGGGAAGGTAACCAAGGAAGCCTTTTGGTTCGGAACATTC CTCTTGATTGCAGGGCTGATGAAATTCGAGTTCCCTTCGAGCGTTTCGGACCCGTTCGTGATGTCTACATACCAAAGGAC TATTACTCTGGAGAACCTCGAGGCTTTGCATTTGTGCAATTTGTGGATCCTTATGATGCTTCAGAGGCACAGTACCATAT GAACCGTCAGATTTTTGCTGGAAGGGAAATAACTGTAGTTGTGGCTTCAGAGACAAGAAAAAGACCTGAGGAGATGCGCC ATAGGACCAGGTCCAGTAGACCAGACAACTATGGAGGGCGTAGGTCTTCTCATCATGGGCGTTCCCGATCTCGCTCCATT ACCCGATCACGCTCACCACCTTATCACTCTGGTTCTAGAAGTAGATATCGCTCAAGGTCCTTTTCTCCTGCTCCAAGACG GCGTGATGATTACTCTGTTTCCCCTAGAAGGCAAGCAGAGCACCCTAGATCACCTAGAAGCCCTAGATCACCTAGAAGCC CTTCTAGGGAGCGAGATGGTGATCATAAGCGCAGGTCATACTCTCCACCTTATGACAATGGTGCTGATCAGAACCAAGGC AATGGCTATACTGAGAAATCTGTATACAAGTCTGAGGCTGATCGAGGCCAGTTGAAGTCATCCCGCAGAGAATCAAGATC ACCACTTCGATCTAGATCAAGATCTGCTGATTTGTCACCCAGACATGGAAGATGA
Protein sequence (LotjaGi1g1v0090800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRRSSPGYYSPPRRGYGGRGPSRRGYGGGGGGGGGGGRRGREGNQGSLLVRNIPLDCRADEIRVPFERFGPVRDVYIPKD YYSGEPRGFAFVQFVDPYDASEAQYHMNRQIFAGREITVVVASETRKRPEEMRHRTRSSRPDNYGGRRSSHHGRSRSRSI TRSRSPPYHSGSRSRYRSRSFSPAPRRRDDYSVSPRRQAEHPRSPRSPRSPRSPSRERDGDHKRRSYSPPYDNGADQNQG NGYTEKSVYKSEADRGQLKSSRRESRSPLRSRSRSADLSPRHGR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 47 | 47 | - | – | |
| PANTHER | 8 | 228 | 221 | 2.5E-91 | – | |
| PANTHER | 8 | 228 | 221 | 2.5E-91 | – | |
| Gene3D | 40 | 163 | 124 | 7.3E-24 | ||
| SUPERFAMILY | 45 | 153 | 109 | 3.76E-26 | ||
| ProSiteProfiles | 46 | 124 | 79 | 16.517 | ||
| SMART | 47 | 120 | 74 | 2.2E-19 | ||
| Pfam | 48 | 117 | 70 | 3.8E-16 | ||
| MobiDBLite | 123 | 284 | 162 | - | – | |
| MobiDBLite | 123 | 149 | 27 | - | – | |
| MobiDBLite | 160 | 179 | 20 | - | – | |
| MobiDBLite | 182 | 229 | 48 | - | – | |
| MobiDBLite | 231 | 246 | 16 | - | – | |
| MobiDBLite | 248 | 284 | 37 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi1g1v0090800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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