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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0092500 |
| Transcript ID | LotjaGi1g1v0092500.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Senescence-associated protein, putative; TAIR: AT1G66330.1 senescence-associated family protein; Swiss-Prot: sp|Q4WYU4|BUD32_ASPFU EKC/KEOPS complex subunit bud32; TrEMBL-Plants: tr|K7KAJ8|K7KAJ8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0092500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:13580808..13585256) extracted from Lotus japonicus Gifu genome v1.2.
CTATATGAACTGTTAAAAAACCCTTTAATCGGAGAACCCTCTTCTAATAACTATCAAAGCAATTACTCGAAAACCATGTT CAACTGTTCTAGATATTCTAGTAATCTTGACATGAGTTATTATATTATGGAAAATGTCTCTAACTGACTTAAACATTGGT TCTCAACTCATTTTCTGTTCTTTTCATGTAATTGAATATTGTAAATTATTATAAAAAATCATTCGAGAAGGATGGGAAGA AATAAAAGTTTGTCCTGATTAATGAAAATTACTATTAACTAATTTTTTTTTTCCTTCAGTGGCATAATGAGCCTGGATGC CCGTGCACGCCAAGATGTTGCTTTGTTAGGGACAGAATTTCTCAAACTTGATGGTTAGCTCATTTACTTTGTTTAAATAA TGAGCTATTGTATTTTAACTTTGCATTACTTATTTCTTCCAATGAAATAATTATTTTCGTTAGCTAACTTTTCAAATATA TACTACAACTACAAGTCACTGTGTTTCACACACAAACATGGACCATGATATCCTCACATTAGCCCATGGAAGAAATAAAG AAGTTAAATGATATAGTAACTGTTTAAAATTAGCATCTTCATTTTGATGAGATTATTTCTTTTATATCAAGGTAGTTTAC TTTCCTTTGGAGCATATAGGGAATGTTAAAATTATTACTCCCTCCGTCCCTAATTATAAGCTAAAGTTGAGACTTATGTT TTGTCACTAAATATAAGCTAAAGTTGTAAAAGCTAATATTTTTTTCCATATTTACCCTTGCATTTATTGGTAGTGGAGCA CTATTCATAGTATAATAATTAAAAAGTTCTATCTTAAATAGGGGTAAACATGAAAAGTTGCACATTTTTTTCAAAAACCA AAGCATCAATTAAACCTTTCTTAATAAGCGTGATTTTTACAACTTTAGCTTATAATTAGGGACGGAGGGAGTATAAAACA ATATCAGTCAATTATGGTGATAACATATTGTAGTTATCCTTGGTCTTTACATGTGTTGAACTTCTCATCCTTCTACCTCC TTCTTCGGGTTCAAGAGCTTTTGCACCTTCATAGATGATTTTATTCGTATGTACCCTTGTATGGCAAACTTATATGTATA TTTTTATTTTCTACATTGTTGCATAGCTCGGGCAAGAGAGGATACAGAGAAAATTGACCGTGGTGTCAAGGAAAAAGCTG GGCGTCTTAATCGTATTGCTACTGTATGTATCACCTAGAATCTTCAAAACTTCTGGTACATGTTGGAGGTATAATGCTGA TTTATTTTATTTATTATAATATTTGCTCTGCAGATCTTGAAGGATATAGCCAAATCCAGATTGAAGAGTGCTGCTGATGA GCACTGGAGTGATGGGGCCTTAGAGGTATCTGTTAATCTTTAATCTCAGTTTTAATCCTTAGGATGATAATCCTGTTTAG TTTGATATGAAGTTCGTACTGATAAAATTTGCATCATGTGATACTTATATATCTTTTATATTTTGCTCATATCTCTGTCA CTATTTATGTACTCTCCAAGTTATTGGTTATCATTTATTGTTGATTGTTGGAGAGTGAAAAAAAAAAAAGATAAAATGTT ACAAACTATTGTAAATTTTACCTCTTTTTTTTTCAATTAAATTGAAGTTAGGTGTTTTTATTTAACATATTACTAGGCTC ATTGGTGGACAGAAATAAAAATATGTAAGATGTTATGCTATATAGTAAGACTAAGCATGGGTTTCCGTGGGCACATCTTG GAGTGGCATGATCTCCTAAACATGTTATTTAGGACACCTATGACATACTTGTGTAATACAGTAGGTATTTGACTGACATA TTATAGAAGAAAAACTTGAAATTCAGTCTTCTGGAGCTATTATTCATTGAGTTAAAAGCTAATAAAATAAATTAAGTTGT TATTTTGGTACTATGTGTCTCCAACTTGAATCTATTCAGGTTCTGGAATTAGTCTCTTGTGAATACAAAGTAAAACTTCC TACAATAGACCTGTAATAAGTTTGACGCTTCCAGATCCTGCTAAGGTGGGAGTTTTAAAACATTGGTTCCTCTTTATGTA ATGTACTTTTCATAAAAAGGGAAATACAAACCATTTGGTTTACTTGTTTTCATTTAATTTTTTATGCAATATCAGTGCAT AATCACTGTTAATCTTTCCTGGATTGATCAAAATCAATTTGTATGAGAAGATTTTGGATGGTGTGTATCTCAAGGTTTAT ATCATTGTGAAGTCACCCCAGTCGTATATAAAATGTGTATATATTATGTTATAATATATGATTAAGGGATTTGGTTTGGT TCATATGGTTCAGTTTATCCCAACCATAGACCAAATCACCAAATAATGCATTTTGTTTTAAACTAAACCAAATCAAACAG CTAAGTAAATGAACACAGTTTGGTTTAGTTTGCCCAATTTAGTTTTTATTCTTTAACACCTCCATTCAGTTCATGTCTGT TCATTGGATTAGACCTTTTTCCCATCAGATCTATAGTGTGTTCGAATTCTTGTTCACAATATGAGCAAAAATTACAAGAA ACAAGCTTTTACCAAAAACAGAGTTTAAACCTTTCTAAATAAAAGTCCAAACATGCTTTTAATTTATGAATTGTTTTGTT CTTATAGATGTTTCCTGTTTATTCCTATCCCATATGTATATATATATGAATTGCCAAAAAATACAAGGCTCCTTTTGACA TAACTTTTGAACTGTCAGGCTGATTTGCGTCTTGCTGACTTCCGTGCTAAGCAACGTGCAATGGAAGATGCCCTTATGGC CTTGGAGGTGATATTTTATGTTCTGCAAGTGTTTATTGTGGAACTTCATTTAGCATTTTATGATGTCAGGCATCGGGTGT TATATTCTTTATTATGAATCTGCCACTGTACATAACCTGTTTTAAAATATCATGCACATTTTTGTTTTGTTTTAAGCTCC AAGGTCTAAATTATTTCTACTGTATAAATATTGCAGCTCATCATAAACATCCATGACAGGATGGTCAGCAAGATGTATAA CTTGTAAGTCAAGTAACTTAGAAATCCGTGCTTATATAAATATATAATAATAATAATTATAAACTCTACAATGTTGCATA TGATGTTTCCGTGCAGTCCTCTTCGCATAGTTAAAGGTTCTCTTTCAGAAAATAATGTAAGAGGTCAAATCATGCTTGAA AAGAATGGAAAAGCCACAGATTCCTTTCCTGGGGATGTGACCACAGAACGGATTACTGCTCTTCAGGTCTTCCCTCATTT CCATTTTCATTTTGCGCTGTTTATGTGTAAAACAATCCTTCTTAAGCAATTGAATTACGGAACGATCGTATCCTAGTTCT AATGTATTAAGGTCTACAGGAAGCTTACTGGAGTATGGCATCAGCACTTTCTGAAGCAGATGGAATTGATTACACTGATC CTGAAGAGGTTTGATTCTCCGTTGAGTTCTGTTTCTTTCTAATCCAAGTTATTCAAATATTGATATTCTACACGCTCTTC TACTGGGATCAGCTTGAGTTGTTGATTACAACTCTTATAGACCTTGATGCAATGGATGGTAAACAAAGTGTATCTCTGTT AGCAGAATGTTCGAGTTCCCCTGATGTCAGTACTAGGTAAGCTTCCTGTGATATTACAATCTTTCAGGAAATCAGATTGC ATCCTCTATTATAGTTAAAAGGGATAAGCCATATTTTTCTTTCAACCAAATTTGTTGCTTTTAAAATTTCAAGCAGTAAT ATTATTCACATGAAGGATATTTTGTTACTGCTTCTATAATCTATACGCCATGATGATCAAGCATGATTGACATCATGATT TGAATTTGTATTCTTCATAAGTGACATATTCTCATCATTCCTTGACAAGGTTACAGCATTCTCAAATGCTGAAAATTAGA ATTTCCTGATACTAAGTTATGCAATATTAGAATTTGGATTAGTTAATGATGCAATATTAAAAAAAAAAAGAGATTAGTCA ATGATGCAAAGCTTCTACTGATTACTTTACTTCTAAAGAAATATATGGTAATCATGAATGCAACCTTAATCCTTACCTAA TTATGAGCCTTGTTTATTTTTGTATCAACTTCTAGACGCGCTTTAGCCAATGCACTGGCAGCAGCACCATCAATGTGGAC TCTTGGAAATGCAGGGATGGGGGCATTACAGGTTTGTGTCTGCAGTTTATAATTTTGACAGTTTCGCTTTTCTCCTGTTT GGCCGAAGTTGATGCATTTGATAAATGTTTTGCAGAGACTGGCAGAAGATAGCAACCCAGCTATTGCTGCTGCAGCATCC AAAGCTATTTATGAACTGAAAAAACAATGGGAAATAGAGGAAGGGGATAGCTGGAGGTTTATGATGGGCGCAAACACCGA GGAAGAAAAAGAACGCAGAGAATATGATAATGAAGAAGATACCAAATAA
CDS sequence (LotjaGi1g1v0092500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCCTGGATGCCCGTGCACGCCAAGATGTTGCTTTGTTAGGGACAGAATTTCTCAAACTTGATGCTCGGGCAAGAGA GGATACAGAGAAAATTGACCGTGGTGTCAAGGAAAAAGCTGGGCGTCTTAATCGTATTGCTACTATCTTGAAGGATATAG CCAAATCCAGATTGAAGAGTGCTGCTGATGAGCACTGGAGTGATGGGGCCTTAGAGGCTGATTTGCGTCTTGCTGACTTC CGTGCTAAGCAACGTGCAATGGAAGATGCCCTTATGGCCTTGGAGCTCATCATAAACATCCATGACAGGATGGAAGCTTA CTGGAGTATGGCATCAGCACTTTCTGAAGCAGATGGAATTGATTACACTGATCCTGAAGAGCTTGAGTTGTTGATTACAA CTCTTATAGACCTTGATGCAATGGATGGTAAACAAAGTGTATCTCTGTTAGCAGAATGTTCGAGTTCCCCTGATGTCAGT ACTAGACGCGCTTTAGCCAATGCACTGGCAGCAGCACCATCAATGTGGACTCTTGGAAATGCAGGGATGGGGGCATTACA GAGACTGGCAGAAGATAGCAACCCAGCTATTGCTGCTGCAGCATCCAAAGCTATTTATGAACTGAAAAAACAATGGGAAA TAGAGGAAGGGGATAGCTGGAGGTTTATGATGGGCGCAAACACCGAGGAAGAAAAAGAACGCAGAGAATATGATAATGAA GAAGATACCAAATAA
Protein sequence (LotjaGi1g1v0092500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSLDARARQDVALLGTEFLKLDARAREDTEKIDRGVKEKAGRLNRIATILKDIAKSRLKSAADEHWSDGALEADLRLADF RAKQRAMEDALMALELIINIHDRMEAYWSMASALSEADGIDYTDPEELELLITTLIDLDAMDGKQSVSLLAECSSSPDVS TRRALANALAAAPSMWTLGNAGMGALQRLAEDSNPAIAAAASKAIYELKKQWEIEEGDSWRFMMGANTEEEKERREYDNE EDTK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 104 | 104 | 2.4E-136 | – | |
| PANTHER | 105 | 234 | 130 | 2.4E-136 | – | |
| SUPERFAMILY | 125 | 209 | 85 | 1.5E-5 | ||
| MobiDBLite | 225 | 244 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0092500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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