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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0110000 |
| Transcript ID | LotjaGi1g1v0110000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polynucleotidyl transferase, ribonuclease H-like superfamily protein; TAIR: AT2G04420.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|I3S2I6|I3S2I6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0110000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:17196429..17197102) extracted from Lotus japonicus Gifu genome v1.2.
CTAGAAATGTCCATAGTTTGAGGTTTCTTTCAGGTTTATGGGGAAACTGGAAGTGGCGAAACAACTGGATATTTGAAGAT CAGTCTTGGAACTTGGAGACAGCTTGGCGGAAACTGTGTCACGAGCACGATAGCTTTGTGCTGATCAGCCGCACTCACAA CAACAAAGGAACGTTCATGGCTTCAAGGTGGGAACCGCCGCCTTTGGGAGCAGTGAAGTTAAACACAGATGGCAGTTATC GCGGTGAGGAAAATGTGATGGGCTGTGGAGGGCTGTTACGTGACCATGAAGGCAAATGGGCAGGAGGATTTGTGAGTCAT GAACTAGGTGGGAATGCCATAACAGCAGAAGCGAGAGCCCTCTTACAAGGTCTGAAGCTAGCTTGGGAGAAAGGATACCG CAACGTGAGATGTGAAGTGGATTGTAGTGAGCTCCTAGCAATTCTAGATGACAGAGAAGCACTGCTATATTTCCAAGAAG CTAGGGAAATAAGAGAATGGCTAAGAAAAGACTGGTTTATTGTCATTAGCCACATTGATAGAGAGTGTAATGCCTCAGCT GATTGTATGGCCAAATTTGCTGCTAGATCCCCTCCTCCTGGATCCAGGAAGTTAGACTCTCCATTTATGGAACTTGAAAC TCTCTTGTTGAGAGACAAGTTAGGTAGCTTTTAG
CDS sequence (LotjaGi1g1v0110000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCAAGGTGGGAACCGCCGCCTTTGGGAGCAGTGAAGTTAAACACAGATGGCAGTTATCGCGGTGAGGAAAATGT GATGGGCTGTGGAGGGCTGTTACGTGACCATGAAGGCAAATGGGCAGGAGGATTTGTGAGTCATGAACTAGGTGGGAATG CCATAACAGCAGAAGCGAGAGCCCTCTTACAAGGTCTGAAGCTAGCTTGGGAGAAAGGATACCGCAACGTGAGATGTGAA GTGGATTGTAGTGAGCTCCTAGCAATTCTAGATGACAGAGAAGCACTGCTATATTTCCAAGAAGCTAGGGAAATAAGAGA ATGGCTAAGAAAAGACTGGTTTATTGTCATTAGCCACATTGATAGAGAGTGTAATGCCTCAGCTGATTGTATGGCCAAAT TTGCTGCTAGATCCCCTCCTCCTGGATCCAGGAAGTTAGACTCTCCATTTATGGAACTTGAAACTCTCTTGTTGAGAGAC AAGTTAGGTAGCTTTTAG
Protein sequence (LotjaGi1g1v0110000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASRWEPPPLGAVKLNTDGSYRGEENVMGCGGLLRDHEGKWAGGFVSHELGGNAITAEARALLQGLKLAWEKGYRNVRCE VDCSELLAILDDREALLYFQEAREIREWLRKDWFIVISHIDRECNASADCMAKFAARSPPPGSRKLDSPFMELETLLLRD KLGSF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 139 | 137 | 4.7E-34 | – | |
| PANTHER | 3 | 139 | 137 | 4.7E-34 | – | |
| ProSiteProfiles | 9 | 137 | 129 | 9.765 | ||
| Gene3D | 11 | 137 | 127 | 3.1E-17 | ||
| SUPERFAMILY | 13 | 140 | 128 | 6.32E-17 | ||
| CDD | 15 | 133 | 119 | 4.86441E-34 | – | |
| Pfam | 16 | 135 | 120 | 2.2E-23 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA-DNA hybrid ribonuclease activity | Catalysis of the endonucleolytic cleavage of RNA in RNA-DNA hybrids to 5'-phosphomonoesters. |
Expression pattern of LotjaGi1g1v0110000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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