Transcript — View — Lotus Base

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LotjaGi1g1v0111200.1

Overview

Field	Value
Gene ID	LotjaGi1g1v0111200
Transcript ID	LotjaGi1g1v0111200.1
Related isoforms 1	LotjaGi1g1v0111200.2
Lotus japonicus genome version	Gifu v1.2
Description	LURP-one-like protein; TAIR: AT2G30270.1 LURP-one-like protein (DUF567); Swiss-Prot: sp\|Q8GWL2\|LOR7_ARATH Protein LURP-one-related 7; TrEMBL-Plants: tr\|V7B852\|V7B852_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0111200
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr1:17340480..17343999) extracted from Lotus japonicus Gifu genome v1.2.

CGACAAGTCTAATAGAAAAAGCAGACATTACAGCAGCCGAAAGCATCTCATTCCATTCTCCACATCCCTTACCTCTTTAA GAATTATTTATCTGAAATTTTTTTTTAATTAAACCCCAAAAAACCTTGCTTTATTTTTCTTTTTAGAAAATAATTTTGTA TTTTGTATGATAACAATGGATGGAAAGAGAGAGGAAGAAGTAGACAAAACAAACATGGAATTGGAAACTTCAGAGTCATC GTATCCAGGATCAGGGAGTTTGCACATCCCAATTGACCTCTTCGGTTCCAAAAAACACGCCGGAGCTCCACGTGGCGTCC TCGCATTCGCCGATGCGTTGGGTAACATACTCTTCACGGTGAACCGCCACCCACCCAATCGGAACTACAAGAAAAAGCTC TTGCTTGATGCCTCCGGCAACATCATCTTCTCCATCTACCGCCACGAGGTTAGTCTCTGTTTTCACTTCTGTGTCTTAAA TTGTTCTCGCAATTTCGACCCGAACAAAGGTCGTCTTCGGGCTCATAGGATTCGAACTCTGGACCTATAGGTTGAAACAG TCACTTTTTACCGACACTTGTCACGTAATTTTTCCCAAATAAAAAAAAAAAAAGACATTCTAGCATTTTTTAAATACAAT TTTTCTTATTTTGGTAGAAGGGGTCATGGAAATGCTATAAGGGGAATGGTGATGGAGACAAGGATCTTGTGTTCAGAGTG GAGAGGACTCTGAAAACGCTTACTAGAGTTGAATTGGAGGTTTTTTTCGATGGCGAGAGGCCGAACAATGAAGGTTGTGA TTTGAAATTGAGAGGATCGCCTTTTCAGAGATCATGTAGCATCTACAAAGACACTGACTTGGTGGCACAGGTACAAAATT GATTTTATTGAAGTCTAGGTTCATGATTCACCAGCTTCAAAGTTTTACAAGTATCCAAATTTCATTGTATTTTTCACCAT CATAGTTCATAGTTCATTTTGAGAGTGATGAATTGAGATATGTGTGAAATTGTATTGATATGAAGAAGAGTAGACTATAT AATATATCACAACTGAAACTGAAAATTAAGTAACGAACTTTCCCTCCAAAACTAACTCCTAACTACTTCTAACTGGTTCA CTCAAACAGTTTAACAGCTTCTAACTAATTTAAGTGGTCTAACTAATTACATTCGCGAAGTCTAATACTTTCCTTCAAGT TGGGAGATAGAGATTATGAACTCCTAACTTGGAAAGAAGAAATACAAAACGTGATTAGGGAAGGGGTTTAGTTAGCAAAT CAGCTAGCTGAAACTGAGATTGTACATGCAGTAATCGAAGGAAACTAGAGGCCATATGCTCCCCGATAAAATGCACATCT ATATCCACATGCTTGGATCTTTCATGAGAAGTTGGATTGGATGCTAATGCAATTGCAGAAACATTGTCTGAGTAGACGAT AACAGAAGCAATGCCTTCACCAAAGGCATGAAACAATCGATGAAGCCACAACAATTCTGAGCGAACACGTGCCAAGGCCC AGTACTTCGGCCTCTGCTGAAGATCTAGAAACTGTTGGCTGTTTTTTTGGACTTCCAATAGATCAATGCATCACCATGGT ATACACAATAACCTTTGGTTGATTCTCTGGTGGATAAACTTCCTCCCCAATCAGCATCAGCAAAGGCAGAGACTCTCTGC CAGAGAGAGCTTGGAATTGGACACCGCAGGATGCAAGAGACCTTGGCCAGGATTGGGTTTAAGGTAGTGCAGAATTTGAG TTACTGCTTGGAGGTGAGGAAGGCGAGGCTTTGACATGACCTGACCCAATTTGTGAACCGCATATGCGATATCTGGCCTA GAAACTGAGGTACAGCCAATGAGTCTTCAACACACTGAAGGTTTGACAAGTAATTCTCCATCAGTGTCATTAAACTTGTT ATTAGGATCCACGGAACAGATTGAGGCTTGCATCCCTGTGTTGCCAGTATCATCTAGTTACTGTAAAGCATACTTTCTCT GTGAAAGATGTATGCCTTTGCTACTTCTTGCTATCTCTAGGAAAAGAAAAAACTTAAGATCTCCAATGACCTTCAATTGA AAGAGTTGTTGTAATTGCAATTGAACTTGTTCTAATACCATATTGAGAGTGATTAATTTAGTAAAGTTTGAAATTGTATT GATCTGAAGAAGAGTGCACTATATATATGTACAACTGAAGCTGAAAATTAAAAAACTAACTTTCCCTCCAAAACTAACTC GTAACTACCTCTAACTGATTCACTCTAACAGCTTATAACTAGTTTAATTCCTCTAACTAATTACACTCACAAAGTCTAAT AGTTCATATATAATTGAAATTATCTTGAATGTTGAACTTTTGTGTATGTGCGTGTGTTTGTATAATTGTATTCATATCTG GAATAGTATTATAGATACATTATGCTTAAGAATACTGAATATGAATTGAACTTCTGTTACTAAGAAGCCTGGGCTTGACT TGAGGACAAGAGTTTCGCTCTTGATTTTAAAGCTGACATTTGTGAATTATGATAGAGGATTCTCTTGGTGCCATTTTATA TGATCATAGCATATCTATATAGTACATCTGGAACATGAAGAAGAGAGGAATTAAATTTGGAAACTGAATATACGTGTATC TCTTGAAACATGATTGGCTCCCTCAGCTTGAGAGAAAATGACTACACTCTTGAACGTGCATTATTTCAGATGATCAAAAA GGTTAATTTTGAATTTGTACTTGTGTGCAGGCTAGCTTGATGTACAAGCTTCATCAACTGTATGTCAGTAGGGGTAAATT TTGCCTTACAATTTTTCCTGGGACTCTAGACAATGCTCTTGTTGTGGCTTTGTTTGTAATATTTTTGAACGGAAGAAAAT AGTATCATTGACAGACGGCATTCAATTGCTATTTATTTGAAACAGAGTTATACCAATCTTAACACAGATATGTACTCCAA ACACTAATTCACACATCAGAGTATGAGATTGGAAATGCGGTAGATTTTAATGTTTGGGGGAAAAAAATTCTTGAAGAAGC TACTAGGAGAAGCTTTTGTTGGGGAAAGTGATTTTGTGATGTTTATAATGGATTCAAACATGCTACTAATTGGTGAGTGA TAGTGAGGAAGTGCAGCAGCTAGTTTAGAGATGAGGTTACTCTACCCTTTTTAAGGATTATCTTGACCATATATCTCTAC TCAATGTGAAACTTCTCAACACACTTTCTCACGCCCAAAACTAGCTCCGATACGATCTTAGAATTCAGGTCAGGTTTAAC TCTACCTCAAAAGCTAGCTTAGAGGTGAGAGTTAATTTACCAATTTTTTTTTAAAGGTACCAAAATTAATCAGTTATGAA TTGGATTTGACAACATTACTCTATAAAAAATCATTTACAAAAAAGTCAACACTCGCATCCAAGTCCATGTTCTTTTTCAT CAACACTCTCTTCTTCGTCAACACCTCCTCCTCAACAACAAAGCAAATTATAGCTTCCATGTTGATTCTTTAAAATATTG

Download Genomic Sequence

CDS sequence (LotjaGi1g1v0111200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATAACAATGGATGGAAAGAGAGAGGAAGAAGTAGACAAAACAAACATGGAATTGGAAACTTCAGAGTCATCGTATCC AGGATCAGGGAGTTTGCACATCCCAATTGACCTCTTCGGTTCCAAAAAACACGCCGGAGCTCCACGTGGCGTCCTCGCAT TCGCCGATGCGTTGGGTAACATACTCTTCACGGTGAACCGCCACCCACCCAATCGGAACTACAAGAAAAAGCTCTTGCTT GATGCCTCCGGCAACATCATCTTCTCCATCTACCGCCACGAGAAGGGGTCATGGAAATGCTATAAGGGGAATGGTGATGG AGACAAGGATCTTGTGTTCAGAGTGGAGAGGACTCTGAAAACGCTTACTAGAGTTGAATTGGAGGTTTTTTTCGATGGCG AGAGGCCGAACAATGAAGGTTGTGATTTGAAATTGAGAGGATCGCCTTTTCAGAGATCATGTAGCATCTACAAAGACACT GACTTGGTGGCACAGGTACAAAATTGA

Download CDS Sequence

Protein sequence (LotjaGi1g1v0111200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MITMDGKREEEVDKTNMELETSESSYPGSGSLHIPIDLFGSKKHAGAPRGVLAFADALGNILFTVNRHPPNRNYKKKLLL DASGNIIFSIYRHEKGSWKCYKGNGDGDKDLVFRVERTLKTLTRVELEVFFDGERPNNEGCDLKLRGSPFQRSCSIYKDT DLVAQVQN

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	18	18	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	28	28	-	–
PANTHER	PTHR31087:SF85 View details on PTHR31087:SF85 Search for proteins/transripts with this domain View external data on PTHR31087:SF85	20	166	147	3.2E-49	–
PANTHER	PTHR31087 View details on PTHR31087 Search for proteins/transripts with this domain View external data on PTHR31087	20	166	147	3.2E-49	IPR007612 Show description in modal box View details on IPR007612 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.20.90.20 View details on G3DSA:3.20.90.20 Search for proteins/transripts with this domain View external data on G3DSA:3.20.90.20	31	168	138	3.0E-24	IPR038595 Show description in modal box View details on IPR038595 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF04525 View details on PF04525 Search for proteins/transripts with this domain View external data on PF04525	36	167	132	2.8E-18	IPR007612 Show description in modal box View details on IPR007612 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF54518 View details on SSF54518 Search for proteins/transripts with this domain View external data on SSF54518	55	167	113	3.66E-17	IPR025659 Show description in modal box View details on IPR025659 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0111200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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