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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0113100 |
| Transcript ID | LotjaGi1g1v0113100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT1G78750.1 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q9ZV93|FDL10_ARATH F-box/FBD/LRR-repeat protein At1g78750; TrEMBL-Plants: tr|A0A072U8R3|A0A072U8R3_MEDTR Cyclin-like F-box protein; Found in the gene: LotjaGi1g1v0113100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:17660251..17665280) extracted from Lotus japonicus Gifu genome v1.2.
GCCGCGAAACACCGCGGCGTCGAGAACCTTGAGCTGTCCACCTCGCGGATGATTATGGCCTTGTCGTCGACTAGCTTTTT CACCTGACCTCACTAACCCTCGTGGTTTTGAAGCTGAATCGATTTTACATGGGTGCTCTTGATTTTATGTCGGTTGATCT TCCCTTACTTAAAACACTTCATTTGACAAAGACTTATTTTCGACAAAGGGAGGATTTCTGTTCGAAAATAGAAAATAGAT TGGGTTGTGAACTTAGTCGTGTGGCTTTCATCCATTATATAGAGCAAGTACACATGGTGGTGGGGATGGATTAGTGATTC TCCACACACTCAATTGCAATGCTTTGATCCCATAAATATAGGCAGTGTTCTACCGACTTAGACATGTCGGTTTACATTTT TTTATTTTTGGTTGTTTCTAGTTGTTTAAACAACATTCTAGACTAGGTAGCAATCTAGATTTCTCTAGAAAATTGCAGCA CTTTCTAACACTCCTCTTTGATGCAATTTTCTTGTGACTCCAAACATAGCTTGTAGCTCTTCAAATCTTGCTCTGGGCAA TGTCTCTGTGAATATATCTGCTAGCTGATCTTCAGCTTTGCAATAGTTGAGCTTGATCTCTTTAGTTGTCTTTGCTTCCA CCGTTGATGGTGCAATTTTAGCTGGCTTCACTTTTGAACCATTCTTCTTGCCTCCAACCCATTGATGTGAGACTTGTTGT TGGCTATTTCATCACTCTCATCAAATCCAACTAGAGTCATTTTGTTGGACATGGATTGCCTGGGCATGTACTCAAGCGGA GCCTCAGAGGTCGTTGTCATAGTCAGGCTTGTGCTCCTTCTAGATGAACTTGAGTCTCAGAGGCATGTGGCTAGTTTTTT TAGATGATAGATTTCACCAAAAATAGAGATGGTGATAGATGAAGGTCGAGTGATATTAGCCAAAGCTTAGAAAAAGTATA GAGATGGGTTAAGAGTACAAGGGTAGTTTTTAAAATAGTAGGTGAGTAGTATCACTATGCCCAGTGTATGACCGAACGCA GCTCTGATACCACTGTTCGAAAATAGAAAATAAATTGGGTTGTGAACTTAGCCATGTGGCTTTCATCCATTATATAGAGC AAGTACACATGGTGGTGGGGATGGATTAGTGATTCTCCACACACTCAATTGCAATACTTTTGATCCCATATATATAGGAT GCTAAGGCACTAGTTAGAGAGGAAGTGGCTTTATTAGTTTGCAGTGATTCAATTACAAAGTCTGAAGGCCTATTTATAGG CTCTTCATAACCGACTATACAATGTCGGTAAACATTTTTAATTATTTACATACTTTTAGATAGTTTCTAGAATTTACAAG AGATTTTAATGTCTAGATTTTTCTAACCCTATATGATGGTGTCCTATATGATGGTGTCATGTAGAAATTTGTAGAAATTT GCAGCACTTTCTAACAATTTCAAGAAACTTCTTTCTGGATGTCCCAACCTCGTGGAATTGTGTGCTCCAGTTTACTTTCA AAATGGTGACTTCAACTACACTAGAGGGTATAAAACCTTGCCCAAGTTGGAGAAAGCATGTGTCAGTGCCAGTGCATTGG ATGTTGCTTTTACTGTGATTGATAATGTCCAGTTTCTACGCATAGTGCAGGTATATATGGAAATTTGGTTACATGATCAG TTCTTAATTACTTCTTATACTCATTCAATTTCATTTTGAGTAAAATTTTGCAGATGGAGCACATGAAAAGTGGCACAATT TTGCCCGTGTTTGTGTTTCGAAACTTAATAAGCATTGAGCTATGCTTTGATAACTACTTTTCAGTCTGGGATGGAGTACT GGAAGTTCTCTCTTACTGTCCCAAGCTTCAAAATCTTGCCATAGAAAAGGTTTCGGTCTCTTATGGTCATTTTTGTTTGC TCTGACCATATTTTTCATAAATCTTACTAGTTTGTCTATGTTTAACAGCCTGCTTTCAAGGGACTTTACAAAGATGGGGT ACTGGTAGAGCTCCCTTATCGTCCCATGCTTCAAACTCTTATTGATATGGTTTGTACTGTACTGCTGTTTATGGTCATTT TTGTTCGTCCTATTCTAGCCATATCTTTCCATGAATCTTATATATTTTCTTTATATTTAACAGCAATTTCACAAAGAGAA GTGGGCAGAACTTGTTCCAGAATGTGTTTCATTACATCTTACAACATGCTCTATTCGAAACTATCGTGGCTGGGATGATG ATTTTAAATTTGCTGAATTTATCTTGCAGAATGTGAGCTTTTTACAAACGATGACACTTCACAGTGCCCCTTCCAGAAAG GAAGAAAAGCAATGGGTTTTCAAACACTTATCCTGGTGTCCGAGGATCTCTACCGCATGTAAAATATTTTTGAATGCAGA GAAAGTAAACCAACAAGAACATGAAAATCTAATAATTGCCCCTTGAGGTATTCCTCAGCAGAACAGTTTCAAGTTCAACA AGAGCTTTATCTTTCTGTACATGTTCAATTGGCTTTTGTTAGAGGAAAAGAATATTTTTTTTGAAATGATTCAGGAGTTC GTCTAAAGAAATTGATCTAGGAGAAAAATAAAGAATTTAATTGGAGTTACATTTTTAGTATATTTACTGCCTTTGTAATT TCTGGAAGTAGTGGTTCATGGTGGAGCTTAGTCAAAATGATAAGGTAAAATGCTCTTAAAAATTGACATATGTTTGCATC ATAGTAGTAATGCAGAGTATAGTTAAAATGTTATCTTTTCCATCTATCTGGATTATGGGTGTATGCCATTTTCTAATTAG TTTGATTTGGATATATATATTTGGTTTTGTTTCCTCTAAGATTTGAATGAAGATTTAATATAGTGGCCTAAAACATGGTT GCCCTGTATCATCATACTCGCTCTGCCTATTTATTCTTCTAGAGGAACATTAGATTTCTATAGCATTCTCAAAGTTGGCA ACAAAAATATACTCTTCTAGAGAACTAGCAAATATCTATTAAACCAAATAAACTACTTTCATGCTGAAATATGATCTAGT TGGGGTATATTGTTTGCCACTATTTAAATGGCCGAATTATGAACTCATGATATGATATGTGCTTGAGAACTACTAAAAAC AGTATTTAACTTCTATGCGATTTTGGGTTCATTTGGCTTGTTTATGCTTGATAATTATAGGCTATAGCTCAAATCCATTC TTATGAGATTTATAAAAGTTCTTATGTGTTATGGGAATGGATGATTGTGAGTTCCTGATTTTACCTTTGTATACATGACA TTAATCTAATCTAATCTCTTCAGCCTTCTCCCCTATATATATTGCCTTTTCTGTATAGAAATGTGCAGCTAGCAAAGAAA AGAATTTTCCTGTTGAGTGGATTTGATTATCCTTTTTGTATATAGAGATATGATTATTCCTTTGTTGTTATACACTAATT TTGTTGACTGGTACAAGGTCTTCTTTTTATTGGTTTATGAAAGGTCTTTTTACACATTTCTTTCCAAAAGGCTAAAGTAG AAAACCAAATAAGTGTGAAAATAAAGAGAAAGCAATTATTTATGTTGTAATTCACTACTTGCCAAACTGGAGAAGCTGAA AGGGAAATAGAACATTGAAAAAATGATGAATGCAATATTGGTAAGTACTTTGACATTTGATAACTTATGGTGAAAGGCTA TTTTAACTGCATATGTCTACTTTGATTAGGATTCCTCTATAAGAAAACGAAAAAGACACCCTACGAATTTTTGAAAGGCC CTGATTGAAATATTTAAAAATGTTGGGGCTGTGCTGTTTCAAATTTGTAGGACTGGTATTCCTCCTTCTCCACGAAGTTC CTTTTCTCATCTTGGTCATGACTTGGGATTTGCTTTTGGTTGCTGAATTATTATTCTGCCTCTGCTAGGCATATTTGTTT CTTCTACTACAGTGGCTGCAGTGGATAACTGTTATAAAATCACACTTATCTAGAAGTCTTTCATCCAAGACGCGGCTGCA GTGGATGTATTCCCATGGAGTCTGCTTTTACCAATTGCGAAGAATTTCCATGGCTTAGACTGCAACAATAAAGAATGAAA TTGAGTAATTTAAGTGGAACTAGCTGTGCTGGCTGTTGGTTCTTTTTGCTACCTGTGAACATAATGCTATTGCGAATGAT ATTCAAAAGTCACACGGCGACAATATCATCTTTAACGGTTGAGTGAGTGAGTCTTGTGCATGGAGCTTTTGGAAGTTTGG TCTTGTTTTGCACTTGTTGCAAGCATTTTATATATTTGCACATGTTGAGTTTGCAGCGGTGTTCGTGGAAGTTGCAATGT TGCACAGAATACTCTCTTCTGCATTGGGTCATAGATGCACCATTAATGAAATAGATCAACATAGTTTAGAGGTCCAAGAT TGCTTCAATTTTTTTGAAAGAGATGCTTAAGAAGCCAGAGAAGACAAGGTTCCAGTGTTCTACTAATCCATCCCTTATAA GAATAGTGGGAGAATGACTTGAATGCTTTTAAGCTCACTAGTGTGTTAGCGGTTCTATTCTAAATGGCTAAATTATGAGA GCTAAAAGCCGCATATTTCAGTCAACTTTTGTTAACTTGTCCTCATGTCCCTTGTTTAATTTGTTGTTTGATGCTATCTT TTGTTGCATTCATCTTCTGATTTGTATCCGGGTAACTAAGCCTCTATGTGAAATAGGTTGGGGTATGCTGAGAAAATAGC TGATGTCTGGACCAAAGTTGCTGAAGAGACCGATGGATACGTGAACGAAAGCACTTAAGCTCTGGCTATTAATTTGATTT TCATCTTTATTCATTGATGTAGCATTCCCAGGAAATATGTAGTCATGACAATAAACACAATGAAGCACTTTGGGGGCTTT TCCTCACTTGTATCACAAAGAACATTTCTTACACATCATTCCAAGGATACTTGGTTGTTGTACATTACTTGCTATTTGTT TGGCTCCTGCAGCTTTTCCAAGGTTTTTGTTTACTACTACATGTTTATATTTTGTTTTCCGATACTCCAA
CDS sequence (LotjaGi1g1v0113100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGCACATGAAAAGTGGCACAATTTTGCCCGTGTTTGTGTTTCGAAACTTAATAAGCATTGAGCTATGCTTTGATAA CTACTTTTCAGTCTGGGATGGAGTACTGGAAGTTCTCTCTTACTGTCCCAAGCTTCAAAATCTTGCCATAGAAAAGCCTG CTTTCAAGGGACTTTACAAAGATGGGGTACTGGTAGAGCTCCCTTATCGTCCCATGCTTCAAACTCTTATTGATATGCAA TTTCACAAAGAGAAGTGGGCAGAACTTGTTCCAGAATGTGTTTCATTACATCTTACAACATGCTCTATTCGAAACTATCG TGGCTGGGATGATGATTTTAAATTTGCTGAATTTATCTTGCAGAATGTGAGCTTTTTACAAACGATGACACTTCACAGTG CCCCTTCCAGAAAGGAAGAAAAGCAATGGGTTTTCAAACACTTATCCTGGTGTCCGAGGATCTCTACCGCATGTAAAATA TTTTTGAATGCAGAGAAAGTAAACCAACAAGAACATGAAAATCTAATAATTGCCCCTTGA
Protein sequence (LotjaGi1g1v0113100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEHMKSGTILPVFVFRNLISIELCFDNYFSVWDGVLEVLSYCPKLQNLAIEKPAFKGLYKDGVLVELPYRPMLQTLIDMQ FHKEKWAELVPECVSLHLTTCSIRNYRGWDDDFKFAEFILQNVSFLQTMTLHSAPSRKEEKQWVFKHLSWCPRISTACKI FLNAEKVNQQEHENLIIAP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 11 | 156 | 146 | 2.8E-20 | – | |
| PANTHER | 11 | 156 | 146 | 2.8E-20 | – | |
| Pfam | 89 | 131 | 43 | 3.6E-11 | ||
| SMART | 92 | 163 | 72 | 3.9E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0113100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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