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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0114100 |
| Transcript ID | LotjaGi1g1v0114100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT1G78750.1 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q9ZV93|FDL10_ARATH F-box/FBD/LRR-repeat protein At1g78750; TrEMBL-Plants: tr|G7K562|G7K562_MEDTR F-box/RNI/FBD-like domain protein; Found in the gene: LotjaGi1g1v0114100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:17932601..17934194) extracted from Lotus japonicus Gifu genome v1.2.
CGCTCGTCCAGCACCACCCGATCGAGACGCTCTCCATCGTCTCTAACTCTCAGCTCTGCCAATACCGAAGCCGGTTCAAC ACAGACGAGTGGATCGAAGCTGCAAAACGACGTGGCGTTAAGAATCTCCAGCTGTCGTCAATACATCTTAACTTGCGCTT GTTGCCCGGTATTTTCACCTCCTTCAAAACCCTCGTGGTTCTGAAGCTGAGTGAGATAATCATTGAATATGGTTCTGTTG GTCCTGTTGATTTTCCCTCACTCACAACCCTTCATTTGATTAACGTTTTGTTTCGTCAAAGGGATGATGTGATGAAAATT CTTAATGGGTGTCCCATTGTTGAGGATTTGTATGTTACAGCTCCCTGTTTTGAACTAGGCTACCCTACAGGGTTTAAACC CATGCCCCAGGTTGTGAAAGCACATATCAACGCTTTTAATGTTCCTTTCAATGCAATTCCTAATGTAGAGTCTCTACACA TTGAGGAGGTATGTAAGAAAATCTGGATCTTTTCGAATTGCAGTTTAAAGTTATGATCAAATTCTTACTTACTTCTTACA CTCATATGCCTGCATAAACTTGCTGTTACTGTCATATTCCTCGATTGTTCTTGGAAGGGTGGGTGCGGGTTTTAATATCA TCAGTGGAAAGGTGTTGATCAAGTGGTTCTTGATTGCTTGTTGTGTTTTTAGCTATCTGTAAGGGATAGTGGCTGGTGTC ATCGTTTGCTTCTTTGGAGTTAGTAGGTTATGTTTTTTGGTTTTCTTATCTGTACAGTAGTTGAGTAGCGGAAATTCTTC TGGTTTTTTGGTTTTATTTTGCCTAGTGCTACCTTTTGTACAAGGATTGAAATACTCCTAGTATTTCTTTTAATTCAAAT TTTGCTTACCATGAAACATTTTGCAGATTGAGCGTAGGGACAAAGACAATTATATCAATTCCTACTACAGAGAAATGCCT GTGTTTCGAAACTTAATCAGCCTTGAGCTAACCTTTCCTCGCTTCCGTGGCTGGTTTGATGTAGTGGAAGTGCTTCCTTA TTGTCCCAATCTTCAATCTCTTGCCATTGAAAAGGTTTCTAGTGGTTAATTTATGGATATATCATTTTTGTTTGTGCTCT TCTCGGTTTATCTTTTCATAAATCTTGATTATTATTTGTCTGTGTTTAACAGGGTAAGTACAGGAGAATTATCGAAGATC AATTGGAACATACCATAACACCTGTTGTTCCAGAATGTGTTTCATTGCACCTCAAAACATGTTCTGTTAGACACTATCCG GTTAAAAGCATGTATGAAGATTTTGATTTGGCAGCATATATCCTTCAAAATGCGAGGGTTTTACAAGTGCTGACTATTCA CATGGACCCTTATCACTCAACGGAATCTGAGAAAGACCAATTCTTCAAATATTTATCCAGGTGCCCGAGGATCTCTCAAG CATGTAAAATTGAGTGCAACTAGGTTCTAAATATCTGCTGTTTCCAATAATTTCTTCTACCCATGAATGCAATTGCTATT GTTGGATTTGAGAGGATATGGTCTTATGTCGTTATAAACATGTGTTACTTTTTTCCTATAAACTTTTATTTGTT
CDS sequence (LotjaGi1g1v0114100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAATTCTTAATGGGTGTCCCATTGTTGAGGATTTGTATGTTACAGCTCCCTGTTTTGAACTAGGCTACCCTACAGG GTTTAAACCCATGCCCCAGGTTGTGAAAGCACATATCAACGCTTTTAATGTTCCTTTCAATGCAATTCCTAATGTAGAGT CTCTACACATTGAGGAGATTGAGCGTAGGGACAAAGACAATTATATCAATTCCTACTACAGAGAAATGCCTGTGTTTCGA AACTTAATCAGCCTTGAGCTAACCTTTCCTCGCTTCCGTGGCTGGTTTGATGTAGTGGAAGTGCTTCCTTATTGTCCCAA TCTTCAATCTCTTGCCATTGAAAAGGGTAAGTACAGGAGAATTATCGAAGATCAATTGGAACATACCATAACACCTGTTG TTCCAGAATGTGTTTCATTGCACCTCAAAACATGTTCTGTTAGACACTATCCGGTTAAAAGCATGTATGAAGATTTTGAT TTGGCAGCATATATCCTTCAAAATGCGAGGGTTTTACAAGTGCTGACTATTCACATGGACCCTTATCACTCAACGGAATC TGAGAAAGACCAATTCTTCAAATATTTATCCAGGTGCCCGAGGATCTCTCAAGCATGTAAAATTGAGTGCAACTAG
Protein sequence (LotjaGi1g1v0114100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKILNGCPIVEDLYVTAPCFELGYPTGFKPMPQVVKAHINAFNVPFNAIPNVESLHIEEIERRDKDNYINSYYREMPVFR NLISLELTFPRFRGWFDVVEVLPYCPNLQSLAIEKGKYRRIIEDQLEHTITPVVPECVSLHLKTCSVRHYPVKSMYEDFD LAAYILQNARVLQVLTIHMDPYHSTESEKDQFFKYLSRCPRISQACKIECN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 203 | 200 | 3.4E-25 | – | |
| PANTHER | 4 | 203 | 200 | 3.4E-25 | – | |
| Gene3D | 29 | 210 | 182 | 1.5E-5 | ||
| Pfam | 134 | 177 | 44 | 1.9E-9 | ||
| SMART | 136 | 211 | 76 | 2.6E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0114100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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