Transcript — View — Lotus Base

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LotjaGi1g1v0121800.1

Overview

Field	Value
Gene ID	LotjaGi1g1v0121800
Transcript ID	LotjaGi1g1v0121800.1
Lotus japonicus genome version	Gifu v1.2
Description	Glycosyltransferase; TAIR: AT2G29730.1 UDP-glucosyl transferase 71D1; Swiss-Prot: sp\|D3UAG2\|U71K2_PYRCO UDP-glycosyltransferase 71K2; TrEMBL-Plants: tr\|A0A151U0Q6\|A0A151U0Q6_CAJCA Glycosyltransferase; Found in the gene: LotjaGi1g1v0121800
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr1:19180534..19182611) extracted from Lotus japonicus Gifu genome v1.2.

CCTTGTTCTGCGATCTTATGTCATAAAAGATCAATTGAAGGCTTGAAAATGTCACCACTAAGACCTCAAATGCTAGACAA ATACTATACTACTTGTATGGATAATTATTTATACCTCAAAAATGAGGTGGAATGAGGTGGAAGAGGAGAGAGATAGAAAG AAATGAAAAAAGTAAGAGAAAGAAAGTATAAGATGTGATAAGTGATAAGAGGAGAGAGATAGAGATAAAAATAGGTGGAA ATAAAGTGTAAAAAAGGAGTTGTGTATATATCATTGTTGCTACTTGTATAGGAACCCTCACTCTCCACAAAACCAAGAAA TTAACTGAAGAGAATGGCTCTGAATGAGAAGAAAACAGAACTGATCTTCATTCCCTCACCAGGAATTGGCCATTTAACCT CAACCCTTGAATTTGCACAGCTCCTGATCAAGAGTGACAACAATCTTTCCATCACAGTGCTCACTATCAAGCTCCCAACC ATTCCCTTTTCAAACTCATACATCAGATCAGTTTTGGCTTCACAGCCTCGGATCCAACTCATTGATCTCCTTGAAGTAGA ACCACCCCCACAGAAGCAACCACTTGGACCTCCAGCATACTACATGTGGTCCTACATGGAAAGCCTCAAACCCCATGTCA AAGTCACTATGCAAAACATTTTATCAACTAATCCAAACCCAGTTGTGGGCTTGGTCCTAGATTTCTTCTGTGTTTCCATG ATTGATGTGGGAAATGAATTGGGTATTCCTTCTTATTTGTTCTTCACAACAAATGTTGGATTTTTGAGTTTCATGCTTTC TCTTCAGAAACGTCAGATTGAGGATGTGTTCAGTCATTCTGATCATGAATTGTTGATTCTGGGTTTCTCCAATCTAGTTC CTTCAAGTGTTTTACCTGATGCTGCTTGCAACAAAGATGGTGGATATTTTGCCTATTACAAGCTTGCTGAGAGGTTCAGA GAAACCAAAGGGATTATTGTGAATACTTTTTCTGAGTTGGAGCAGGATGCTATAGATGCATTATCTGATGGCCATACCCC TCCAATCTATGTTGTTGGTCCTTTGATTGATTTCAAGGGTCCTTCTAACCCAAATTTAAACCAAGCTCAGCACAACAGTT TGTTGAAATGGCTAGATGAGCAGCCACCTTGCTCTGTTGTTTTTCTCTGTTTTGGAAGCAGGGGAAGCTTTGATTCGTCT CAAACAAGAGAAATAGCACTAGGACTTCAACGAAGCGGGGTTAGATTCTTGTGGGCTTTGCGTTCTCCAACAACAACTGA CAATGAAGAGAAAACTTTACCAGAAGGGTTCTTAGAATGGATGGAAGGTAGCAGGAGAGGGATGTTGTGTGAATGGGCAC CCCAGGTGGAGGTTCTGGCTCACAAAGCCATTGGTGGGTTTGTGTCTCATTGTGGTTGGAACTCCATCTTGGAAAGCTTG TGGTTTGGGGTACCAATATTGACATGGCCTATCTATGCAGAACAACAGCTGAATGCTTTTAGGATGGTGAGGGAATGGGG ATTAGCAGTTGAGCTGAGAATGGATTATAGAAAAGGTAGTGCTCTTGTGATTGCAGAGGAGATAGAGAAAGGGCTGAAAC ACTTGATGGACAGAGATAACATTGTGCACAAGAAGGTGCAAGAGGTAAAAGAGATGGCAAGGAAAGCTGTCCTAAATGGT GGTTCTTCTTTCTTATCTGTTAGGGAACTCGTTGATAATATGATAGGTAGTAAGTGATAACTATTCTCGTACTTCATAGA TGGAATTTTCTAATTTCTAAGAATCAATGAATAAATTCGACAAGAAATTGGACTGCTCTACTAAGAAATTGTTGTTTGAA TATATGTTTGAAATTGAAGTTTGTTTGTGACAGATTTAGTTAAGGGACATACAATGTCATACATTCTTTCATGTTCTGTT TTTCTTGCTTGATGTTTTGTTGGGATGGCAATACTTCCGTATCTAAAAAATATTGAAGTTTTAGTGATGTATTGGTCTCG ATGATAACTTTTTTGGGTAAAGAGTTATAACCACTTTGTGTCTTTTGCAAACATGCCATAAATTTTTATTTTGTCTCA

Download Genomic Sequence

CDS sequence (LotjaGi1g1v0121800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTCTGAATGAGAAGAAAACAGAACTGATCTTCATTCCCTCACCAGGAATTGGCCATTTAACCTCAACCCTTGAATT TGCACAGCTCCTGATCAAGAGTGACAACAATCTTTCCATCACAGTGCTCACTATCAAGCTCCCAACCATTCCCTTTTCAA ACTCATACATCAGATCAGTTTTGGCTTCACAGCCTCGGATCCAACTCATTGATCTCCTTGAAGTAGAACCACCCCCACAG AAGCAACCACTTGGACCTCCAGCATACTACATGTGGTCCTACATGGAAAGCCTCAAACCCCATGTCAAAGTCACTATGCA AAACATTTTATCAACTAATCCAAACCCAGTTGTGGGCTTGGTCCTAGATTTCTTCTGTGTTTCCATGATTGATGTGGGAA ATGAATTGGGTATTCCTTCTTATTTGTTCTTCACAACAAATGTTGGATTTTTGAGTTTCATGCTTTCTCTTCAGAAACGT CAGATTGAGGATGTGTTCAGTCATTCTGATCATGAATTGTTGATTCTGGGTTTCTCCAATCTAGTTCCTTCAAGTGTTTT ACCTGATGCTGCTTGCAACAAAGATGGTGGATATTTTGCCTATTACAAGCTTGCTGAGAGGTTCAGAGAAACCAAAGGGA TTATTGTGAATACTTTTTCTGAGTTGGAGCAGGATGCTATAGATGCATTATCTGATGGCCATACCCCTCCAATCTATGTT GTTGGTCCTTTGATTGATTTCAAGGGTCCTTCTAACCCAAATTTAAACCAAGCTCAGCACAACAGTTTGTTGAAATGGCT AGATGAGCAGCCACCTTGCTCTGTTGTTTTTCTCTGTTTTGGAAGCAGGGGAAGCTTTGATTCGTCTCAAACAAGAGAAA TAGCACTAGGACTTCAACGAAGCGGGGTTAGATTCTTGTGGGCTTTGCGTTCTCCAACAACAACTGACAATGAAGAGAAA ACTTTACCAGAAGGGTTCTTAGAATGGATGGAAGGTAGCAGGAGAGGGATGTTGTGTGAATGGGCACCCCAGGTGGAGGT TCTGGCTCACAAAGCCATTGGTGGGTTTGTGTCTCATTGTGGTTGGAACTCCATCTTGGAAAGCTTGTGGTTTGGGGTAC CAATATTGACATGGCCTATCTATGCAGAACAACAGCTGAATGCTTTTAGGATGGTGAGGGAATGGGGATTAGCAGTTGAG CTGAGAATGGATTATAGAAAAGGTAGTGCTCTTGTGATTGCAGAGGAGATAGAGAAAGGGCTGAAACACTTGATGGACAG AGATAACATTGTGCACAAGAAGGTGCAAGAGGTAAAAGAGATGGCAAGGAAAGCTGTCCTAAATGGTGGTTCTTCTTTCT TATCTGTTAGGGAACTCGTTGATAATATGATAGGTAGTAAGTGA

Download CDS Sequence

Protein sequence (LotjaGi1g1v0121800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MALNEKKTELIFIPSPGIGHLTSTLEFAQLLIKSDNNLSITVLTIKLPTIPFSNSYIRSVLASQPRIQLIDLLEVEPPPQ KQPLGPPAYYMWSYMESLKPHVKVTMQNILSTNPNPVVGLVLDFFCVSMIDVGNELGIPSYLFFTTNVGFLSFMLSLQKR QIEDVFSHSDHELLILGFSNLVPSSVLPDAACNKDGGYFAYYKLAERFRETKGIIVNTFSELEQDAIDALSDGHTPPIYV VGPLIDFKGPSNPNLNQAQHNSLLKWLDEQPPCSVVFLCFGSRGSFDSSQTREIALGLQRSGVRFLWALRSPTTTDNEEK TLPEGFLEWMEGSRRGMLCEWAPQVEVLAHKAIGGFVSHCGWNSILESLWFGVPILTWPIYAEQQLNAFRMVREWGLAVE LRMDYRKGSALVIAEEIEKGLKHLMDRDNIVHKKVQEVKEMARKAVLNGGSSFLSVRELVDNMIGSK

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
SUPERFAMILY	SSF53756 View details on SSF53756 Search for proteins/transripts with this domain View external data on SSF53756	9	462	454	5.1E-109	–
Gene3D	G3DSA:3.40.50.2000 View details on G3DSA:3.40.50.2000 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.2000	11	453	443	4.5E-162	–
CDD	cd03784 View details on cd03784 Search for proteins/transripts with this domain View external data on cd03784	11	452	442	8.51905E-73	–
PANTHER	PTHR11926 View details on PTHR11926 Search for proteins/transripts with this domain View external data on PTHR11926	143	396	254	1.2E-31	–
Gene3D	G3DSA:3.40.50.2000 View details on G3DSA:3.40.50.2000 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.2000	253	444	192	4.5E-162	–
Pfam	PF00201 View details on PF00201 Search for proteins/transripts with this domain View external data on PF00201	274	403	130	1.3E-20	IPR002213 Show description in modal box View details on IPR002213 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSitePatterns	PS00375 View details on PS00375 Search for proteins/transripts with this domain View external data on PS00375	341	384	44	-	IPR035595 Show description in modal box View details on IPR035595 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0016758 View details of GO:0016758 AmiGO InterPro QuickGO	Molecular function	Transferase activity, transferring hexosyl groups	Catalysis of the transfer of a hexosyl group from one compound (donor) to another (acceptor).	Subterm of View details of GO:0016757

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0121800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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