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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0123700 |
| Transcript ID | LotjaGi1g1v0123700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | UPF0503 protein, chloroplastic; TAIR: AT5G58930.1 hypothetical protein (DUF740); Swiss-Prot: sp|Q9SS80|U503A_ARATH UPF0503 protein At3g09070, chloroplastic; TrEMBL-Plants: tr|I1MB86|I1MB86_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0123700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:19610484..19612304) extracted from Lotus japonicus Gifu genome v1.2.
TACTGCTCTATGCTTACTTATGTCTGTGTCCGTTGTTGTTTCACTCCAACAACTTACTCACCCCCCCACCCACCCAACAC TCATGACTCCCACGCGCCACCGCTTCTCCACCTGTAACCGCCACCCCGCCGCTCCAGTCACCGGCTTCTGCGCCTCCTGC CTCCACGAACGCCTCGCCGGATTCCACTTCGACCACTCCCCTCCCTCACCAAACCTCCGCCGCACCCAATCCCGCTCCAC CCACCGTGACCCCCCTGAGCCCCGCCGCTACTCCTCCGAGGTCCGACCGCGTAGCTCGCTGTCCGATCTCTTCGGCATCA ACGACGACCGGAGTTGCCGGAATCGCAAGCCGGAGGCCGATTCGGCGAACTCGGTTACCGGAACCGGGGAAGCAACTCAG AACGGTGATTGCAGCGAAGGTGCGGTTAGGGTTTGCGATGAAGAAGACAACGATGAGGAAACGAAGACGATGAAGGAGTT CATAGATCTCGAGCTGAAGAGCAGAAACAACTCCGGGAGAGATTTCAGGAGTTTTCGCCATGCTTTCTCTGAGAAATTTC GGAAATGGAAATGGAAGCACAAGGTGAAGAAGAAAAACGGTGATGGTGATGGTGACGGCAACGGAAGCATCGAGGAGGTG AATACAGAGCAGCGATTGAGGGAGACTCAATCTGAGGTCGGAGAATGCAGATTAGGGAGAAGATCCTGTGATACGGATCC GGGGTTTTCGATGTCGATGGAGACGAGGAGAAGAATCTCAGTGGATTGGCCTCGAGTTTCATGTGATGGATGTTTGATTG GTAAACCATTTCCATGTTCATGTTCATGCTCAAGGCTTTCCTCCATAGATTCTGATGTGAATAATGACAATGGTGATTTG GTTGAAGAGAGTGGTAACAATGTGGGTTTTGATGAATTGAAACTGATGTCAAATGCAAAGGTTTCTCCTAGTCCTACCAC CACAGATTTGTTCTGTGAGGCCAAATTGGTTGTTGATGAAAATGATTTGAGCTTGAGGGAGAGGGATACCAATGTGAAAT CACCTGATTGTGTGATTGGATCTTCTTCAACCGAGGTTCGGCAAAAGGGTTTGAAGAAGTTTCACAAGTGGGGCATTGTG TGGAACAAGTTGGGGATTGAAGACAAGTTGAGGAGGGTGGTGAATGTTAGAACAAGTGAGTCTGTTAGCCAGAAGCTTGT TCGGAGCTATAGTGTTAGCTGTAGAAACACTTGTAGGATGGCTGGTTTGGTTAGCAACTTGGGGGCTCCTGAGACCAATG GAAATGTTTTGAATGGAAAGCAAGAGTTTACGCTTCACAGGAATCGGAGTGTTGGGTATTCGCCAAGTAATCTCGACACG GGCTTGTTAAGGTTCTATTTGACACCATTGAAGAGATATAGAAGAAGCAAATCTGGGAAGAGTAGCGTTAATGGTTAAAA TGTATATTAGGTTGGAAAAGCATATATAGATGTCATGTAATTGTTGTTGTCTATGAGGATGAATGAGTATATTACATTGT TAGATTATGGTTGCAATTTTTGTATTGATGTTGTTAGAGGAAATAAAGTATTTGTTCCATGATGCTGCTGGCATGGTTTG TGTCTGATTGCAACAACGCTGTAGGACTAGGAGTAACACCTGATTTTGCTAGAATTTGTTGCAAGGATATACTAATGATT TTGCATTTTTTTGATGAAATGTCTATGAACTGGTAATTTTCTGCCTCAAAGTTCTGCAATGACATTCCACTTCATACTGG GCAAATAACATGTTTTTTTCAAAGCATAATGTGGGTTCTGATTCTCTGCATAATTGAGGAA
CDS sequence (LotjaGi1g1v0123700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTGTGTCCGTTGTTGTTTCACTCCAACAACTTACTCACCCCCCCACCCACCCAACACTCATGACTCCCACGCGCCA CCGCTTCTCCACCTGTAACCGCCACCCCGCCGCTCCAGTCACCGGCTTCTGCGCCTCCTGCCTCCACGAACGCCTCGCCG GATTCCACTTCGACCACTCCCCTCCCTCACCAAACCTCCGCCGCACCCAATCCCGCTCCACCCACCGTGACCCCCCTGAG CCCCGCCGCTACTCCTCCGAGGTCCGACCGCGTAGCTCGCTGTCCGATCTCTTCGGCATCAACGACGACCGGAGTTGCCG GAATCGCAAGCCGGAGGCCGATTCGGCGAACTCGGTTACCGGAACCGGGGAAGCAACTCAGAACGGTGATTGCAGCGAAG GTGCGGTTAGGGTTTGCGATGAAGAAGACAACGATGAGGAAACGAAGACGATGAAGGAGTTCATAGATCTCGAGCTGAAG AGCAGAAACAACTCCGGGAGAGATTTCAGGAGTTTTCGCCATGCTTTCTCTGAGAAATTTCGGAAATGGAAATGGAAGCA CAAGGTGAAGAAGAAAAACGGTGATGGTGATGGTGACGGCAACGGAAGCATCGAGGAGGTGAATACAGAGCAGCGATTGA GGGAGACTCAATCTGAGGTCGGAGAATGCAGATTAGGGAGAAGATCCTGTGATACGGATCCGGGGTTTTCGATGTCGATG GAGACGAGGAGAAGAATCTCAGTGGATTGGCCTCGAGTTTCATGTGATGGATGTTTGATTGGTAAACCATTTCCATGTTC ATGTTCATGCTCAAGGCTTTCCTCCATAGATTCTGATGTGAATAATGACAATGGTGATTTGGTTGAAGAGAGTGGTAACA ATGTGGGTTTTGATGAATTGAAACTGATGTCAAATGCAAAGGTTTCTCCTAGTCCTACCACCACAGATTTGTTCTGTGAG GCCAAATTGGTTGTTGATGAAAATGATTTGAGCTTGAGGGAGAGGGATACCAATGTGAAATCACCTGATTGTGTGATTGG ATCTTCTTCAACCGAGGTTCGGCAAAAGGGTTTGAAGAAGTTTCACAAGTGGGGCATTGTGTGGAACAAGTTGGGGATTG AAGACAAGTTGAGGAGGGTGGTGAATGTTAGAACAAGTGAGTCTGTTAGCCAGAAGCTTGTTCGGAGCTATAGTGTTAGC TGTAGAAACACTTGTAGGATGGCTGGTTTGGTTAGCAACTTGGGGGCTCCTGAGACCAATGGAAATGTTTTGAATGGAAA GCAAGAGTTTACGCTTCACAGGAATCGGAGTGTTGGGTATTCGCCAAGTAATCTCGACACGGGCTTGTTAAGGTTCTATT TGACACCATTGAAGAGATATAGAAGAAGCAAATCTGGGAAGAGTAGCGTTAATGGTTAA
Protein sequence (LotjaGi1g1v0123700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSVSVVVSLQQLTHPPTHPTLMTPTRHRFSTCNRHPAAPVTGFCASCLHERLAGFHFDHSPPSPNLRRTQSRSTHRDPPE PRRYSSEVRPRSSLSDLFGINDDRSCRNRKPEADSANSVTGTGEATQNGDCSEGAVRVCDEEDNDEETKTMKEFIDLELK SRNNSGRDFRSFRHAFSEKFRKWKWKHKVKKKNGDGDGDGNGSIEEVNTEQRLRETQSEVGECRLGRRSCDTDPGFSMSM ETRRRISVDWPRVSCDGCLIGKPFPCSCSCSRLSSIDSDVNNDNGDLVEESGNNVGFDELKLMSNAKVSPSPTTTDLFCE AKLVVDENDLSLRERDTNVKSPDCVIGSSSTEVRQKGLKKFHKWGIVWNKLGIEDKLRRVVNVRTSESVSQKLVRSYSVS CRNTCRMAGLVSNLGAPETNGNVLNGKQEFTLHRNRSVGYSPSNLDTGLLRFYLTPLKRYRRSKSGKSSVNG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 23 | 55 | 33 | 8.4E-8 | ||
| PANTHER | 24 | 277 | 254 | 2.3E-101 | ||
| PANTHER | 24 | 277 | 254 | 2.3E-101 | – | |
| MobiDBLite | 55 | 147 | 93 | - | – | |
| MobiDBLite | 70 | 89 | 20 | - | – | |
| MobiDBLite | 112 | 129 | 18 | - | – | |
| Pfam | 137 | 293 | 157 | 1.6E-29 | ||
| MobiDBLite | 190 | 218 | 29 | - | – | |
| PANTHER | 294 | 375 | 82 | 2.3E-101 | ||
| PANTHER | 294 | 375 | 82 | 2.3E-101 | – | |
| Pfam | 297 | 461 | 165 | 5.3E-15 | ||
| PANTHER | 375 | 470 | 96 | 2.3E-101 | – | |
| PANTHER | 375 | 470 | 96 | 2.3E-101 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0123700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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