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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0124900 |
| Transcript ID | LotjaGi1g1v0124900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Formamidopyrimidine-DNA glycosylase; TAIR: AT2G04220.1 DUF868 family protein (DUF868); Swiss-Prot: sp|Q2NQU4|FPG_SODGM Formamidopyrimidine-DNA glycosylase; TrEMBL-Plants: tr|I1JHA0|I1JHA0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0124900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:19748121..19749047) extracted from Lotus japonicus Gifu genome v1.2.
TTAATGGCTTTCCAGAGATCCTTCAGATCACAATCAGTGCCAACACAAACATCATCATCTCTACCAGAGAAAACTTCTGA GGAGCCTTTACCTAGCAAAGTTGCACAAAGCACTGTTACATGTTTCTACCAAGCCAATGTTGCAGGTTTTTGGAGAAATG TCACAGTTTTATGGAACAAAAACCTCATGAACCACACCTTGAACATAACGGTTGATAGCGTATCAGGAGACTTGCATTTC AACTGCAAGGTTGACGTTAAGCCATGGCACTTTTGGAGCAAAAAAGGGTACAAAACCTTTGAGGTTGAAGGGAACCAGGT GGAGCTCTATTGGGATCTTCGTTCCGCAAAATTCTCCGGTGGCCCTGAGCCAAACAGTGACTACTATGTAGCCTTGGTTT CTGATGAAGAGGTTGTGTTGTTGTTGGGGGATTACAAGAAGAAAGCTTACAAGAGAACCAAATCTAGACCAGCCCTTGTT GATGCCATGTTACTGGTCAAGAAAGAAAACGTGTTCGCCAAGAAAAGCTTCTTCACAAAGGCCAGGTTTGATGAGAAGAG GAAAGAGAGTGAGATTGTGGTGGAGAGCTCAACTGGTGGTGCTAGTGACCCTGAGATGTGGATAAGCATTGATGGGATTG TATTGATTCATGTCAAGAACTTGCAGTGGAAGTTCAGGGGGAATCAAACGGTGATGGTTAATATGCAACCTGTTCAAGTG TTTTGGGATGTGCATGACTGGTTGTTTAGTGGGTCTGCTTCTGGGCCTGGGCTTTTCATTTTCAAGCCCGGGCCCCCTGA GGCAGAGAGTGAAAAGGAAGGTAGTGCCGTTGATGGTTGTGAAAGTGATGATGGAAGTTTCTATTCAACTCTGAATGTTG CTACCTTTGAGTTCTGCCTTGTTCTCTATGCCTATAAAACTGAGTGA
CDS sequence (LotjaGi1g1v0124900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTTCCAGAGATCCTTCAGATCACAATCAGTGCCAACACAAACATCATCATCTCTACCAGAGAAAACTTCTGAGGA GCCTTTACCTAGCAAAGTTGCACAAAGCACTGTTACATGTTTCTACCAAGCCAATGTTGCAGGTTTTTGGAGAAATGTCA CAGTTTTATGGAACAAAAACCTCATGAACCACACCTTGAACATAACGGTTGATAGCGTATCAGGAGACTTGCATTTCAAC TGCAAGGTTGACGTTAAGCCATGGCACTTTTGGAGCAAAAAAGGGTACAAAACCTTTGAGGTTGAAGGGAACCAGGTGGA GCTCTATTGGGATCTTCGTTCCGCAAAATTCTCCGGTGGCCCTGAGCCAAACAGTGACTACTATGTAGCCTTGGTTTCTG ATGAAGAGGTTGTGTTGTTGTTGGGGGATTACAAGAAGAAAGCTTACAAGAGAACCAAATCTAGACCAGCCCTTGTTGAT GCCATGTTACTGGTCAAGAAAGAAAACGTGTTCGCCAAGAAAAGCTTCTTCACAAAGGCCAGGTTTGATGAGAAGAGGAA AGAGAGTGAGATTGTGGTGGAGAGCTCAACTGGTGGTGCTAGTGACCCTGAGATGTGGATAAGCATTGATGGGATTGTAT TGATTCATGTCAAGAACTTGCAGTGGAAGTTCAGGGGGAATCAAACGGTGATGGTTAATATGCAACCTGTTCAAGTGTTT TGGGATGTGCATGACTGGTTGTTTAGTGGGTCTGCTTCTGGGCCTGGGCTTTTCATTTTCAAGCCCGGGCCCCCTGAGGC AGAGAGTGAAAAGGAAGGTAGTGCCGTTGATGGTTGTGAAAGTGATGATGGAAGTTTCTATTCAACTCTGAATGTTGCTA CCTTTGAGTTCTGCCTTGTTCTCTATGCCTATAAAACTGAGTGA
Protein sequence (LotjaGi1g1v0124900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAFQRSFRSQSVPTQTSSSLPEKTSEEPLPSKVAQSTVTCFYQANVAGFWRNVTVLWNKNLMNHTLNITVDSVSGDLHFN CKVDVKPWHFWSKKGYKTFEVEGNQVELYWDLRSAKFSGGPEPNSDYYVALVSDEEVVLLLGDYKKKAYKRTKSRPALVD AMLLVKKENVFAKKSFFTKARFDEKRKESEIVVESSTGGASDPEMWISIDGIVLIHVKNLQWKFRGNQTVMVNMQPVQVF WDVHDWLFSGSASGPGLFIFKPGPPEAESEKEGSAVDGCESDDGSFYSTLNVATFEFCLVLYAYKTE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 31 | 31 | - | – | |
| PANTHER | 11 | 307 | 297 | 4.6E-157 | – | |
| PANTHER | 11 | 307 | 297 | 4.6E-157 | ||
| Pfam | 34 | 305 | 272 | 2.3E-99 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0124900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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