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LotjaGi1g1v0125000.1

Overview

Field Value
Gene ID LotjaGi1g1v0125000
Transcript ID LotjaGi1g1v0125000.1
Lotus japonicus genome version Gifu v1.2
Description CONSTANS-like zinc finger protein; TAIR: AT5G48250.1 B-box type zinc finger protein with CCT domain-containing protein; Swiss-Prot: sp|Q9LUA9|COL10_ARATH Zinc finger protein CONSTANS-LIKE 10; TrEMBL-Plants: tr|A0A1J7HV28|A0A1J7HV28_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0125000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:19758780..19765133) extracted from Lotus japonicus Gifu genome v1.2.

ACTTTATCTCCTACGTGACATACATCAATTAAATGTTATATACATTAAAATGTAAAGTGTGAATGAATGAAAATCCAACA AACCACATTGCATTATTCTCCTCTCACACCTCCACCAACCCTCCCCAAATCTAATCTACAATCTAGCTATTCCTATCTAT CTGAACAGAGCAGAGGACAGAGAAACATAAAGAGGAAAAAAAGGTCAGTGTCTGTTTTCTGGAAAAGTCCAGCTTCCACC TCTAGGGTTCCTTTGCTTGAACTAAAGCAATATTTAAACATAAATTTTCTGAAAAAGGAACAGATCTTGTCCTCATTCAC TTTCTTGTCATGTGGTAATTTTCTTTCCTTCTGATCTCTCCCTCCTGTGTGTTCCATCTTTCATAAATAAAAAAACTTTT TTTTTCTTTTTAAAAACTTCAAATTTCATGTTTTTCTTAGCATGGAGTGTTTGCTGGGAGCTTAGTATGCTGGGAGTTGT TATTCAAGTTACCTTCTGTGTTTTCTTTTGTGGGTTCTGATTTGTGTGAAGGTTGCAATAGAATTCCTGTTAAGTTTTAT ATATTGATGAAGGTTAATTGACTTTTTTCTACTGCAATACTTTTATGATGGAAATGCAGTTTTTCAGATAAGATCATAAG GAAAGTCTACTTGCTTTACCTGAAAAAATGATAATTGAGTTGTGTATAATTATTCTTATCTTTCAAATCTAAGCTCATTT TCCATTGGAAGTTCTTCACATTGATATTATCACTTGATATTGTCTCAATTATAGTTTATAATCTATCAATTATCATTCTT ATTTACTCTTTAAAATGAATCATATGCTGTTGTACTTGTATGTACTATTGCTTCTGTCAATCGAGCTTGCTGTCAAGTGA TTTTCATTTTGTAGTTATTTTTCCTTTATTTACCCTTAATAGCACTTGAAGACATAAACATCATGCGTCTTCGTTTTGAA CCCTTTTTACTGAGCTGTCTCTTTAATCTTTACTGTTTTGTCTTGGTTGCATGTTTCCATACTGTTTGATCCAATTCCTT AAATTACTAGTTATGGTAACATGGCATCTATACATTGTTCACAGTTTGTGGCAGAATTTCCATTGCATTTTCCTTTCTTC TCATATAACTGAGTGTATATTCTTACTAAATGCTTACTCATTATTTCTCTTGGCAGCAGCTGAATTTGCAGACCTGAATT GTGCTTGCTTAGTACATTGTCTATCAACTTGTAAGTTCTACCTCAGATTCAGCTTCAAAATTTTAAGATAAGAAGGAACT GGTCTTGTAGTTTGGGAAGCTGATACTAATTGGAAATTTGTTTATTTAGATTAAGGAGCAGGCCGGAGTCGGTTAGAAGA TGGGTTATTTATGTGATTTTTGTGGAGAGCAGAGGTCCTCGGTGTACTGCCGCTCGGATGTTGCGTGTTTATGCCTGTCA TGCGATCGGAATGTTCATTCTGCTAACGCCCTTTCTAAGCGTCACGCGAGAACCCTTGTATGCGAGAGGTGTAATTCACA ACCTGCATATGTGAGGTGTGCTGATGAGAAAGTTTCGCTTTGTCAGAACTGTGATTGGTTGTCTCATGGTGCCGCTCCGT CTTCTTCAACACACAAGAGGCAATCAATCAATTGCTACTCTGGCTGCCCTTCAGCTGCAGAACTTTCTTCAATGTGGTCA TTTTTCTCGGATATTCCTTCTATTGGTGAAGCGTGTGAGAAGGAACTTGGTTTAATGAGCATAAATGAGAACACTGACAA GAGTGCTTGGGTTCCTCCAGAAAGCGAGAATGTGTCTGGTTCAGCTCAAGTGACTGATTTACCCAACAAGGACAAATCTT GGGTTGGTACATCTTCAGCACCCGAGTCAAGCTCAGAACCTCGTGTTCTGGAACAAGCACCTGGACCTGCCAATGAATGT ATGCCCAAGGTATAGCTTCATTTTTTCATTTTTATCCCAAGTCTTATAAGTTATAACTGACCAAGTTTGGTGGACATTCT CTAACTACTGTACAGTGAATTAAATTGCAAGGTTGCCAAGAGTGAATTCATTTTCATAAATCTATAGGATGGTCTCTTTT TCTTTTTTCTCTGTAGAAATCACGGGGTAATAGCAAAACTATTTAGAAATTATAGTGTGTTTGGGTACCAGTTGAGTGTA ACGTGAACAAACTTTCATCTCAATACATAACAAGAATTCCATTAATTTTTTTGTCTTGAAGTGCCTGCTAACGTATGTGT GCGCTGGTGTCAATGGATAACTCAACATAGTCATAATCATGCTAAGTGTGATGGGCATTCTAACAACAGAACAATGAACG AAATTGTGAGCTTGCAAGGAATTACAATAGATGGCATAATGATATGCTTGAAAAAAGACAATAGCCTTGTACCTTACGTG TATTGTTTTCTGAAATGAGTTTAACAATTTTTAGCTTTCTTAACCTCTCATGATGAATCTGCAGTTACACTGTCCCGCCA AAAAAACTTCTGAACTATGTGAAGATGATACTGTGTGTGATGATTTCAACATAGATGAAATGGATCTTTTTTTAAAAGAT GAAATGGATCTTTTTTCAAAAGATGAAATGGATCTTGAACTTGAGAACTATGAGGAACTTTTTGGTATGGCTCTCTGTCA TTCTGAAGAGCTTTTTGAAAATGGTGGAATTGGTAGCTTATTTGAGGCAAAGGACATATCTGCTAGTGCTGGTGATTCCA ATTGTCAGGGTGCTCTCACTGCTGAGGTACTCAAATTTCTTCATCCTTTGTTTGTGATAAGTTTGGTTTTTCTCTTTCCG AAGCACTGTGTGTGTTATATTCCTTTTAACTAAGCCATGCATCTTGTTATTCATAGTTTATCAATGGGAAATTTAATGTG ATTAAGTTCTACACCATACACCAATCATCTACCTGTTGATCTGTGTACACGATTTCTTGTTATCCCTCATCTGGTGATAG TGCATATCTTAACTTGTATGATAAAATAAGTAATTAGATAAATCAGTCTCAACAGGGTTTTTCCACCACTGAAATTTGTT TAAATTGCTGTATCAACTATCAAATGCTTTCATATCTGAGGAAGCACTACCATTTGTCTCATTTATTATTAATGAATGTA TTATCTGAATGGTTTGAAGTGGAAGAAAGATGACCCGAAGGTATGGTCAGCTTAGTGCCAACTTTTCATTATCAGCAAAA ATTGGTATAATCATATTATAAATTATATATTTCATCAAGTAGTATGGCCAAACTGCTGATGCTTTGTGTTGATTGAACGT ACATGAATGTTGCAGCCAAAATAAAAAAATATCAAGTATTTTATTGTTGGGTAGAATAAATCACTATTTCAATTCCTTGA ACCTGATATTTATTTGATTTGGTTGTATTTATTCATCCACTCATGTTGCAGGTGCTTGTACTTGAGTAATAGGATTCTTA CCATCCAGTATTTACACGTTTGTAATGTGAAAGTCGTATTAGATAATGAACACAATTTCTTTTGTAGGATCTGAGTTAAA TGGTTCTGCATTTCTGTCGTTTCATACTTTGAGTTATGATCAGATCTAAACTTATTTTTCTAGGGGTCATCAGTTGCGTT GGGAAATGCCATGAAACCAGCATGCAGCACTGCGGCATCTGCAGATTCAATGTTAAGTACTAAAACAGAACCAATTATTA GTTTTGCGGCAAGGCAATCCCAATCAAACATTTCTTTTTCTGGCGCTGCCAAGGATAGCAGTACTGCTGACTATCAAGAT TGTGGTGCTTCTTCAATGCTTCCCATGGGAGAACCTCCCTGGTGTCCTCCTTTCCCTGAGAGTTCTCTGCATTCTGCTAA TCGCAGCAATGCTGTCATGCGTTATAAGGAAAAGAAAAAGAACAGGAAGTAAGTTGATTGTGATTATACTATTTACATAG CCAATGCCGTTCATCCAAAATCACGGTGACCTGACAATCATCCAGTGTTGACTTTGTGCTGTTCTGAGCATGTGATTATT AATTTCACTAATTGTTTCTTTATTCATTTTACCTTATTGTTCTACAACAAGAATAGTAGGAAAGCCTTATCCTAATAGGT GGAGTTAGCCATATGGGTTAATTAATACCATTATGCTTGATAAAAACTGTGTAGGGAAAACTTTAGAGCTAGGACATCTT GAATAGTTTCTCCTGATTTTTTTGATTTTCTTCTACCCTTGTTCCTATGATCTTCTCTTTAAGTGTCTAATAGATTTTGT TCTCATATGGCCAAACCATCTTAGCTGAGATTTTGTAATCTTGTCTGCAGTAGATGCTACAACTTTCTCTGAGATGCATT TGTCCTAAATATTTTATTGTATTTCCACCCAACCACTTCAACATTCTCGCTCTGATGCACTTATTCTTTCACATTATTTT TAAATTTCATTTTGTTTCTTTTATTGCCTCTTCATGCCTAACATTCATTCATCAATCATCACCATAGATAGAACGTTGTT GATGTTATTATCTTTGTAAGCCATATTAGACCTTTCTCCTCTAGACACTTGGGGTTTTCAGTACACTGAATTAATAAGGT GGTAGTGATGAATAATAGTTTAAAAAAATATCAAAAAATAATAAAACTAGTTATGCAGTATGCTAATGGTTATATTTGTG TCTATCATTCTGTGGTTTTCGTGTTTGATACATATTAAAGATATCGGCCAGTTTTATGTTGGCAGCCGAAGGCCTAAGAC AACTATCCTCCTTTACCCGGGCTTAGGACCGGCTATGCATGCATAGACGGAGTTATTCTGTGGTATTATATTAATAAATA TAATGCATTCATGATCTGCTATAGTTTGTGCTATACATAATGTGATCAGCCAATTAGGGATATCCTATTGCACATATGAC ATGTCTTTAGCTTTGGTTGCTTTCTTTGCTGCTAAGCAATATAACTAATGGTTAACTGTTGGATATAATTTATTTCTAAA GTTCTAAACTTACTTGCTTTATAGGTGAATTAACATCTGTTCTGGTTATTATTTCAGGTTTGATAAGAGAGTAAGATATG CCACTCGCAAGGCAAGGGCTGATGTTAGAAAACGTGTGAAGGGTCGGTTTGTCAAAGCCGGAGATGTCTATGATTATGAC CCTTTGAGCGAAACCAGAAGCTACTGAGGGCACTCCTTTTAACCATGTTCTGTAAAAGGAAAAGGGACTCATATGGTTGC AAAAGTAAAACAGTTTTCCTTATCTGAAAATGGATGAAATCTGGTTCATTCTTTCTCAGTGTGACAAGCTGTCTGATTTT ACCACAGGAGCGTCAAGGGAAAGACACAGTACAGGCTCAGAGCGGATTGTGTCCTTTGCCGGAAAGGATACCCTGGTTAT GATATCAGCTGACATTGAAAATATCAGACAAAGTGCCCCCTCAGGCAATGTGTCTTGAATTTTTTTTTGCCTTTAACTAG GCAAGTTCTGCTTGATTCTAATCGAGTGCACAATTCTTTTGTAGTCCTTTGGCCATGATCTTGTCATGGTTTTGTCATTT GCTCTCATATCTCTTCTAATCTAAGTCACATGTAGAAGTTCCCTTGATGGCATGATAAGTGGCTCATTTTGATTTTTCTG GATAAGCTAGAATGTTGTAGGCTGTAACATTTTCCCCCTCTTGCTTTGCCATGTATAGCACAGAATATGCACATATGCAG ATAGGGGTGTAATTGTATGACATTTTGTGATTTAAGGGCTATGTATAGAATAGGATGTTGTTTATCCTGATCACAGGAAA TGGTCTATATTGGACATGTATCATGTATCGATAAAAGTTTTGTTTGTATTTTACTTGGCCTATTTACTTCCATCTTAAGC AATTTCATAGAAAATAATGTTATATAACCTCGTGGGATCGGTAATGTTATCTCCACACCTTGAATAGTGATTTCTCTCCA TTTCCACCTTTGCCACATCACACGTTGCCATTCAGCTTGCCACCGTGGCAGAGAGAGAAGAAAGCTAAAAAATGAGAAAG TGAGGGAAAATTGGGTGGGAAAACAAAATTGGAAAAAATTAGGGTTCTCTCCCCCAAAATTAAATCACCACTTATTTCCT CAACTCACCACCTCCATTTCCCCTTTCTCCTGTAAGCTGCCGCACCACCACCTCCATTTTCCCTTTCTCCTTCCAAATCC ACCACCTCCATTTCCCCTCCCTTTCTTCCAGCGGCCCTTCTCCACTCCGAGCAACACGCACGTCTGCAACAGCGCCGCCG CCACGCTCCTATCGAGGTTCCAACACCCTTTGTGCAGAGGTAAGGTTACAACTTCTATAATTAGTTTGTTTTTTGCTCTG GTTTTGCATTTGTCCTGTGAAGAATTGATACTCA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0125000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGTTATTTATGTGATTTTTGTGGAGAGCAGAGGTCCTCGGTGTACTGCCGCTCGGATGTTGCGTGTTTATGCCTGTC ATGCGATCGGAATGTTCATTCTGCTAACGCCCTTTCTAAGCGTCACGCGAGAACCCTTGTATGCGAGAGGTGTAATTCAC AACCTGCATATGTGAGGTGTGCTGATGAGAAAGTTTCGCTTTGTCAGAACTGTGATTGGTTGTCTCATGGTGCCGCTCCG TCTTCTTCAACACACAAGAGGCAATCAATCAATTGCTACTCTGGCTGCCCTTCAGCTGCAGAACTTTCTTCAATGTGGTC ATTTTTCTCGGATATTCCTTCTATTGGTGAAGCGTGTGAGAAGGAACTTGGTTTAATGAGCATAAATGAGAACACTGACA AGAGTGCTTGGGTTCCTCCAGAAAGCGAGAATGTGTCTGGTTCAGCTCAAGTGACTGATTTACCCAACAAGGACAAATCT TGGGTTGGTACATCTTCAGCACCCGAGTCAAGCTCAGAACCTCGTGTTCTGGAACAAGCACCTGGACCTGCCAATGAATG TATGCCCAAGTTACACTGTCCCGCCAAAAAAACTTCTGAACTATGTGAAGATGATACTGTGTGTGATGATTTCAACATAG ATGAAATGGATCTTTTTTTAAAAGATGAAATGGATCTTTTTTCAAAAGATGAAATGGATCTTGAACTTGAGAACTATGAG GAACTTTTTGGTATGGCTCTCTGTCATTCTGAAGAGCTTTTTGAAAATGGTGGAATTGGTAGCTTATTTGAGGCAAAGGA CATATCTGCTAGTGCTGGTGATTCCAATTGTCAGGGTGCTCTCACTGCTGAGGGGTCATCAGTTGCGTTGGGAAATGCCA TGAAACCAGCATGCAGCACTGCGGCATCTGCAGATTCAATGTTAAGTACTAAAACAGAACCAATTATTAGTTTTGCGGCA AGGCAATCCCAATCAAACATTTCTTTTTCTGGCGCTGCCAAGGATAGCAGTACTGCTGACTATCAAGATTGTGGTGCTTC TTCAATGCTTCCCATGGGAGAACCTCCCTGGTGTCCTCCTTTCCCTGAGAGTTCTCTGCATTCTGCTAATCGCAGCAATG CTGTCATGCGTTATAAGGAAAAGAAAAAGAACAGGAAGTTTGATAAGAGAGTAAGATATGCCACTCGCAAGGCAAGGGCT GATGTTAGAAAACGTGTGAAGGGTCGGTTTGTCAAAGCCGGAGATGTCTATGATTATGACCCTTTGAGCGAAACCAGAAG CTACTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0125000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGYLCDFCGEQRSSVYCRSDVACLCLSCDRNVHSANALSKRHARTLVCERCNSQPAYVRCADEKVSLCQNCDWLSHGAAP SSSTHKRQSINCYSGCPSAAELSSMWSFFSDIPSIGEACEKELGLMSINENTDKSAWVPPESENVSGSAQVTDLPNKDKS WVGTSSAPESSSEPRVLEQAPGPANECMPKLHCPAKKTSELCEDDTVCDDFNIDEMDLFLKDEMDLFSKDEMDLELENYE ELFGMALCHSEELFENGGIGSLFEAKDISASAGDSNCQGALTAEGSSVALGNAMKPACSTAASADSMLSTKTEPIISFAA RQSQSNISFSGAAKDSSTADYQDCGASSMLPMGEPPWCPPFPESSLHSANRSNAVMRYKEKKKNRKFDKRVRYATRKARA DVRKRVKGRFVKAGDVYDYDPLSETRSY
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
ProSiteProfiles
PS50119
1 47 47 9.3
IPR000315
PANTHER
PTHR31717:SF62
1 228 228 2.7E-147 –
PANTHER
PTHR31717
1 228 228 2.7E-147 –
SMART
SM00336
4 47 44 4.2E-7
IPR000315
CDD
cd00021
4 47 44 5.73505E-8
IPR000315
ProSiteProfiles
PS50119
43 90 48 9.158
IPR000315
Pfam
PF00643
46 90 45 4.1E-5
IPR000315
CDD
cd00021
47 90 44 2.17145E-4
IPR000315
SMART
SM00336
48 90 43 0.15
IPR000315
MobiDBLite
mobidb-lite
134 173 40 - –
MobiDBLite
mobidb-lite
134 183 50 - –
PANTHER
PTHR31717
227 428 202 2.7E-147 –
PANTHER
PTHR31717:SF62
227 428 202 2.7E-147 –
ProSiteProfiles
PS51017
371 413 43 15.398
IPR010402
Pfam
PF06203
371 413 43 3.6E-16
IPR010402

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0125000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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