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LotjaGi1g1v0128100.1

Overview

Field	Value
Gene ID	LotjaGi1g1v0128100
Transcript ID	LotjaGi1g1v0128100.1
Lotus japonicus genome version	Gifu v1.2
Description	Response to low sulfur 1 protein; TAIR: AT5G24660.1 response to low sulfur 2; Swiss-Prot: sp\|Q9FIR9\|LSU2_ARATH Protein RESPONSE TO LOW SULFUR 2; TrEMBL-Plants: tr\|A0A151SG23\|A0A151SG23_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0128100
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr1:20463213..20464578) extracted from Lotus japonicus Gifu genome v1.2.

GATTCTAACTCTCTTGTGTATATATAAACCTGTTCTTCCTTCACTTGTTTCATCAAAAACTTACTCAATCACTTCTCTTC CTACAAAATCACGCTTCCGCAGCCGTTGTTACTTGTTACTTCCACAATGCTGGCGGTGTTCGGAATGCGCGACAACGGCG AGAGAATGAAGAGGAGGCCGGAGGGCGGCGACACGACGTCGTTGCAGCTGAAGAAGAGGAACCAGGAGCTGGAAGATGAG CTGAGGGAGAGCAATGAGAGGGAGGAGAAGATGAGGAGCCAGCTGCAGGGGGCGCGTGAGAGGCTTCGAGTGGCGGAGGA CGCGGAGGAGCGGCTCTGCTGCCAGCTAGGGGAGCTGGAAGCAGAGGTGGTTCTCCATGCGCGTGAGTACCATGCTCGTG TTGTCTCCCTCATGGATGAGCTCTCCCGAGCACACAGTCTCCTCAACTCAGTTTCACTTCCTTAGTCATCATGAATGAAT CGATCATCATTTACTTTTTATTTCTTCTTCTTATTTTCTCCCTTGGTTTTTTTTAGAAGCATGAAATTTCTGTGTGTTTT GCATTTGTACATGCCTAGTGTTTTAATTAGGTGTACAATGCAATGATTTGAAGGTTAATGTTAGGTTCAAGTTCAAAGTT AATCCTTAATTAGAGTGAGAAGAGAGAAATGTGAGGTAGGATGATCAAGAAGAGATTGATAAGAAAAAAGTAGATAAAAG AATAAGTGAGTGTGAATGCATGAGAGTTGCTCTTGTAACATCTTATTTCTATTTTTTTTATCTCTCTATAATTTCTATCA CATAATTTTTCATATCCCCATTTATCTAGTTTATTTTCGTATATTATCAAGTGTGAGTATTTTTTAAGACGTGAACATAA TTATTTCCTTAAAATAAATGGGTGAAATGACAAACATATCCCGTGTTTTAAGTTAAATATGAATTTTAATTAAACAACTC ATCATCATTGTGTGTAAACAAGCTACTTTGAAACATAAATTCGAATTCTGAGAAAATAATTTGTTACGAGAGATTACTAC ATTTTATGAGTGAGAATATTCGTAAAATAAAATAAAATGATGTTACTTAACTATTCAATAATGATATATACACACCTCAT TTTTTAAACACTTCATTTCCACCCCCTTTTATATCTATCTCTCTCCTTTTATCATCTATCACATCTCATACTTTCTCTCT TTTACTTTTTCTTTTCTTCCTATCTCTCTCCCCATTCCACCTCTCTCTACCTCAAAGAGAGGTGTGAAAGAAACATTATC CCTTAACTATTAGACCATTTGCAATGGTTGTTGAAAATTAATGTTGAAGATTGTTGAGAGGTTGTAATGGTGGTTGAAGA TTGTTG

Download Genomic Sequence

CDS sequence (LotjaGi1g1v0128100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCTGGCGGTGTTCGGAATGCGCGACAACGGCGAGAGAATGAAGAGGAGGCCGGAGGGCGGCGACACGACGTCGTTGCA GCTGAAGAAGAGGAACCAGGAGCTGGAAGATGAGCTGAGGGAGAGCAATGAGAGGGAGGAGAAGATGAGGAGCCAGCTGC AGGGGGCGCGTGAGAGGCTTCGAGTGGCGGAGGACGCGGAGGAGCGGCTCTGCTGCCAGCTAGGGGAGCTGGAAGCAGAG GTGGTTCTCCATGCGCGTGAGTACCATGCTCGTGTTGTCTCCCTCATGGATGAGCTCTCCCGAGCACACAGTCTCCTCAA CTCAGTTTCACTTCCTTAG

Download CDS Sequence

Protein sequence (LotjaGi1g1v0128100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLAVFGMRDNGERMKRRPEGGDTTSLQLKKRNQELEDELRESNEREEKMRSQLQGARERLRVAEDAEERLCCQLGELEAE VVLHAREYHARVVSLMDELSRAHSLLNSVSLP

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	52	52	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	9	52	44	-	–
PANTHER	PTHR34283:SF1 View details on PTHR34283:SF1 Search for proteins/transripts with this domain View external data on PTHR34283:SF1	21	111	91	9.2E-39	–
PANTHER	PTHR34283 View details on PTHR34283 Search for proteins/transripts with this domain View external data on PTHR34283	21	111	91	9.2E-39	IPR039282 Show description in modal box View details on IPR039282 Search for proteins/transripts with this domain View on EBI InterPro Service
Coils	Coil View details on Coil Search for proteins/transripts with this domain	25	80	56	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0098869 View details of GO:0098869 AmiGO InterPro QuickGO	Biological process	Cellular oxidant detoxification	Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide.	Subterm of View details of GO:1990748

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0128100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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