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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0128700 |
| Transcript ID | LotjaGi1g1v0128700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Calcium-dependent lipid-binding (CaLB domain) family protein, putative; TAIR: AT2G40815.2 Calcium-dependent lipid-binding (CaLB domain) family protein; Swiss-Prot: sp|A7MMD8|RNB_CROS8 Exoribonuclease 2; TrEMBL-Plants: tr|G7K645|G7K645_MEDTR C2 domain protein; Found in the gene: LotjaGi1g1v0128700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:20523404..20526130) extracted from Lotus japonicus Gifu genome v1.2.
CGATTTCACTAATCCCAACATGTGTGCTGGAAAATGTTAAACAGAATCCTGCTTGGCTGTGATGCACTTAACAGGAAGAA AAAGTTAGCTAGCAAAAACCAAGTAAAGTAGCCAATGAAAAATGCAAAACCAGTTCACTTTACTTCTTTTCCTGCACAAC CCTTGTTGTTCCTCTAAAACCCTCTCCTCTCTTCTTCTCTGCACCCTCCATGGCCAAAATCTGGGTTGAAATATGCTTGA TATCAGCTCGTGGGGTGAAGGGTCCACCCTCACTATGGAAACGTCAATGGTATGCTGTTGGGTGGGTTGATCCTAGCACC AAATACTGCACCAAATTTGATGCTTCTGGGAATGCAAACCCTGTTTGGAGAACCAAGTTTGCTGTTCAGGTTGATAGTGA AGTGCCTAACTTCAAAGATCTTTCACTGAATGTGGAAGTTTACAGTAGAGATCCTGTGTTCTTCACAGAGAAGCTTCATG GCTCAGCAACTGTTCTTCTCAAAGAGTTTCTTGCCAAACAGCTACAAAGCTCTGGGATTCCGAGGAATGAGGAAGTTGGG AGTTACCAGTTGAGGAAGAAGAAATCTAACAAGCCAAGTGGGTTTGTTGATGTTTCAATTCGTGTGTTTGAGGACAAGGA AGAGGTAGATTCACACCCAGGTATGTTGTTTTTTGACAACCTTCAAATGAAATAAAAATAGTTACTTTTGATCCACTATA GTTCTTTTTTTTGTTTTTGTTGTCTTACCTAGCTCTGAATTCAATATACTTAAATTGGGTTTCATGCTTTAGTGGAAAAG TTGACAACTTTGATTGATGTTGAAGTTAATGTCTGGTTTCACCATTCTCACATAAGTCAAGGCATGTTTGCTTTAGCTTC TAACTAGAACTGATTATAGAGCATGTCACTCTGGAACCAAACATGCTATTGTGTCTGTTATTGGTTAAAAGTTAAAACCA AAGTAAGAGTGTATTGTTTTCTGATATCATGTTTGGATTAGCCTCTCATTCAGCCGAATCAAATCTGAACTCTAGAAGCT ACTGATGTAAGCTTCTCCTGGTAATTGAGAGAAAGACTGAAAGGGTTCCTTTTACCTTTGTGTATTAGAATCAATCTCTC TTGTCTTAGCCATCTCTTAATTCAATGTACTCTAATTTGGTTTCATGCTTTAGTGGAAATGTTTAAAACTTCGATTGAAG TTTAAGTACATGTTTGAAAATCTTCCTACAATTGATTCTCAAGTCAAAATTAATTATGTTAAGAAGCCTTTGTGACTCAT CTTCAGGGTGCTAAAATCACATGCTACAAGGTTCATGTTTGGTTTCACGATTTTCTCATAATTCAAGGCAAGTTTGCTCA TGAGCTAAGACTTGTAGACTAAACATGCTATAAGTGTGTCTGGTATAAATTAAAATTACAGTAAGAGTATATTTTTCTTA ATCCACAGAGAGTTCCTTTTACTTTTGTAAGTGAAAATGTAGTTTTTGAGATCAACCTGAACCAACTGATATCTAGACAT GCACTAAATCTTCAACTTCAAAAGAATATTGAAGTGATTTGAGCTCTATGTTTTGTTATGCAGGTGAGGGGGGAGGAATA TTGCTGTCAGATCATGGCAATAAGGGTAGATTTGGGCAAGCCTATCCACACCAAATGGCTCCAGCTTCATTCCATGGACC AGAAAAACAAGCACAAATCAATACCCCTTACTCACATCCAGTTCCATTTCCTGCAAACTACTCTAACCCATATGTGGGTG GACCAAGCTACCCTGCAGCTGCTGGACCGAGTTATCAACCACCCAGAACTCATCCACCACCGCCGCCGCCACCACCCTCA AACACTGGTTATATTCCCAGTTTTCATCCTAGTAATGATGGATTGGGACCTAGTTATTTTAATATGGCATCATCATCATC TGGTGCAGCCCCTAGGCAGAGGGGACCTCCAGGGTTTGCAATGGGTGCAGGTGCTGGATTAGCAGCTGGTGCTGTAATGT TTGGTGATAACATCATGTCATTATTTGATTTTCCTTCAGGCCTAGCAGATCCCATTATTAACATTGCAACTGATCCTCTC TTCTAAATAAGTATTGACTATTGAGCAGCTTCTGTAAATATATTGGGCTCCACAGCCTACATGTGAACCAGATATTTCCA TGCCATAAGATTTTGGGGTTAACTGTGATAAAGAAAATGGTGGTATGTGTTTTCTTTTGTCTGAATCTGGAAGGTCAAAT TGATTCTTTTACTTTGTAACAAGTTACATACTTTGGCTCCATGCTAATGTCTTTGGTACAGAAGGAAAAGGTTTCTTAAT TGGAATTGGGAAATGAATCAAATACTTGTTACTATGGTAAGTCTTGTCATGTTTTATCCAAGTTAAATGCTAGGTCTAGT TTCCCGGGTCGAACAAGATTGCTTTAAGAGGAGGATACCTTTGGTGTACCAAAATCATGCTAGGTCCAATTTGTAAAGTT TATCTGCAAAATACTCTGGCTCTGGCAGGCAAGCATGAATAGTTGTACATGAACATGAAAATATTGTTCTTTCCTTTCAA GTATTTTTCCACTTTCAAGTTCTCAGTTCACTCTAGTCATGACAAAGAGACCTGTTGGGAGCAATAATAGAAAAGAGAGA AGAGAGAAAGAAATATCACACAGGAGTTTTTAACGTGGTTCAGAACACAGTGTGTGTACCTACGTCCACGGCTACACTAG GTAGTAA
CDS sequence (LotjaGi1g1v0128700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCAAAATCTGGGTTGAAATATGCTTGATATCAGCTCGTGGGGTGAAGGGTCCACCCTCACTATGGAAACGTCAATG GTATGCTGTTGGGTGGGTTGATCCTAGCACCAAATACTGCACCAAATTTGATGCTTCTGGGAATGCAAACCCTGTTTGGA GAACCAAGTTTGCTGTTCAGGTTGATAGTGAAGTGCCTAACTTCAAAGATCTTTCACTGAATGTGGAAGTTTACAGTAGA GATCCTGTGTTCTTCACAGAGAAGCTTCATGGCTCAGCAACTGTTCTTCTCAAAGAGTTTCTTGCCAAACAGCTACAAAG CTCTGGGATTCCGAGGAATGAGGAAGTTGGGAGTTACCAGTTGAGGAAGAAGAAATCTAACAAGCCAAGTGGGTTTGTTG ATGTTTCAATTCGTGTGTTTGAGGACAAGGAAGAGGTAGATTCACACCCAGGTGAGGGGGGAGGAATATTGCTGTCAGAT CATGGCAATAAGGGTAGATTTGGGCAAGCCTATCCACACCAAATGGCTCCAGCTTCATTCCATGGACCAGAAAAACAAGC ACAAATCAATACCCCTTACTCACATCCAGTTCCATTTCCTGCAAACTACTCTAACCCATATGTGGGTGGACCAAGCTACC CTGCAGCTGCTGGACCGAGTTATCAACCACCCAGAACTCATCCACCACCGCCGCCGCCACCACCCTCAAACACTGGTTAT ATTCCCAGTTTTCATCCTAGTAATGATGGATTGGGACCTAGTTATTTTAATATGGCATCATCATCATCTGGTGCAGCCCC TAGGCAGAGGGGACCTCCAGGGTTTGCAATGGGTGCAGGTGCTGGATTAGCAGCTGGTGCTGTAATGTTTGGTGATAACA TCATGTCATTATTTGATTTTCCTTCAGGCCTAGCAGATCCCATTATTAACATTGCAACTGATCCTCTCTTCTAA
Protein sequence (LotjaGi1g1v0128700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKIWVEICLISARGVKGPPSLWKRQWYAVGWVDPSTKYCTKFDASGNANPVWRTKFAVQVDSEVPNFKDLSLNVEVYSR DPVFFTEKLHGSATVLLKEFLAKQLQSSGIPRNEEVGSYQLRKKKSNKPSGFVDVSIRVFEDKEEVDSHPGEGGGILLSD HGNKGRFGQAYPHQMAPASFHGPEKQAQINTPYSHPVPFPANYSNPYVGGPSYPAAAGPSYQPPRTHPPPPPPPPSNTGY IPSFHPSNDGLGPSYFNMASSSSGAAPRQRGPPGFAMGAGAGLAAGAVMFGDNIMSLFDFPSGLADPIINIATDPLF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 317 | 317 | 7.0E-132 | – | |
| PANTHER | 1 | 317 | 317 | 7.0E-132 | – | |
| SUPERFAMILY | 4 | 142 | 139 | 5.92E-12 | – | |
| Gene3D | 5 | 152 | 148 | 1.8E-9 | ||
| SMART | 5 | 109 | 105 | 0.0099 | ||
| CDD | 6 | 135 | 130 | 3.13081E-31 | – | |
| Pfam | 8 | 104 | 97 | 1.4E-5 | ||
| MobiDBLite | 144 | 196 | 53 | - | – | |
| MobiDBLite | 214 | 244 | 31 | - | – | |
| MobiDBLite | 217 | 240 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0128700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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