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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0130600 |
| Transcript ID | LotjaGi1g1v0130600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polynucleotidyl transferase, ribonuclease H-like superfamily protein; TAIR: AT4G29090.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|A0A151RCT4|A0A151RCT4_CAJCA Putative ribonuclease H protein family; Found in the gene: LotjaGi1g1v0130600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:20970599..20972363) extracted from Lotus japonicus Gifu genome v1.2.
GGGGGGGGCTAGGGCTAAAGCATCTTCACGAGTTCAACCAGGCCCTGTTCATGAAGCTCAATTGGGGCTTGATTTCAACT CCAGATGCACTGTGGGTCCGTGTCTTGCGTCATAAATATGGGTGTGGGGACGATGAAGTACCTATGGTTGCTCGCAGAAG CTCGGAATCCTCAATCTGGAATAGGATTCGCAGTACTTGGTCAGCGTTCAGTCGTGGTATTTGTTGGCAGCTTGGGAATG GGAGGAGTGTGCATTTTTGGACTGACAGGTGGCTTGTATCAAGGATTTCTCTTGAAGAGGCTGCTCTCCATTTAGCCCCA CCTCATCTGGTAAACTGTTTGATGTCTGATTTCTACCATAGTGATCGTGTGCGCGGGTTGGCACAAATAAGAGAGCTTGT ACCTGATGTGGTTTTTCAGGAGGTTCTCTTGTCTCTTCCTGCTACCCTTTCTAACGAGCCCGATGTTCCTGTGTGGGGTG GTACGAGTACTGGAGTATTCTCCACGCGCTCTGCCTATGAGCTTCTGACAGAGGACTGGTACGACACTACAGCTGATCCC GTTTGGAGGCTACTTTGGAATTGGAAGGGAGCACCTCGCCTTCGGCTACTGGTTTGGAAGGTTCTCAATGGCGGATTGAT GGTCAATGCGAAGAGGGTTTTGAATCATCTGGATGTGAGTTCGTGCTGGCATGCTTTTCTTCCTGGTACAGTGGGCACTC CTTTTTTTACTTTGAACTTGCGTGATTGGGTACATTGGAATTTGAGCGGTGGTCCAACGAGAAGCGATTCTGAGGATTGG GTCCGGCGCTTTGTGATATGCCTCGCGAGTGTTTGGCGCATGCGTAACGAGGTGGTGTTCAATCAAACCCCTTGGGAGCT TGGACAGGTGCTGGCGTGGGGTACGTCTAGCCTCCATGATGATTCTGTAGCAGCAGCATTCGATGATTCTACAGGCCCTC GGAGTGAGACAAGCACTGGCTGGTTGTTTCCCTCGGTGGGGTGGTTAAAGTATAATGTCGATGGCTCGGTCTGGGGCACC GGGGAGGCTGCTTGTGGGGGTGTTCTTAGGGATAGCTCCGGGCACTTGGTCCATGGTTTCTGTCGTTGGTTGGGTACTTC GAATCCATTCATGGCTGAACTTTGGGCAATCCGTACGGCAGTTGAGGTTGCTCCATGGCCTACGTGCCCTCGGATGGTGA TCGAAAGTGATTCTTCTGAAGCCATTGCTGCATTGACTACCACAGGAACTTTAGTGCACTCTTTCTTGGGGATGGTGTCT GCTATACGTCGTGCGATTCCTCAGGGTGTTGAAGTTCAATTCCGGTATGCCCCAAGAGAAGCTAATTCTGTGGCAGACAG CCTCACTAAGGCCGCCCATGTGTTTGGTTTTGGTGCTCATGTGTTGCACACTCCTCTGGCGGAATGTCGCCATCTGTTGT TCCAGGACACGGAGGAGGCGTTAACCTCTCTCCGCGTACCTGTTGCTTAGCGTTTCTTCGCTTTTCGGGGCCTTGCCCCT CCATGTTACCAAAAAAAAAATACGTTAGTCCTAAGTACATGAAGATACAACTCTTTATCAATTTGTATTTTCTCGCCCTG TATCTTTTCACAAAATCCATGATACAAAAACGTGGCATATTATTTGCACTCTTTTATTCCCCAAGTTATCATCATTTTAT TACCAGACAGCATCTGCTAATCCAGCCATCCATGAATAGCATATGAAGTTGAGTCACACATAGAGAATTACAAGTTACAA TACAA
CDS sequence (LotjaGi1g1v0130600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGCTCAATTGGGGCTTGATTTCAACTCCAGATGCACTGTGGGTCCGTGTCTTGCGTCATAAATATGGGTGTGGGGA CGATGAAGTACCTATGGTTGCTCGCAGAAGCTCGGAATCCTCAATCTGGAATAGGATTCGCAGTACTTGGTCAGCGTTCA GTCGTGGTATTTGTTGGCAGCTTGGGAATGGGAGGAGTGTGCATTTTTGGACTGACAGGTGGCTTGTATCAAGGATTTCT CTTGAAGAGGCTGCTCTCCATTTAGCCCCACCTCATCTGGTAAACTGTTTGATGTCTGATTTCTACCATAGTGATCGTGT GCGCGGGTTGGCACAAATAAGAGAGCTTGTACCTGATGTGGTTTTTCAGGAGGTTCTCTTGTCTCTTCCTGCTACCCTTT CTAACGAGCCCGATGTTCCTGTGTGGGGTGGTACGAGTACTGGAGTATTCTCCACGCGCTCTGCCTATGAGCTTCTGACA GAGGACTGGTACGACACTACAGCTGATCCCGTTTGGAGGCTACTTTGGAATTGGAAGGGAGCACCTCGCCTTCGGCTACT GGTTTGGAAGGTTCTCAATGGCGGATTGATGGTCAATGCGAAGAGGGTTTTGAATCATCTGGATGTGAGTTCGTGCTGGC ATGCTTTTCTTCCTGGTACAGTGGGCACTCCTTTTTTTACTTTGAACTTGCGTGATTGGGTACATTGGAATTTGAGCGGT GGTCCAACGAGAAGCGATTCTGAGGATTGGGTCCGGCGCTTTGTGATATGCCTCGCGAGTGTTTGGCGCATGCGTAACGA GGTGGTGTTCAATCAAACCCCTTGGGAGCTTGGACAGGTGCTGGCGTGGGGTACGTCTAGCCTCCATGATGATTCTGTAG CAGCAGCATTCGATGATTCTACAGGCCCTCGGAGTGAGACAAGCACTGGCTGGTTGTTTCCCTCGGTGGGGTGGTTAAAG TATAATGTCGATGGCTCGGTCTGGGGCACCGGGGAGGCTGCTTGTGGGGGTGTTCTTAGGGATAGCTCCGGGCACTTGGT CCATGGTTTCTGTCGTTGGTTGGGTACTTCGAATCCATTCATGGCTGAACTTTGGGCAATCCGTACGGCAGTTGAGGTTG CTCCATGGCCTACGTGCCCTCGGATGGTGATCGAAAGTGATTCTTCTGAAGCCATTGCTGCATTGACTACCACAGGAACT TTAGTGCACTCTTTCTTGGGGATGGTGTCTGCTATACGTCGTGCGATTCCTCAGGGTGTTGAAGTTCAATTCCGGTATGC CCCAAGAGAAGCTAATTCTGTGGCAGACAGCCTCACTAAGGCCGCCCATGTGTTTGGTTTTGGTGCTCATGTGTTGCACA CTCCTCTGGCGGAATGTCGCCATCTGTTGTTCCAGGACACGGAGGAGGCGTTAACCTCTCTCCGCGTACCTGTTGCTTAG
Protein sequence (LotjaGi1g1v0130600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKLNWGLISTPDALWVRVLRHKYGCGDDEVPMVARRSSESSIWNRIRSTWSAFSRGICWQLGNGRSVHFWTDRWLVSRIS LEEAALHLAPPHLVNCLMSDFYHSDRVRGLAQIRELVPDVVFQEVLLSLPATLSNEPDVPVWGGTSTGVFSTRSAYELLT EDWYDTTADPVWRLLWNWKGAPRLRLLVWKVLNGGLMVNAKRVLNHLDVSSCWHAFLPGTVGTPFFTLNLRDWVHWNLSG GPTRSDSEDWVRRFVICLASVWRMRNEVVFNQTPWELGQVLAWGTSSLHDDSVAAAFDDSTGPRSETSTGWLFPSVGWLK YNVDGSVWGTGEAACGGVLRDSSGHLVHGFCRWLGTSNPFMAELWAIRTAVEVAPWPTCPRMVIESDSSEAIAALTTTGT LVHSFLGMVSAIRRAIPQGVEVQFRYAPREANSVADSLTKAAHVFGFGAHVLHTPLAECRHLLFQDTEEALTSLRVPVA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 41 | 473 | 433 | 9.3E-58 | – | |
| PANTHER | 41 | 473 | 433 | 9.3E-58 | – | |
| ProSiteProfiles | 315 | 444 | 130 | 8.774 | ||
| SUPERFAMILY | 318 | 443 | 126 | 1.15E-13 | ||
| Gene3D | 318 | 443 | 126 | 6.5E-16 | ||
| CDD | 322 | 440 | 119 | 6.73061E-25 | – | |
| Pfam | 322 | 442 | 121 | 5.1E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA-DNA hybrid ribonuclease activity | Catalysis of the endonucleolytic cleavage of RNA in RNA-DNA hybrids to 5'-phosphomonoesters. |
Expression pattern of LotjaGi1g1v0130600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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