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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0131800 |
| Transcript ID | LotjaGi1g1v0131800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT4G10400.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q9LXJ7|FBD11_ARATH FBD-associated F-box protein At3g52670; TrEMBL-Plants: tr|I3SBU3|I3SBU3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0131800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:21125509..21127409) extracted from Lotus japonicus Gifu genome v1.2.
ACCCTAGCCGTTCTTCTTCTTCCTCTGTCACTCTCTCTTCCCCCTCAACAACCCAAAGCTCTTCTCTCTTACCCTAGCCC TTCCTCATCTTCTTCCTCTGTCACTCTCTTTTCTTCTCTCCCTAACTCGCCACGATCCAAGCTTCTGTTAAAAATTTTGT ATAAATTGTTGAGTTTTGGTTATAACTTTCATCTTGTCTAATTATTTGGTTATAAATTTCATCTTCTGTTCTTTGTCAGA ATGGCTGATGACATTATCAGCATGTTGCCAGATCAAGTCCTTTGTCACATTCTCTCTTTTCTTCCCATTCATATTGCTGC AGCCACAAGTATTCTTTCAAAGAGGTGGACACCATTGTGGCTCTCGGTTCCTAGCCTATACTTTGATGACCGAAGCTATC TCTTGAACAACAACAAACCCTATGATTGTTTTAACAAGTTCATATACAAAACCATTGTTGCCAGAGATGCGCATCTACCC ATTAGAATGTTTCGTCTCAAATGCAGGGCTTCCAATTTTGAGCTTTCTGATTATGATCTCAATACATGGATCAATGCTGC AACACAACGTGGACTTGAGGACCTCCACATTAAGCTGCCCATTACAAGTACTACCGTGCTGAGGATGAGCCGTGTTTTCA GCTGCAAAACTCTTGTTGTTCTGAAGTTGACCGGGTTAGATGTGAATGTGTTTTCTTTTGTTGATCTTCCCTCACTCAAA ACTCTGCATTTGAGTCAAGTTGGTTTTCCAAAACCGCAATATCTCATGGAACTTCTTTGTGGGTGTCCAATTCTTGAGGA TATGTATTTGTATAATATAACCTATGTTGACACTTCTACTCCTAGTGATAAGAATTTTAAAAGTCTATCCAAGTTGGTGA GGGCATTTATTTATAAAATTGGCTTAGATATTCCTCTGATGGCGATTTGCAGTATACAATTTCTTCTCATTGACAAGGTT TGTGTTTATGTCAAAGAAAATGTGTTTTTCATGTTATTAATTTTAGAAAGTTACTAATATTTGTGTTTACTCTTATTAAC TCTTGCAGTACTGCGATGCTATTCCAGTTTTTCCCAATTTAACTCGTGTGGATCTCATTTTTGGGAGTGATATGAGTTGG CATTTCGTACTTTCAATGCTAAAGAAGTGCCCTAAACTTCAAATTTTGAAACTTGTTATGCGGAAAAGTTCTCATGTTGC GGTCTGGGCCTTCCCCTGTTTTGTTCCTGAATGCCTTTCTTCACAGCTTAAGACGTGTTTTATTATGAATTATAAAGGCG CCAGTGAGTTGCATTTTGCAAAATATATTATGGAGAATTCAAGAGCTTTACTTACGATGGCAATAGGCACAACGTCTTCT TCAAAATTAGAGGACAAGTTTCAACAGCTGAAAGAATTATCCTCATACCCAAGGACTTCTCCAATTTGTCAACTTTTATT TATATGAGAATGAGAATAACTAATAGGCTGTAGACAGTAGCTGCGATTTGTGTTTAGATTATTCCATTTTGCTAGTGTAC TGAAGGGCATGTAATTTGTATCTTGATGATAGTTCTTAAATGTCATACATTTTCAAGAGAGTGAAGATTTGTATTTTCAA TTAAATGGCTTGCATCTTTGAAGTTATAATCTTTTGTAACTTTTTGGAGTTGAATAACATCTATTTGTGCCTATTTTGTG GTTATTGATCTGCTCATTAATATTGATCTGGTACTGCATTTGAAATATGGATGTGTTATTGAATTTGCATCATTGTCCTG GTGGTAGAGACTAGACACTGAAGAAATAATCTACGGATTTTTTTATTTATATATTTTGCATACACATACTGACATACATA TACAAACCACATGAAACTGATGAAAGTAATTAACAGCACTTGAGGATATTGATCCTTTTAG
CDS sequence (LotjaGi1g1v0131800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGATGACATTATCAGCATGTTGCCAGATCAAGTCCTTTGTCACATTCTCTCTTTTCTTCCCATTCATATTGCTGC AGCCACAAGTATTCTTTCAAAGAGGTGGACACCATTGTGGCTCTCGGTTCCTAGCCTATACTTTGATGACCGAAGCTATC TCTTGAACAACAACAAACCCTATGATTGTTTTAACAAGTTCATATACAAAACCATTGTTGCCAGAGATGCGCATCTACCC ATTAGAATGTTTCGTCTCAAATGCAGGGCTTCCAATTTTGAGCTTTCTGATTATGATCTCAATACATGGATCAATGCTGC AACACAACGTGGACTTGAGGACCTCCACATTAAGCTGCCCATTACAAGTACTACCGTGCTGAGGATGAGCCGTGTTTTCA GCTGCAAAACTCTTGTTGTTCTGAAGTTGACCGGGTTAGATGTGAATGTGTTTTCTTTTGTTGATCTTCCCTCACTCAAA ACTCTGCATTTGAGTCAAGTTGGTTTTCCAAAACCGCAATATCTCATGGAACTTCTTTGTGGGTGTCCAATTCTTGAGGA TATGTATTTGTATAATATAACCTATGTTGACACTTCTACTCCTAGTGATAAGAATTTTAAAAGTCTATCCAAGTTGGTGA GGGCATTTATTTATAAAATTGGCTTAGATATTCCTCTGATGGCGATTTGCAGTATACAATTTCTTCTCATTGACAAGTAC TGCGATGCTATTCCAGTTTTTCCCAATTTAACTCGTGTGGATCTCATTTTTGGGAGTGATATGAGTTGGCATTTCGTACT TTCAATGCTAAAGAAGTGCCCTAAACTTCAAATTTTGAAACTTGTTATGCGGAAAAGTTCTCATGTTGCGGTCTGGGCCT TCCCCTGTTTTGTTCCTGAATGCCTTTCTTCACAGCTTAAGACGTGTTTTATTATGAATTATAAAGGCGCCAGTGAGTTG CATTTTGCAAAATATATTATGGAGAATTCAAGAGCTTTACTTACGATGGCAATAGGCACAACGTCTTCTTCAAAATTAGA GGACAAGTTTCAACAGCTGAAAGAATTATCCTCATACCCAAGGACTTCTCCAATTTGTCAACTTTTATTTATATGA
Protein sequence (LotjaGi1g1v0131800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADDIISMLPDQVLCHILSFLPIHIAAATSILSKRWTPLWLSVPSLYFDDRSYLLNNNKPYDCFNKFIYKTIVARDAHLP IRMFRLKCRASNFELSDYDLNTWINAATQRGLEDLHIKLPITSTTVLRMSRVFSCKTLVVLKLTGLDVNVFSFVDLPSLK TLHLSQVGFPKPQYLMELLCGCPILEDMYLYNITYVDTSTPSDKNFKSLSKLVRAFIYKIGLDIPLMAICSIQFLLIDKY CDAIPVFPNLTRVDLIFGSDMSWHFVLSMLKKCPKLQILKLVMRKSSHVAVWAFPCFVPECLSSQLKTCFIMNYKGASEL HFAKYIMENSRALLTMAIGTTSSSKLEDKFQQLKELSSYPRTSPICQLLFI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 367 | 364 | 1.3E-76 | – | |
| PANTHER | 4 | 367 | 364 | 1.3E-76 | – | |
| SUPERFAMILY | 4 | 50 | 47 | 4.84E-10 | ||
| Gene3D | 5 | 221 | 217 | 9.8E-20 | ||
| SUPERFAMILY | 109 | 281 | 173 | 8.37E-12 | – | |
| Pfam | 158 | 183 | 26 | 1.5E-4 | ||
| Pfam | 297 | 338 | 42 | 6.6E-11 | ||
| SMART | 300 | 371 | 72 | 1.7E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0131800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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