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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0139000 |
| Transcript ID | LotjaGi1g1v0139000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cyclin-like protein; TAIR: AT5G65420.1 CYCLIN D4;1; Swiss-Prot: sp|Q6YXH8|CCD41_ORYSJ Cyclin-D4-1; TrEMBL-Plants: tr|I1MAZ0|I1MAZ0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0139000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:22745762..22749652) extracted from Lotus japonicus Gifu genome v1.2.
TCTCTCTCTCTCTCTGACCCTGACCCTGACCCTCTTCTCCCACATACAGAGAGAAAAGATCATAGAATGGCAAAGACCCT TCTTTGGTTTCTACGATTTTGGCGCTTAAACCCTTCTCCTTCTCACTTCTCAGACTCCTCTGTCCCCCACACACTTTCTC TCTCTTCACTCTCTTTCCCTTCTTCTTAAGGCCCCCTCCTGCTCCAGTCTTTTCAGCAAAACAAAAATGGAAGAAGAGTG AAACACAGAAACACCAACATACATCACACACATATATATATATATATATATATATATATATATATATATATATATATGTA CACACATATACAGACAGACACAGATTCATAGAGAGAGTGAGAAGCAAAGGACTATCTGGGTCTGCAGATTTTTTTGTTCT TAGTTCACAGATTTTCATTTGATCTTATTAATCATCATTTGATAAGAGATCTCAATACCCCAGAGCTTTTTCTGTCTAAA AGACTCCATCTTTAATCTGAAACCTGTGTTTTTCAATCTTTTTTGATACTGGGTCTTGTGTTTTGTAATAAAAATTTGAT TTTTATTTTTCACTGAATCAAGTGAGGTTTTTTTGAGCTATTTCAATGGCACCAAGTTTTGATTGTTTTTCTAGCCTTCT CTGTGAGGAAGATGCTAGTATTTTTGAGGATAGTGATTATGGGGGCTCCATGGAGATGATGGTGGAGGAGACATGGAATT CTAGATATGGTGGAAACCAGCACTATGGTGATCCAAATCCAATTGGGGTTTTGCCATTGCTGAGTGATGAGTGTTTTGCT TTAATGGTGGAGAAGGAATCACATCATTTGCCTGGTGGTGATTATGTGAATAAGCTGAGGAGTGGGGATTTGGATTTTGG GGCTAGAAAGGAGGCCATTGATTGGATTGAAAAGGTGGGTTCAAGAGATTGTTTGATCTTTTTTGCTTTGTGTCAATTTA GCTGTGGACTGTTTTTTCCTTAATCATGAATTGGGAATTTATGAAAATCTTCATATTTTGCTTTTGATTGTCTTAAATTT GCGCAATACTTTATCCAAATGGAAGAATTTTATCTAGATTTGATTGCCTCATTCTTTGTTTGATGATGATTCTGTTGGTG AATCTGAGTTGCTTGAGAAAAATGTATGGATTGTGAATTTTAGGATGGAGATTATTGGATGCAACACTTTGGTTTATGCA TATTTCTGCTGATTTTAACATGTTGAAAACTAAACCAGCATTAATTTTGTATCAATTTGAAGCCATTGTCTCTTGAACAA GTAAAGATTGCTCTTTGATTTGATCTGACTAATGGACTAATAATGTATCTGTTTTATAGGTCCGAGAGCATTTTGGTTTT GGACCTCTATCTGAATATCTATCCATCAACTACTTGGATCGATTCTTATCTTCATGTGAATTTTCAGTAAGTCAATAATT CAACGAAAAAATAAGTTTTTTTTTTTCTTCTTATGTTCAATTGTTGACTGGTTTTGATCTGATGCTTCCTCTCTCAGAAA CAAAGAGCTTGGACAATGTCATTGCTTGCTTTGGCATGCTTATCTCTTGCAGCCAAAATAGATGAACCTAAGGTTCCTCT GTGTCTTGATTTGCAGGTAAATTCTTTTAATTGATGCAATCTAGTTTGAACATGTTAAGTCAAATATCTTTGATTACATT GTGGTGATTGGTTTATCTTTTTGTTTTTTTCCAGGTGGGTGAATCTAAGTATGTGTTTGAATCTGAAACAATACAAAAGA TGGAGCTTATGGTACTGAACAAATTGGGGTGGAGAATGCAAGCAATTACCCCTTTCTCCTTCATTGACTATTTCCTTTCC AAGATCAGTGATGATGAAACCACACTAGGAGCTTCAATTTTGAAATCTGTCCAACTTATTCTGAGTGCTGCAAGAGGTAA CTTTCTGTTTGTTTTCTTGTCTAACTCTCTGCAGCAATGTTTAATTATGATAGTGAGGAACAAAAGATGATAATTTGGAG TGTGGGAATCCAATGCAGGTATTGACTTCCTAGAGTTCAAATCATCAGAGATTGCAGCAGCTGTGGCATTATCTGTGGTG GGAGAAACCCAAACAGGTCACACAGAGAAAGCCATTTCTGTTCTTATTCAACATGTAGAAAAGGTAAAGATGGTGGTCCA AGAACAATAAATAAAAGTTAGCATAATGATGGTTTTCCTTTTTAGTATGATCGTTTTAAGTTGATTAATTGTAACTGATG GTGCATGCTTGAAAACCCTTCTACAATTAATTCTTCCTTCTACATTTAATTTTGAAGGCATAATCAATTATAGGTAGGGA CTTCTGTGAGTGTATTTAGATCAACATTGTCTAAAATTTATTTTGATTGAATTGATTTTAGTAAAATTGATTATGATAAA TGTGAGTTGAAATGGTGTAATTTATGTTTGGATACCTTCATGAGAAAAGTTGGCTTTGTAGGGTAATATTATGAAATTCA GTTGTAAAATCTCATAATTGATTATGTTCAATGTAGAAGCTACTCTCTCTGGCTTTTAGCAGAATAGTCATCCAAAATTG ATTTTACACTATCAGAATTAATTCTTATGTTTTTTCCAACAAGGAACCAAACACTGCATAACTTTTGGGTTTCAAAATTA ATTTTGGTGAAAGAGAAGTGCATGTAAGCATGTTAGGAATGCAATTAATTGTGACATGGTTTAATTGATATTTACATTTG TCTTGTTTTTATGGCAGGAGAGGGTATTGAAGTGTGTTGAAATGATCAATGAGTTGTCATCAGGTGGTGGTGGTTCTGCC AGTGATGCTATTGCTGCTTCTGTTTCTGTTCCCCAAAGCCCAATAGGGGTGTTGGGTGCTGAATGCTTCAGCTACAAAAC TGATGACACCACAAATGCTGGTTCATATGCAAATTCTACACATAATAATAGTCCTGATGCTAAACGGAGGAAGCTAAATC CAACATTTGGAGTATAGCTATTTTGGGTTGGAAATTTTACCATCACTCATAAAATTCTTTTCTGGAAAAGGATTTTTGTT TTTGTTTTATGGGTGGTGTTCCTCTCAAGGGAAAGCCAATCAAGGAAGCAGGAAGATAGATAGGAAAAATGAAATAATAA AAAAGCCAAAAAAATAAGAAACCCAAAAAAGACAATAAGTGGCGGAAATAGAACTTACTAGGATGAGACATATTTTGGGG CATTTACTTTAATCATGTCATTATCTTTTATACTATTGGTTATTAAACAATTTTTACTGTTTTTGAAACAGTTAAAAAAA ATATTATTGCTTTGTCACCATATGGATCTTGATTTTGTGTGTCGTATCAGCAGTTCAATTGGACACTTTGACCTAGTGTC TATTTAGACCATTGCTAGGTGTTTGATGATAAGGATTCGTGAACATCTTTTGACTGTAGAGAGATAAAAAGGGAGAAAAA AATAAGTGATAAAATAATAAAGCTGTCTTGTGTTCCAAAATCTCGTCATAGGACACAACTTGAATCATAAGTAGAAAATT ATGTAGTTTAGTTTTTAATTCCTGAGGTAGCACCTAGGTATGAAAAACAAATTACTAAAATCTTATACAAACCGGGTTGG ACTCAAGTAGATAGAAAGTCCTTTTATAAAGCATTGTTGCATAGGTAACGTAGAGGTGATGGAGCATTATGGCCTCTAAG GTTGGTGGGCTCTTTTATTACGGGCCATTGAGGCTTGTGTTTAAAATGTTCTATTGACTCTTGGGGATTGTTCTCTTTGT CTGAGAAAAAAACCATTTTCTTGGGACATGGTTGAGTGGTAACTAGGAATTTGTTTTAGTTGACCTAGGGAAACAAAGGA ATACTTGATGCGAGTGCTAAGTAGCATAAGGACACACTAAAATGACACCCC
CDS sequence (LotjaGi1g1v0139000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCACCAAGTTTTGATTGTTTTTCTAGCCTTCTCTGTGAGGAAGATGCTAGTATTTTTGAGGATAGTGATTATGGGGG CTCCATGGAGATGATGGTGGAGGAGACATGGAATTCTAGATATGGTGGAAACCAGCACTATGGTGATCCAAATCCAATTG GGGTTTTGCCATTGCTGAGTGATGAGTGTTTTGCTTTAATGGTGGAGAAGGAATCACATCATTTGCCTGGTGGTGATTAT GTGAATAAGCTGAGGAGTGGGGATTTGGATTTTGGGGCTAGAAAGGAGGCCATTGATTGGATTGAAAAGGTCCGAGAGCA TTTTGGTTTTGGACCTCTATCTGAATATCTATCCATCAACTACTTGGATCGATTCTTATCTTCATGTGAATTTTCAAAAC AAAGAGCTTGGACAATGTCATTGCTTGCTTTGGCATGCTTATCTCTTGCAGCCAAAATAGATGAACCTAAGGTTCCTCTG TGTCTTGATTTGCAGGTGGGTGAATCTAAGTATGTGTTTGAATCTGAAACAATACAAAAGATGGAGCTTATGGTACTGAA CAAATTGGGGTGGAGAATGCAAGCAATTACCCCTTTCTCCTTCATTGACTATTTCCTTTCCAAGATCAGTGATGATGAAA CCACACTAGGAGCTTCAATTTTGAAATCTGTCCAACTTATTCTGAGTGCTGCAAGAGGTATTGACTTCCTAGAGTTCAAA TCATCAGAGATTGCAGCAGCTGTGGCATTATCTGTGGTGGGAGAAACCCAAACAGGTCACACAGAGAAAGCCATTTCTGT TCTTATTCAACATGTAGAAAAGGAGAGGGTATTGAAGTGTGTTGAAATGATCAATGAGTTGTCATCAGGTGGTGGTGGTT CTGCCAGTGATGCTATTGCTGCTTCTGTTTCTGTTCCCCAAAGCCCAATAGGGGTGTTGGGTGCTGAATGCTTCAGCTAC AAAACTGATGACACCACAAATGCTGGTTCATATGCAAATTCTACACATAATAATAGTCCTGATGCTAAACGGAGGAAGCT AAATCCAACATTTGGAGTATAG
Protein sequence (LotjaGi1g1v0139000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAPSFDCFSSLLCEEDASIFEDSDYGGSMEMMVEETWNSRYGGNQHYGDPNPIGVLPLLSDECFALMVEKESHHLPGGDY VNKLRSGDLDFGARKEAIDWIEKVREHFGFGPLSEYLSINYLDRFLSSCEFSKQRAWTMSLLALACLSLAAKIDEPKVPL CLDLQVGESKYVFESETIQKMELMVLNKLGWRMQAITPFSFIDYFLSKISDDETTLGASILKSVQLILSAARGIDFLEFK SSEIAAAVALSVVGETQTGHTEKAISVLIQHVEKERVLKCVEMINELSSGGGGSASDAIAASVSVPQSPIGVLGAECFSY KTDDTTNAGSYANSTHNNSPDAKRRKLNPTFGV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 318 | 312 | 3.5E-113 | ||
| PANTHER | 7 | 318 | 312 | 3.5E-113 | – | |
| SUPERFAMILY | 54 | 193 | 140 | 6.12E-32 | ||
| Pfam | 63 | 193 | 131 | 2.0E-24 | ||
| Gene3D | 64 | 284 | 221 | 2.8E-45 | – | |
| Gene3D | 77 | 194 | 118 | 2.8E-45 | – | |
| CDD | 94 | 133 | 40 | 6.2161E-6 | ||
| SMART | 99 | 187 | 89 | 8.4E-14 | ||
| Pfam | 196 | 294 | 99 | 3.9E-11 | ||
| SMART | 196 | 321 | 126 | 1.1E-7 | ||
| MobiDBLite | 329 | 353 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. |
Expression pattern of LotjaGi1g1v0139000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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