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LotjaGi1g1v0142300.1

Overview

Field Value
Gene ID LotjaGi1g1v0142300
Transcript ID LotjaGi1g1v0142300.1
Lotus japonicus genome version Gifu v1.2
Description Cytochrome c oxidase subunit 6B; TAIR: AT1G22450.1 cytochrome C oxidase 6B; Swiss-Prot: sp|Q9S7L9|CX6B1_ARATH Cytochrome c oxidase subunit 6b-1; TrEMBL-Plants: tr|I3SPQ0|I3SPQ0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0142300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:23611320..23616918) extracted from Lotus japonicus Gifu genome v1.2.

ATATAATAATTAAAAAAAAAAACTTGACCCGAATGTAGCTTAGCTTAACATTGGTCACCACACCAACGCAAGCACCTTCG TTAGCCTCGCATTCCAGAGTTCGCGTTTTGACCTACAGCACCACACCAACCAAATCTCCCACTCGTGTTGTAGCCGCCTC TTCCTTCCATCAATGGCGGAACCTGCTGTCGAAAACTCTCCTACTCTCGCTGAGGTTCTATTCCTTCACCTCTCTTCAAT CTATGCTTTCGATTTTTATTCATTTTTCTTCTCAATTTTGCTTCCAAATCGCCATGGATCTTCGTGTTCGTTCCAGTTCT TTTCATTTTATGAATCAGAAAATGTAAATTGAAGCTTGATTTAGCTAACCCCCAATCTAGAGTACTCTCAGCTAGGTCTT GATTAATTAGCTTTTATTTTTTAAGCATAACACATGACATTTTGTAGTCTGTTACATCTGCCTAAGAATTCTATGTCAGA TCTGTATCGTGGGTGCAAATCAAGTCTCTATATTGCTCAAATTAGGTGATTCTAGTGATGAGTACTAATCTCTCGTTCCA CTGTACTTGTTTGGTAGTGTGTTTACAAAATTGATTTTTTGGAAATTTTTGCGCAATTGATGTTTGGAAACTTTTGTCTA AACCAATGCAAAATTACATTGGTTTAGTTTAAGTGGGTTTGGAAGCAAGTAAAATTTGGTTTACAGTACCCCGAGCAGGC TTGTTAATAGCGTGCTATAGCGGCACAATAGCCTATAGCGTGCTATAGCGGCACAATAGCCTATAGCGTAGCGCCCTAGG GGTTCACCGCTACTCCACTATTCACCGCTATAGGGCCTCAATAGTGCTTGAAATAGCGTTTTTTGGGCTTGCCGCTACAC TACGCTATCCACCATTAACAACCCTGCCCCGAACATGCGACAATCACGTTTGGGAGCTATTCGGGGGAGGGGTTAGGAGC TTCTGAACTCCAAACCCAACGTACCATTAGATTTTTTTAGAATGACCAAAGGGTTAGATTTTTACTTGTGTCATGCTTAA TTCGATAGTATAGAACTATATACCCAAGTTGCTTACTTTACTCACTGAGGATGATAAATCATTTAAATGAAACACATGTC ATGGAACTGGAATCTGTGATAGGTAGAATTGTTATGTGTTGTTAGCTTCTATATTTCCAGTTACCAGCGATGACTGATGA CCTTTTCCCTCAATTTCCTCGGCTCAATGTATAACTTTTTTACCTCGAATTTTTGTTCTTTAACACTTGAGTGACCGGAT TTCGATTGTTATGTAGAATGTGAGATGAAGGTAGTGCCTAATGTATCTTTTGACCTGCAGCAATATTATGTGAAGGACAA GCAGGAGGAAAAAGTTGTAGTTGAGAAACCTGTTGAAGTTAAAGAAGTTGAAACCCCTAAAGAGGTTGCTCCTGAGGAAA CTGTGGTTGAGAAAACTGTGGAAGAAACAACACCTGTTGCACCTGCAGTTGTCGAGGAAAGCAGTGAAGTCCCCCCTTCT GCTGAAGAAAGCACTGAAGTGCAAACTAGTGAGAGTGTTGAAGAAGAAAACTCTGGTGATCAAGAAGCAGCTGAAGAGAC CCCAGAAATTAAGGTGATATTTATATTACTGATTACTGAATCATCCGTCTAGAATTTGTTCTTGAGTACTTCATAAGCCA GTTTGATAATTCGTCCTTCCATATATTTATATTTCTGATATTATTTCCCAGCTTGAGACTGCTCCAGTAGATTTCCGTTT TCCAACTACAAATCAAACAAGACATTGCTTTACCCGATACATTGAATATCATCGGTGAGTCATACTCTATTAGTTTTATT TCTAGTGATCTTTTGTTGTTCTCACGCAGGTAAGAATTGCATCACTCTTCGATTTTAACCTTTGAAATTCTTGTGCAGAT GTGTAGCTGCAAAAGGAGATGGTGCACCTGAATGTGACAAGTTTGCGAAATATTATCGTGCTCTTTGCCCTGGTGAATGG GTATGTATTTACAATGATGATTATGAGTATCATTGATTATCTGCTAGGAACTAGGATCTGCTTGTCTAATAAGATTTATT TACTGACATCTCTTAGTCCTAGTCTCAATTTTCCATCTGTTTTTTGTCTATCTGGACTTGGCATGGAATATTGGTAATAG AGTGGGATAATTTACTTTTTTGGTTGTAACACAAAATCATGCTAGGAATTGGCATCTTGCATTGTACAACTTAGGGTCTA TTTGTCTGGCTTAAAAAAATTGTTTTCATTTCTTGTTTTTACTTTTAATTATTAAAATGTTCACTTTATTTCTTGTTTTT AAAGATTTGCCTCTACTCTCTAGGAAATTTGATAGGAACTCAAGGTTAGGGGTTAGTTAGTTAGTTAGTTATACTTAGTG AGTTAGTTAGAATGTTGTTGAGGCATGTAGCCTATAAATAACAGACATTAGAGAGTTAGGGGTATCTTTGTATTCAGTTA GGAATTGGGTTAGAGAGAGAAGTGGTTCTCTCTTTAGGCTTGGAAAGGGTGTTTGGTATCCCTTTCTATTGTATCTCTCC CTAGTTTCCAATTGGGAATTAGGGTTCTATCAATAAACTCTTGCTAATTTTCTGGTTTCTATCAAAATTGTTTACATATA TGTTAAACCACAAAAAAGTGAAAACTAGGTGGCAATTTTATAGTTAAAAGTGAAAGTGTTAAAAGCAGAAAACATTTTCT GAAACCTATCAGACCCACAGCATTTCTATTCTTTTAAATCCACTTGTTATGATATCTGACTTTATGTTAAATCATAAAAT TATTACCTGTGAAAAATGACAATAAAATAACAACCGTAGTTATTAAATGTGTAAGGCTGCTTTATGGATTCTTCTTCTGG GATATATATGGACGGGTGGGTATTTAGTTGTGTAGATTTAGCTCCTTCAAAGTAGGAACTCACTTTATTAGAGGAGAAAG TAAGGTATCACAATCAGTGGTAGGAAATTGATAGTCAATATTGCATACACATTCATAACAAATCGTGGATTTGTTAAAAT AAACTCCCTTGTTTTTCTCATTAACTGTTGAGATACTTTAATAAACAATGGATCTTTATGGCATTGCCTGGTTCATGTTT CCGATCTCGCCTAGTGGGGAAATGGCTTGGTTGTTGTTGAGATATTCACTTTAGAGGAATCCAATTCAAATTGGGGAGAA ATGAATGTTTATATATGGATAGATGTATGATTCTTTAGACCTTGATAATTTAACCTTTTATGTTAATTTCTGTTAGCTAC TAGTCTTATCTCTTTATCATCATTAACTTGTTAGCATACCTTTATCCTTCAACTCGTGGCTTTACCACTTGGATTCAGTT TATTCTTTAAGTCTTTAAGATGTTGAACAATTTTGCTCAAATAAATGATGCCTTCATACTTCAACTCCTGTAGCTTAACA ACTTGGATTTGGTTTTATTCCTTTACATGTTGAATATTCATTCTCAGATAAATCTTGCTTCTCTTACCTCAGAAAACATT TCCATATGAAGCTCTTGATCTTCTTGGAATTAGAATATTTTTGGGTGGACCAAATCCACACGTCAAAACAATGACTTGTG AATGTGTTTTTTTTAGGTTTTAAGTTTTAAACACTTCATTGGACAAGATTATATGTCTGATATAATCGATGCAAGCAGTG TTTAGTGGTCAAAGCTGGTGTGTATATTGCTTAAATTGAATTTCATTATTCTGTTTGTGTGAGGGTCGACCTTAAGTTTG GCATTTATAAATTGACCAAAATGTGAGTTGCATTTAGCAATAGCAGTGGGTACGGTACTATAGTACCTATTTCCTTACTT GTAATTTTGAGAAACTACATGAACCTATACCCGCACGGGTGGTAATTTTAGTGTTTGTTGTTTTGTACCCTTACTCATAG CCATAGGGTACCTATATTATTTGTATTTTTGTTAAACTGAATATGGTCTCTTGTGTTGGTGAACCTAAAAAGAGTATTGA TTAAATTTGCAACATATACATCAAGTGAAAGAATGTTTAAATTTACAAATTGAATATATAACATATTTCAAAAACATTTC AAATCCTAATTATAAGATTTATTAAGTATACCTGGAATTGAACAGACATAGTTAGTGGTAAATCCCGACCTACCCATTGT GGGTAATTTTTACGGGTACCCATTAGATGTGGCTTTAAAGTTTAACATCATTGTGTGTGTAATATTTAGTATTTACAGTG ATTCTCTTATTATTTCTAATTGATGCCTTACGTTTACTTTTCTATTAGCAGTTGCATTAGATCAAATTCAAATATCTGTT TTTTTCCTTCTCAATGGCTGATTAGTTAATCTCACAGCAAATAATTTATTTTCTCTGCTCCTACCAATTTTGGTATTTGT TCTTATGCTAACAGTCAGTTTTCACTGATTTATCTATGCAATCAGGTTGACAGATGGAATGAACAAAGGGAGAATGGGAC ATTCCCAGGCCCGCTGTAGGTGTTACATTTGCAGTATTACATTTTAAAATTGCTAGAGATAAACTCTCGAACATTTGGAA GAATGTTCCATGTTACGTTTCGGGCTAATAAGAAGTTTTGGTTATCTATTTAAACTAAACTTGAGTTGTACAAATTCCAG GAAATGCTTCTGGTGATAATCCTGAGATATGCGTTGCTATTTACTGGATTCTGTACTCTTTTTGAGGGATTGTTAATTTC TGTTCTATGCCACCAAAATAATGAAAGTACCATGAAGTAAAAGATCAAGAGGGTTAAATTATGTTTCAACAGCAGTTGAA GGTTTAACCAAGTTTTAGCCGTACTTAAGTTAACCAATGACTACTAATCAGCAGGTGACTATCAGTTGAAATATTGTTAA ATTGGGAAAGAATAGTGGCTTAAATACTCTATTGGTTCCTGAAATTGTAAAGGGAATCAAACTTGATCCTTGTAAAATTT TCGCATCAAATTGGGTCCCTAAAATTGTTTTTTAAATCTAATTGGGTTCAAAGTGTGTTTCAGCATGATGTGGAACAAAT TTTACCCAATTAGTATTTCCACATGGATTTATATTTTATTTTTAATGCAGATGGGTAAATGATTTTAACAAATTAAAATT AAATTCGAATTAAAAACTTAATTTCTCATCTCTATTCATCCCACACAGCCTCCTTCTCATCTTCTCTTTCTGCAATCGAT GGGTTGACAGGGGGAGCTTCTCGTGGTGGGTGGTTCAGCGTTGTGTGGTTGCTATTTGTGAGGTTGCTGGTATTATGGGG GGCGTGGCTTGTAGCAGCGGTGGGTGGTATGGTAGGGGAGGCGGTGATGTTACTTGAGGCCTTGCTTGTATCTGTCTCTG TCCAACAAGGGGTAGAAATGATTGTGTGCCTGGGCTATATTGCTCATTGCTTTCCTCGTGTGGGTTTTTTTTTTCTTTCT TGCCACTGTGCTTTTACTATTGTCTTTGATTTTGATTCCTGCTTGTAAACTTTATTTGGCATAACTTGTGTCGTTTTATC ATATATTGTCATGGCTTATCCAAACAAAAAACCATACCACCATGCTATTGTCTGGATTTCATATATCGGTGTGTGGGTG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0142300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGGAACCTGCTGTCGAAAACTCTCCTACTCTCGCTGAGCAATATTATGTGAAGGACAAGCAGGAGGAAAAAGTTGT AGTTGAGAAACCTGTTGAAGTTAAAGAAGTTGAAACCCCTAAAGAGGTTGCTCCTGAGGAAACTGTGGTTGAGAAAACTG TGGAAGAAACAACACCTGTTGCACCTGCAGTTGTCGAGGAAAGCAGTGAAGTCCCCCCTTCTGCTGAAGAAAGCACTGAA GTGCAAACTAGTGAGAGTGTTGAAGAAGAAAACTCTGGTGATCAAGAAGCAGCTGAAGAGACCCCAGAAATTAAGCTTGA GACTGCTCCAGTAGATTTCCGTTTTCCAACTACAAATCAAACAAGACATTGCTTTACCCGATACATTGAATATCATCGAT GTGTAGCTGCAAAAGGAGATGGTGCACCTGAATGTGACAAGTTTGCGAAATATTATCGTGCTCTTTGCCCTGGTGAATGG GTTGACAGATGGAATGAACAAAGGGAGAATGGGACATTCCCAGGCCCGCTGTAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0142300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAEPAVENSPTLAEQYYVKDKQEEKVVVEKPVEVKEVETPKEVAPEETVVEKTVEETTPVAPAVVEESSEVPPSAEESTE VQTSESVEEENSGDQEAAEETPEIKLETAPVDFRFPTTNQTRHCFTRYIEYHRCVAAKGDGAPECDKFAKYYRALCPGEW VDRWNEQRENGTFPGPL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR46281
1 177 177 3.0E-65 –
PANTHER
PTHR46281:SF9
1 177 177 3.0E-65 –
MobiDBLite
mobidb-lite
39 107 69 - –
MobiDBLite
mobidb-lite
39 53 15 - –
MobiDBLite
mobidb-lite
82 97 16 - –
Gene3D
G3DSA:1.10.10.140
97 177 81 1.0E-34
IPR036549
CDD
cd00926
102 176 75 4.16397E-41
IPR003213
SUPERFAMILY
SSF47694
103 176 74 7.19E-33
IPR036549
Pfam
PF02297
114 173 60 3.1E-16
IPR003213
ProSiteProfiles
PS51808
121 164 44 12.483 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005739
Cellular component Mitochondrion A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0142300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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