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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0143100 |
| Transcript ID | LotjaGi1g1v0143100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein; TAIR: AT4G08980.1 F-BOX WITH WD-40 2; Swiss-Prot: sp|Q9ZPE4|FBW2_ARATH F-box protein FBW2; TrEMBL-Plants: tr|A0A1J7HUY3|A0A1J7HUY3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0143100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:23733793..23736314) extracted from Lotus japonicus Gifu genome v1.2.
GTGAATGCTTTCATAATTCAGATCCAGGACGGTTCACAGGCACCGCCGCGAAAATTTCCTTTGGTAAATTTCCACTGCTT TTTGCTGTGTGTGAGTAATTTATGTTTTTTTGTCTTTTATTCTATCTGGTTTTCTAGGAAATTAAGAAAGGGGGAAAATT GGTCAAGTAGTCGGAGAAATGTTTTTGTGTTATGGGTTTTTCAATTGAAACTGAAACTTCAGTTGTGTTTTCAGTTTTGA ATTCTGCCATTTTTTTAAAATGATTTGGACTGTTGGATTTATATGACAATGGCTTGGAATGTATCTGTGTTTCCATTCTC CCAAGCTTCAAATCCTGAATTTTATCGTGTCTTATATATATTTCAAATTTAAATAAATGGCCCCTTCTCAACCTTGTTAA AAAGAAAGACCTTTTTTAGTTGGTTATAAAGTGTGCTATCAAAACTTTGAATATTTTAAGTTTGGTGATCATTCAATGTG ACATATGTTGTTTCTCTCCAATTTAGGTTCAGGAAGGTTCACTAGACACTGCCCCAAAAATTCCCTCAGGTAAATTTCCA CAATTTTTTTTTACATGAGGAAAATTTCCACTCTTTTTGGCTGTATGTGAATAATTTATGTTTTTTGTCTTTCGCTCTAT ATGGTTTTCTAGGAAATTAGGAAAAGAGGTGGAAATAGATCTTGTAATCGGAGAAATGTTTTTGTGTTATGGGTTTTCCA AATTGAAACTGAAGCTTCATTTTAGTTTTTTGTTTTGAATCCTGCCATTTTTTTCTTTTAGAATGACCTGGAATGTTGGA TCCATATGTCAATGACTTGGAATGCATGTGTGTTTTTTCATTCTCCCAAGCTTCAAGAGCTTTGTTTGTATATGAATGAT CTAGCATTTTTTTACTTCCAATATCAAATCTTGAATTTGATCATGTCTTATATATTTCATGTTTAATTGAATGTCTCATT CTCAACCTAGATAAAAGAAACACCATTTTCAGAAATGTGAATCTTTTAAGTCTTGTGGTCATCCACTGTGACACATGTTG TTTCTCTTTGACTCTTATAATGGGTAGATCTGTATTAAGTTCTTTTGTCCTAACAAGAAACGCGACATTGCAAAATTATC TTCTTTTTTAGGCTCTAAGGAAATGGCATCTGATTTCCGTCCTTGGGATGAGTTATTTATAACGGACGCTATTGGAGATA TCTTTTCAAGGCTTTCTTTCGAAGAAAAAATGAATGTGATCCCCTTGGTATGTAAATCCTGTCACCAAGGAGCAAAGAGA CCATACCATTGGCAAGAGATAGAAATTGAAGATTGGAGCAGCCGTCATGAGCCTGACCAAATTGATCGGATGGTTGAAAA GATGGTTATGATAAGCAATGGATCCCTAAAAAAGTTTTGTGTTTCTGGAGTTCAGAGTCAAGAGGTTTTGATGTTGATCG CGGAAAAGTAAGTTTATTTTCACCGTTTGAACGAAATCTTCGAATTACATACAATATAATTATTATGTTTATGGATTAAA GTATAATATAGATTGAATATTTTACTATTTTGGTTCCCATTAATTTTTAAAATTGATTACCATTTTTGGAAAACATTTTA CATTTGGTTTTTTAAATCCAAAATCAATTATGAGGATAAACTTCTCTAAGTAGCTTCTGGATGCTGTAACTGATTATGAG AAAGAAATAAGCTATTGGTTTATTCATATTTTCACTGTTGTATTAATTACAAGAAATTTATATTTGTGTTCACCTAAAAA TAGTGAGGGTGGTATTTAGGTGTGATTTTGGCTAATTGAACATTTTGCTTATGTGTGTGTTTTCACTCTTTTGGAAGTGC TGGATCCCTCCAAACTCTAGGGTTGCCAAGAAGCAACCTAAGTGATTCTATGATGGAAGACTTTTCTTCGAAGCTCAAAT TGAAAACTTTCTTAGATGTGAGCTATTGTATCCGAATTGGCTCTCAAGCGCTGGAGACCATCGGGAAGAATTGCAAGCAG CTTGAAGTGTTGCGACGGAACATGCACCCAAGTGATACATTCGGCAAGCCCTTGAATGATGATGAGGCATTGGCAATTGC CTCAAACATGCCAAAGTTAAAGCGTTTGGGATTGACCTACAATCTGATGACCAATACGGGCATTCTTCAAATTCTATCAA GTTGTCATGAGCTTGAACATTTGGACCTGAGGGGTTGCTCGGGTGTTAATATTGGCGATATCTTTGTCAATGAGAATCAT CCAAGGCTCCAGGTTCTAGGGCCTCATGTGGAAGATATCGACATGGGGGATGATGATGAAGAGGCCTCTGATGACTCGGA ATTGGAACATCTTATCATTGATCTAGAGGATTGGGCTGTATACTCTGATGGAGAGCTTCAAGGTGAAGAAGCTTCGGAGA CTAGTGATGATGAAGAAAGTTAGGACGGGGATAACGAAGGACCTGGAGATTCTAGATCTCATGAGCCTCCTTCGTCTTCA TAAATCTTAGTATTCCTTGTGAATGGCTAGATTTTATGTTGC
CDS sequence (LotjaGi1g1v0143100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATCTGATTTCCGTCCTTGGGATGAGTTATTTATAACGGACGCTATTGGAGATATCTTTTCAAGGCTTTCTTTCGA AGAAAAAATGAATGTGATCCCCTTGGTATGTAAATCCTGTCACCAAGGAGCAAAGAGACCATACCATTGGCAAGAGATAG AAATTGAAGATTGGAGCAGCCGTCATGAGCCTGACCAAATTGATCGGATGGTTGAAAAGATGGTTATGATAAGCAATGGA TCCCTAAAAAAGTTTTGTGTTTCTGGAGTTCAGAGTCAAGAGGTTTTGATGTTGATCGCGGAAAATGCTGGATCCCTCCA AACTCTAGGGTTGCCAAGAAGCAACCTAAGTGATTCTATGATGGAAGACTTTTCTTCGAAGCTCAAATTGAAAACTTTCT TAGATGTGAGCTATTGTATCCGAATTGGCTCTCAAGCGCTGGAGACCATCGGGAAGAATTGCAAGCAGCTTGAAGTGTTG CGACGGAACATGCACCCAAGTGATACATTCGGCAAGCCCTTGAATGATGATGAGGCATTGGCAATTGCCTCAAACATGCC AAAGTTAAAGCGTTTGGGATTGACCTACAATCTGATGACCAATACGGGCATTCTTCAAATTCTATCAAGTTGTCATGAGC TTGAACATTTGGACCTGAGGGGTTGCTCGGGTGTTAATATTGGCGATATCTTTGTCAATGAGAATCATCCAAGGCTCCAG GTTCTAGGGCCTCATGTGGAAGATATCGACATGGGGGATGATGATGAAGAGGCCTCTGATGACTCGGAATTGGAACATCT TATCATTGATCTAGAGGATTGGGCTGTATACTCTGATGGAGAGCTTCAAGGTGAAGAAGCTTCGGAGACTAGTGATGATG AAGAAAGTTAG
Protein sequence (LotjaGi1g1v0143100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASDFRPWDELFITDAIGDIFSRLSFEEKMNVIPLVCKSCHQGAKRPYHWQEIEIEDWSSRHEPDQIDRMVEKMVMISNG SLKKFCVSGVQSQEVLMLIAENAGSLQTLGLPRSNLSDSMMEDFSSKLKLKTFLDVSYCIRIGSQALETIGKNCKQLEVL RRNMHPSDTFGKPLNDDEALAIASNMPKLKRLGLTYNLMTNTGILQILSSCHELEHLDLRGCSGVNIGDIFVNENHPRLQ VLGPHVEDIDMGDDDEEASDDSELEHLIIDLEDWAVYSDGELQGEEASETSDDEES
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 271 | 269 | 7.4E-77 | – | |
| PANTHER | 3 | 271 | 269 | 7.4E-77 | – | |
| Gene3D | 14 | 271 | 258 | 1.2E-29 | ||
| SUPERFAMILY | 73 | 242 | 170 | 1.45E-21 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0143100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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