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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0146000 |
| Transcript ID | LotjaGi1g1v0146000.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Synaptonemal complex protein 1; TAIR: AT1G22260.3 Myosin heavy chain-related protein; Swiss-Prot: sp|Q9LME2|SYCP1_ARATH Synaptonemal complex protein 1; TrEMBL-Plants: tr|K7LWZ4|K7LWZ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0146000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:24707396..24711916) extracted from Lotus japonicus Gifu genome v1.2.
GAACACTAAGCTGAAGAAATCGTTGGAGAATGTGCACGCATTGGAGGAGAAATTGCAGAATGCGTTTAACGAAAACGCGA AGCTCAAGGTGAAGCAGAAGGAAGATGAGAAACTCTGGAAAGGACTGGAATCGAAGTTCTCGTCTACGAAGACTTTGTGT GGTCAACTTACTGAGACTTTGCAACAGTTGGCTGGTCTGGTTCAGGATGGTAGGGATATTCAATTTTCCTGTGTTTATCA TATTACTTTTACCGTTTTGTTTCGAATTTATGTCAATTGTTTCTTGTTTGGTGATATAGCTGAGAAAGATAAGGAAATGT TGGAAAAGAAACTGTCTTCAAGTTCAGAAGCTCTTGATGATTTGAATAAACAGATGGAAGGATTGTCTTTGAAACTAGAT TCTGCACAGGAAACAATTAAAACTCGTACGTGCTTTGTTAGTTTAAAACTTGGTGAAAACTTGGTTGTCTGATTATGCTT CATTGTGTAATATGATTTTATCCTTATTATATAGGTGATTATGAGCTAGAGAAGCTCAAATTTTCTGCAGAAGAAAGAGA GAAGTTTCATACAGATGAACAGTGCAGAGCTGCCAATGTTATACAAGAGAAGGGTGAGATTTAGTTGCAAATGACAATTA CTGCAGATTTATTTGGCATGTGGTGAATGTTTTATCTCAAGGATATTAGAATGTAGAAATGAATGATAGCTAAGTGGTTT CTGATGATCGTGATCGTTAACAAACATTTTCACTAGTGTCATATGTTAAATTTAATTGCATAGGTTTTCGAGTTCAAGTT AATGGTAGTATATATATTGTTTAGTCAATTTAACTTCAGTGCTTCGTTAGGGTTTCTGTTGTTCATTGTTTATGGTCTAT TATATTATGTAGTATTTATGCAGGGTTTTGTCTTTAGTGGATTTTATTTCTTGGTCTGGTTATTGTCACTTATGTAGCTA ATCTGAGGTTCCATTATGGAACTCTAACAATCATCGGTAACAGCACAGGCAAAAGGTAGTGGTAATATCCCTTAGTCTGC TGCATTTCTAGCCCAGGCACTCATGTAGTTGGCGGCATGTTAGAGTTATAAAAGGGAAAAAAGAAATCTATTCATGCATA GTTAAGGTGAAGGCACTTGCTTTTGGAGGTGATAATAAGCTGAGAGGGTTGACTTAAACTGAAGGCTAGACTAAGAAGAC GCTGATTATGTTTAAATTAACATTATGCTGTTTTGTTATGGAAGATCCTCTACTTAGAAGTTCTACATCTATAATAAATA TCATGGACTAGGATAACACTGAGTGGCTTTCTTCTCATGCCCCAGTGGGTTTAGCACTGTCTCTTTCTAGCACATCAAAA TCAAACCAATATATATTTTAGATTATTGAGTCTATTTTTCTTTTTCTTCTTTCCCTACTTCAATTCTAATGTTTTCAACA ACTGAATATCAATTATCCTGTACGTGCTACTAGTTTGAATTTTTCAATTTGTTTGCAGATACTAAAATAAAAAATTTAGA AGAAATTATAACAGCTGGTAGATTGGATACAGAGAACTTGAACACAAAGATAAGAGAGGTTCAACTTCAGTTAAAAGTCA AAGAAGATGAAATTATGCATCATTTAACCAGTCTGGAGACGTTGGAGAAAGAGAAGAGTGATCTTCAACTGTGTAATGTT CAGCTTACTAAAAAGCTTGACATGTCACTTCAGGAAATAAAAAACCTTGAAAGAGCACATCAGGTGTTGACTGAACACTT GTTAAATTTAGACAAAGAAAGCTTGAACCTTTGGAGCAAGTTTGATGAAATGAACTCTCTCTATGCTTCTTGCTTTGAGT TGGTCCAGCGGGAGAGAGAAACTTTCTCTAAGCATGCTCAAAACCAGTATGGTGAGCTTAATCATAGATTCTTGAGCTTG TCATCAGAAAAGGATGAAATTCAAATGATAAATCACGAGTTAAGAAATAGTGTAAATGAACTTCAGAAAGTCCACAACTC TACTGTAGTCCAACATAAGGAGGACTGTCGATTAGCAGCTGAGAGAATTCAGCATTTGGAGTCAGAGGCTGAAACTTTAA TCTCTAAAAAGGCAGAAGCTGATGTCATAATTTCCAAATTAGAGGGGAAAGCTGACACTCTGTTAGAAAACTCTAGGTCA TCAGAGAACCAAATGGTATGACCATGAATCTGCTTTAGTTTATAGTCTATTAACATATATTTTCTTGTTCTTAATCAAGG TAGCTAATTCTTTGCAGCAAGGTTTGCTTCTGAAAGTTTCAGCATTAGAGAATGAAAGCAAAGAAAATATGGAACGGCTG GAAGCAGAGATATTGAAGAAGTCAGAGGAAATAGATACTTTGCAAAAGGAGATAATAAAACTCGAGCAGCATGCAGATTC TGTTGATAAAGAAGTCACCCAGCTGCATAACACATTAGAGGAAAAAGAGCAGTGTATATTGCAGAATATGCAACAGGAAA AGAAGCTGGGAGACCAGCTTATTGAGGTTTTGAAGCAAATATATAGTACATACTTCATATTCCTAAATGGTTTGTGTAAT ATTTATGTCTTTTGCACTCCTTTCAGAATCAATCATTATTGACTGCTGTTGAGAGTAAACTTTCTGAAGCTAGAAAGCAA TATGATCAAATGGTGGAAAATAAGCAGTTGGAATTGTCCAAGCATTTAAAAGAAATATCTCAGAGAAACGATCAGGTGTT ATATATAACTGGTTACATACTGTAGGTTCTTGATTTATGGTGCAATAACATCACATGACAGTTGTAGTATTTGAACAGGC TATTAATGACATTAGGAGGAAGTATGAGTTGGAGAAGATGGAAATTGCCAACATGGAAAAAGACAAGGTTTTATATGATA TGTCAGTCTTTGAAGTACATCATTATCATTAACAAATTTCTGACCTATTTAAACCATCAGGCGGACAAGGCTATTGCAGA AATTGAGGCAAGGTGTAACAAACAACTTGAAGAATGCAAAGAAGAATCAAGGCAGCACTTGATGCGCATTCAAGAAGAAC AAACTCAGCTGGTTTGCACAAAAGAGACATGAATTTGAAATTATAGACTACTTAGAAATATTTTGCTATTGCATCCACTA TTTCATGGTATTATAAGTGGTCTGATTTGTCCTTTTTAGTATTTTATACTACTTTATGCACTATTTCCTTCAAATAGGCC TTGCTGCTTTTAAAATTTGTTACCTTGTGATTAGTAACTACACTATATTTCTGTTTCATAAATATATCAAAATGTTATGA TATATTAAATTAATTTAAGCACATTCAAGTGTGTCTTTAGCTATTATAATTCTATGCTCTTAGTTGGTGGGTATATGCCT CTGAGTTGTGAGAATGTTATTGTATAACTGGTTTTCTTCTGAGAAATTCACTCAACATTAAGTTGAAAAAGGTCCAGCCA CTTGGTCGGTTGATTTCTGCTCTACGTACAGGTTACGCAACTGCAGGAGGAGCACAACAAGAGACAACTAAGCCTGATAG CCGAGCACAATGAACAGCTAAAGCGTACCCAACTTCAAGCTGAAAATGAACTGAGAGAGGTGCAATACACACACAGACAC ACAACACTTAGGTCTGTGATTCGACTAGTGTATGAAATTTCTTCCCCTGACGATACTGTGATCTATGTAGAAAGCAATGT TCCTAAGGAGTGATCATGAAGCTCAGATGAAAGCATTGAAGTGTGAGCTTGAAGACGAGTGTCGGAAGCTTGAAGAGGAG TTGCATCTTCAGAAATCAAAAGTATGGAATACCTGATATGATAAATTATTTTCATCACATAACCTATAACGCCTTATGGA ACATTTTCAGGAAGACAGGCAAAGGGCTTTGTTGCAGTTGCAGTGGAAAGTGATGAGTGACAAGCCAAAAGAGGATCAAG AAGTGAATTCAAAACAGGTTGACACTTTTTACCAATCTCTTTGTTCGCATGTGTTTCGGATCTCATATATGCCCATATTA ACTATTTTAAATAGTCTGTATATTTTATATGTTTGTCTTGCAACCTAAAACTATTAGTGAAAATATCCATATGAATATAT GATGACAATCTAGGAGATAGGTGTTAGAACTTAGAATACATTAGCCGGAGTTCAGTTTGTTCAAATTGAATCAACGAATT TCAATTAAATTTGTAAAACTAGGATAATGCTATTTTTCATGTACAGGATTACTCCATCTCCTCAATTAAGAGAAAGAGTT CTTATGCTGGCAAAATAAATCAGCATGACCCAGTAAGAACGGAAATTGAAATGATATTTCACTCTCCCTCCTTCGTAACA TGTTTACATTATGTTCTCACCAAGTCGCCTGATTTTTTTTTTATTTCCCTCCTTCGTAGGACTCTCCTTGCTTTGAAGCA ACTGAACCACAAGTGCCAAAATTGGTGAAGAAAGTGGAGAACGTAAAAACAGGAACTGCAATGAATATTCCCAAGCATCA TACAAAGGTCAATTGATTCTCTTATGGCCAAGAGGAGGAAC
CDS sequence (LotjaGi1g1v0146000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGGAAAAGAAACTGTCTTCAAGTTCAGAAGCTCTTGATGATTTGAATAAACAGATGGAAGGATTGTCTTTGAAACT AGATTCTGCACAGGAAACAATTAAAACTCGTGATTATGAGCTAGAGAAGCTCAAATTTTCTGCAGAAGAAAGAGAGAAGT TTCATACAGATGAACAGTGCAGAGCTGCCAATGTTATACAAGAGAAGGATACTAAAATAAAAAATTTAGAAGAAATTATA ACAGCTGGTAGATTGGATACAGAGAACTTGAACACAAAGATAAGAGAGGTTCAACTTCAGTTAAAAGTCAAAGAAGATGA AATTATGCATCATTTAACCAGTCTGGAGACGTTGGAGAAAGAGAAGAGTGATCTTCAACTGTGTAATGTTCAGCTTACTA AAAAGCTTGACATGTCACTTCAGGAAATAAAAAACCTTGAAAGAGCACATCAGGTGTTGACTGAACACTTGTTAAATTTA GACAAAGAAAGCTTGAACCTTTGGAGCAAGTTTGATGAAATGAACTCTCTCTATGCTTCTTGCTTTGAGTTGGTCCAGCG GGAGAGAGAAACTTTCTCTAAGCATGCTCAAAACCAGTATGGTGAGCTTAATCATAGATTCTTGAGCTTGTCATCAGAAA AGGATGAAATTCAAATGATAAATCACGAGTTAAGAAATAGTGTAAATGAACTTCAGAAAGTCCACAACTCTACTGTAGTC CAACATAAGGAGGACTGTCGATTAGCAGCTGAGAGAATTCAGCATTTGGAGTCAGAGGCTGAAACTTTAATCTCTAAAAA GGCAGAAGCTGATGTCATAATTTCCAAATTAGAGGGGAAAGCTGACACTCTGTTAGAAAACTCTAGGTCATCAGAGAACC AAATGCAAGGTTTGCTTCTGAAAGTTTCAGCATTAGAGAATGAAAGCAAAGAAAATATGGAACGGCTGGAAGCAGAGATA TTGAAGAAGTCAGAGGAAATAGATACTTTGCAAAAGGAGATAATAAAACTCGAGCAGCATGCAGATTCTGTTGATAAAGA AGTCACCCAGCTGCATAACACATTAGAGGAAAAAGAGCAGTGTATATTGCAGAATATGCAACAGGAAAAGAAGCTGGGAG ACCAGCTTATTGAGAATCAATCATTATTGACTGCTGTTGAGAGTAAACTTTCTGAAGCTAGAAAGCAATATGATCAAATG GTGGAAAATAAGCAGTTGGAATTGTCCAAGCATTTAAAAGAAATATCTCAGAGAAACGATCAGGCTATTAATGACATTAG GAGGAAGTATGAGTTGGAGAAGATGGAAATTGCCAACATGGAAAAAGACAAGGCGGACAAGGCTATTGCAGAAATTGAGG CAAGGTGTAACAAACAACTTGAAGAATGCAAAGAAGAATCAAGGCAGCACTTGATGCGCATTCAAGAAGAACAAACTCAG CTGGTTACGCAACTGCAGGAGGAGCACAACAAGAGACAACTAAGCCTGATAGCCGAGCACAATGAACAGCTAAAGCGTAC CCAACTTCAAGCTGAAAATGAACTGAGAGAGAAAGCAATGTTCCTAAGGAGTGATCATGAAGCTCAGATGAAAGCATTGA AGTGTGAGCTTGAAGACGAGTGTCGGAAGCTTGAAGAGGAGTTGCATCTTCAGAAATCAAAAGAAGACAGGCAAAGGGCT TTGTTGCAGTTGCAGTGGAAAGTGATGAGTGACAAGCCAAAAGAGGATCAAGAAGTGAATTCAAAACAGGACTCTCCTTG CTTTGAAGCAACTGAACCACAAGTGCCAAAATTGGTGAAGAAAGTGGAGAACGTAAAAACAGGAACTGCAATGAATATTC CCAAGCATCATACAAAGGTCAATTGA
Protein sequence (LotjaGi1g1v0146000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLEKKLSSSSEALDDLNKQMEGLSLKLDSAQETIKTRDYELEKLKFSAEEREKFHTDEQCRAANVIQEKDTKIKNLEEII TAGRLDTENLNTKIREVQLQLKVKEDEIMHHLTSLETLEKEKSDLQLCNVQLTKKLDMSLQEIKNLERAHQVLTEHLLNL DKESLNLWSKFDEMNSLYASCFELVQRERETFSKHAQNQYGELNHRFLSLSSEKDEIQMINHELRNSVNELQKVHNSTVV QHKEDCRLAAERIQHLESEAETLISKKAEADVIISKLEGKADTLLENSRSSENQMQGLLLKVSALENESKENMERLEAEI LKKSEEIDTLQKEIIKLEQHADSVDKEVTQLHNTLEEKEQCILQNMQQEKKLGDQLIENQSLLTAVESKLSEARKQYDQM VENKQLELSKHLKEISQRNDQAINDIRRKYELEKMEIANMEKDKADKAIAEIEARCNKQLEECKEESRQHLMRIQEEQTQ LVTQLQEEHNKRQLSLIAEHNEQLKRTQLQAENELREKAMFLRSDHEAQMKALKCELEDECRKLEEELHLQKSKEDRQRA LLQLQWKVMSDKPKEDQEVNSKQDSPCFEATEPQVPKLVKKVENVKTGTAMNIPKHHTKVN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 620 | 619 | 2.1E-226 | – | |
| PANTHER | 2 | 620 | 619 | 2.1E-226 | – | |
| Coils | 6 | 33 | 28 | - | – | |
| Coils | 87 | 163 | 77 | - | – | |
| Coils | 239 | 266 | 28 | - | – | |
| Coils | 274 | 347 | 74 | - | – | |
| Coils | 383 | 403 | 21 | - | – | |
| Coils | 423 | 480 | 58 | - | – | |
| Coils | 497 | 517 | 21 | - | – | |
| Coils | 523 | 543 | 21 | - | – | |
| MobiDBLite | 571 | 595 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0146000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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