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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0146100 |
| Transcript ID | LotjaGi1g1v0146100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | E3 ubiquitin-protein ligase; TAIR: AT1G78170.1 E3 ubiquitin-protein ligase; Swiss-Prot: sp|A3LQX9|RPC3_PICST DNA-directed RNA polymerase III subunit RPC3; TrEMBL-Plants: tr|A0A151TZW2|A0A151TZW2_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0146100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:24728709..24730016) extracted from Lotus japonicus Gifu genome v1.2.
TTTGGAACTTCATGTTTTGCCTCCTACTATATAACCACCTCAAACTCTAGACATAATACTCCCAACTACTATATTCAAAG AGAGTTGAGAAACCACTCTTCAACATTGAAGCCATGGTGTCCCTTCACAAAGCTTTGACAGAGAGCCCAAAAACACAAGC TTCTATTGCAGAATTTCAAGCTTTACCAAAGAAGAGAAGCTGGGAAGATACACTCACCAAAGAATTCTTCAAAGATCACA CTGATGCAGAGAAAAGTAAACCCATCTTTGACATAGAGCTACACCTCAAGACACCATTGCCTTCAGATAAATGGCAACAA TATCTCAGTATTCAGGTATTATACATAAATATATGCTGCCAAACTTAAGGTGTGTTACCTTTGATTCTTATTAGTTTATC TAATGTTTCGTCTTTTTCATGCAGTCAGGGCAGATACACTTCTGTAACACAAGGATGGATATGAAAACACCAGACTCTCA GAGTCAATGCGGACCACAATTTAAAACCCTGCCTGAGTATGAAGAGGCATCTCTTGGTCAAATGAGCTTAGACCTTGAGC TGAACTTGACATGTGAATCAGTGAAGAAGATCAGGAAAGAAGACAGCGATGACATGAGTGAGAAGAAGAAGAATTCTGGT TCCCTCTTGATTGAATCAAGCAATAACAAAAAGGATTCATGTGTTTTAACTCAAACTCCATCATGGTTATCATCAGAAGG TGATGATCACAATGAGATGATCGCAGCAGTTTGCATGAGGTGTCACTTGTTGGTGATGCTTTGCAAATCATCTCCTTCAT GCCCAAACTGCAAATTCATGCACCCACCAGATCAGAGCCCTTCACAGTTCTTGAAGAGAAGAAGGTTCAGCCTCTTGTGC TGATCAGCAACTAGCAGAAACTTATTCAATAATTCTAAGCTTTGTCTTTTAATTCCCTTATGAATAGACTAAGTTTCTCT TTATATTGTAGCTATATGTTCCAAACAAAGGGTGGTGTTTATTCTACTACCTCTAAATTAGTGGTAATTTGACTATTAGA ATGAGTGCCAATATTGGTGTAACTAACCTAGTGTGTGATGATCATATTTTTGTACAAATTTGAATTAGAGTGTTCTTCAT TATCCTTAATTTATGTGTGTTGTCTATGATAGGTGAATTTGAGCAGGCTCTTTCATGATTTAAAATTAAGCAATACCACT TTCCCTGACTAGGCCTCTTAACTCAGAACTGTATGTTTCTTCAAGTTGTAACAAATGTTCTCTGTATTTTGATTTCCTTT TCTAGTAATGAGAACAGAGGTTTCAACA
CDS sequence (LotjaGi1g1v0146100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGTCCCTTCACAAAGCTTTGACAGAGAGCCCAAAAACACAAGCTTCTATTGCAGAATTTCAAGCTTTACCAAAGAA GAGAAGCTGGGAAGATACACTCACCAAAGAATTCTTCAAAGATCACACTGATGCAGAGAAAAGTAAACCCATCTTTGACA TAGAGCTACACCTCAAGACACCATTGCCTTCAGATAAATGGCAACAATATCTCAGTATTCAGTCAGGGCAGATACACTTC TGTAACACAAGGATGGATATGAAAACACCAGACTCTCAGAGTCAATGCGGACCACAATTTAAAACCCTGCCTGAGTATGA AGAGGCATCTCTTGGTCAAATGAGCTTAGACCTTGAGCTGAACTTGACATGTGAATCAGTGAAGAAGATCAGGAAAGAAG ACAGCGATGACATGAGTGAGAAGAAGAAGAATTCTGGTTCCCTCTTGATTGAATCAAGCAATAACAAAAAGGATTCATGT GTTTTAACTCAAACTCCATCATGGTTATCATCAGAAGGTGATGATCACAATGAGATGATCGCAGCAGTTTGCATGAGGTG TCACTTGTTGGTGATGCTTTGCAAATCATCTCCTTCATGCCCAAACTGCAAATTCATGCACCCACCAGATCAGAGCCCTT CACAGTTCTTGAAGAGAAGAAGGTTCAGCCTCTTGTGCTGA
Protein sequence (LotjaGi1g1v0146100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVSLHKALTESPKTQASIAEFQALPKKRSWEDTLTKEFFKDHTDAEKSKPIFDIELHLKTPLPSDKWQQYLSIQSGQIHF CNTRMDMKTPDSQSQCGPQFKTLPEYEEASLGQMSLDLELNLTCESVKKIRKEDSDDMSEKKKNSGSLLIESSNNKKDSC VLTQTPSWLSSEGDDHNEMIAAVCMRCHLLVMLCKSSPSCPNCKFMHPPDQSPSQFLKRRRFSLLC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 226 | 226 | 3.6E-63 | – | |
| PANTHER | 1 | 226 | 226 | 3.6E-63 | – | |
| MobiDBLite | 131 | 150 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0146100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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