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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0146600 |
| Transcript ID | LotjaGi1g1v0146600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein; TAIR: AT4G08980.1 F-BOX WITH WD-40 2; Swiss-Prot: sp|Q9ZPE4|FBW2_ARATH F-box protein FBW2; TrEMBL-Plants: tr|A0A1J7HUY3|A0A1J7HUY3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0146600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:24928118..24930837) extracted from Lotus japonicus Gifu genome v1.2.
GCTACGTAGATACAACATCACCATCTATTTTTTCTTCTAGTGTTTTCTGCTCTACTATTTAGCTATCTTCCTCCAACATA TATAGTTTTGTTCCTCTTTCAAGTGATTTCATTTGACGCTTTGAGTTGGTGTGTATTGGTTGATTTGGGTCTTTATTCTT TTAGCCTTTTTACCCTTTTTCGTCTAACATATGTCTCTCATCTTTCTCTCTATTCATATTGCAGATTACTAGTTAAATTC TTGCATAATTTGGATCCAGGAAGGTTCACTAGGCACAGCCCAAAAATTCCCTCTGGTAAACTTCTACTCTTTTGGTTGTA TGTGAGTAATTTATGTTTTTTTTCTTTCATTCTGTCTGGTTTTCTACGAAATTAAGAAAGAAAGTGAAATGGATATTGTA ATCGGAGAAATATTTTTGCGTTATGGGTTTTCCAAATTGAAACTGAAGCTTCATTTCTTTTCAAAATTACCTGGAATGTG TGATCCATATGTCAATTGCTTGGAATGAATCTGTGTTTGCATTCTCCCATGCTTCAAGTAGATATGTTTATATATGAATG ATCTAATAATTTTATATCTACAACCTCAAATCTTGAATTTGATTGTGTCTTATACATATTTCATGTTTAATTAAATTGCC CCTCCTCAACCTTGTTAAAAAGAAGGACGTTTTTTAGTTGTTTATAGAGTGTATTATCGAAACTTTGAATATTTAATTCT GGTGATCATTCAATGTGACACATGTTGTTTCTCTCTAGTTCAGGTCCAAGAAGGTTCATTAGGCACAGCCCCATCCTCTG GTAAATTTCCACTCATTTTGGTTGTATGTGAGTAATTTTTGTTTTTTGTCATTCATTCTATATAGTTTTGTTGGAAATTG AAATTAGAAACGGAGGGGTAAATGGATCTTGTAATCGGAGAAATTTTTTGTGTCATGGGTTTTCCAAATTGAAATTGAAG CTTCATTTTTGTTTACCATTTTGAATTCGGCATTTTTTCTTGTAAAGAAATGACCTAAAATGTTTGATCCATATGTCAAT GACTTGGAATGCATGCGTGTTTGCATTCTCCCAAGCTTCCAATAGTGTATATGAATAATCTAACATTTTTATACTTCCAA ACTCAAATCTTGAATTTGATCATGTCTAATATATTTCATGTTTAATTAAATGTCCCATCCTCAACCTTGTTGAAAGAAAC ACATTTTTTAGTTGTTTATAGAGTGTGTTATTGAATCTTTTAAGTCTTGTGGCCATCCAATGTGATACATGTTGTTTCTC TATGATTCTTATAATGGGTAGATTTGTATTAAGTTCTTTAATTTGTCCTAACAAGAAACGCGACATTGCACAATTATCTT CTTTTGTAGGCTCTATGGAAATGACATCTGATTTTCGTCCTTGGGATGAGTTATTTATAACAGACGCTTTTGGAAATATC TTTTCAAGGCTTTCTTTCGAAGAAAAAATGAATGTGATCCCCTTGGTATTTAAATCATGGCACCAAGGAGCAAAGAGACC ATGCCATTGGCAAGAGATAGAAATTGAGGATTGGAGTAGCAGTCATGAGCCTGACCAAATTGATCGGATGGTTGAAAATA TGCTTAGGATAAGCAATGGATCCTTAAAAAAGTTTTGTGTTTCTGGAGTTCAGAATCAGAGAGTTTTGATGTTGATCGCG GAAAAGTAAGTATATTTGCACCGTTTGAACGAAATCTTCACAGTACATACAGTGATAATTATTATGTTTATGGATTAAAG TAAAATATAGATTAAAATTGATTACCATTTTTGGAAAACATTCTACATTTGATTTTCTAAATCCAAAATCAATTATGGGG ATAAACTTCTCTAAGTAGCTTCTGGATGTCGTAATTGATTATGAGAAAAAAATAAGCTCTTGTTTTATTCATATTTTCAC TGTTATATTAATTATAAGAAACTTATATTTGTGTTCAAAATTAGTTAAGGTGGTATTTAGGTGTGATTTTGGCTAATTCA ACATTTTGCTTATGTGTGTGTTTTAACTCTTTTGGAAGTGCTGGATCCCTCCAAACTCTAGGGCTGCCAAGAAGCAACCT AAGTAATTCTATAATGGAAGAATTTACTTCGAAGCTCAAATTGATAACTTCCTTAGATGTGAGCTATTGTATCCAAATTG GCTCCCAAGCGCTGGAGACCATTGGCAAGAATTGCAAGCAGCTCGAAGTGTTGCGACGGAACATGCACCCAAATGATACA TTCGGCAAGCCCTTGAAAGATGATGAGGCATTGGCAATTGCCTCAAACATGCCAAAGATAAAGCGATTAGAGATGACCTA CAATCTGATGACCAATACAGGCATTCTTCAAATTCTGTCAGGCTGTCATGAGCTAGAACATTTGGACCTCAGGGGTTGCT CAGGTGTCAATATTGGCGATATCTTTGTCAATGAGAATCATCCAAGGCTCCAGGTTCTAGGGCCTCACGTGGTAGATATC TACATGGGGGATGATGATGAAGAGGCCTCTGATGCCTCAGAATTGGAAGATCTTAACACTCATCTGGAGGATTTTGCTGT ATACTCTGATGGAGAGCTTCAAGTTGAAGAAGGTTGGGGGTCTAACGAAGGACCTGGAGGTTCTAGATCTGATGAGTCTT CTTCATCTTCATAAACCCTAGTATTCCTTGTGAATGGCTAGATTTTAATTTGCATCTGGATGTTATGCACAAACGTTTCT
CDS sequence (LotjaGi1g1v0146600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAATGACATCTGATTTTCGTCCTTGGGATGAGTTATTTATAACAGACGCTTTTGGAAATATCTTTTCAAGGCTTTC TTTCGAAGAAAAAATGAATGTGATCCCCTTGGTATTTAAATCATGGCACCAAGGAGCAAAGAGACCATGCCATTGGCAAG AGATAGAAATTGAGGATTGGAGTAGCAGTCATGAGCCTGACCAAATTGATCGGATGGTTGAAAATATGCTTAGGATAAGC AATGGATCCTTAAAAAAGTTTTGTGTTTCTGGAGTTCAGAATCAGAGAGTTTTGATGTTGATCGCGGAAAATGCTGGATC CCTCCAAACTCTAGGGCTGCCAAGAAGCAACCTAAGTAATTCTATAATGGAAGAATTTACTTCGAAGCTCAAATTGATAA CTTCCTTAGATGTGAGCTATTGTATCCAAATTGGCTCCCAAGCGCTGGAGACCATTGGCAAGAATTGCAAGCAGCTCGAA GTGTTGCGACGGAACATGCACCCAAATGATACATTCGGCAAGCCCTTGAAAGATGATGAGGCATTGGCAATTGCCTCAAA CATGCCAAAGATAAAGCGATTAGAGATGACCTACAATCTGATGACCAATACAGGCATTCTTCAAATTCTGTCAGGCTGTC ATGAGCTAGAACATTTGGACCTCAGGGGTTGCTCAGGTGTCAATATTGGCGATATCTTTGTCAATGAGAATCATCCAAGG CTCCAGGTTCTAGGGCCTCACGTGGTAGATATCTACATGGGGGATGATGATGAAGAGGCCTCTGATGCCTCAGAATTGGA AGATCTTAACACTCATCTGGAGGATTTTGCTGTATACTCTGATGGAGAGCTTCAAGTTGAAGAAGGTTGGGGGTCTAACG AAGGACCTGGAGGTTCTAGATCTGATGAGTCTTCTTCATCTTCATAA
Protein sequence (LotjaGi1g1v0146600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEMTSDFRPWDELFITDAFGNIFSRLSFEEKMNVIPLVFKSWHQGAKRPCHWQEIEIEDWSSSHEPDQIDRMVENMLRIS NGSLKKFCVSGVQNQRVLMLIAENAGSLQTLGLPRSNLSNSIMEEFTSKLKLITSLDVSYCIQIGSQALETIGKNCKQLE VLRRNMHPNDTFGKPLKDDEALAIASNMPKIKRLEMTYNLMTNTGILQILSGCHELEHLDLRGCSGVNIGDIFVNENHPR LQVLGPHVVDIYMGDDDEEASDASELEDLNTHLEDFAVYSDGELQVEEGWGSNEGPGGSRSDESSSSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 267 | 264 | 1.6E-78 | – | |
| PANTHER | 4 | 267 | 264 | 1.6E-78 | – | |
| Gene3D | 16 | 275 | 260 | 3.7E-29 | ||
| SUPERFAMILY | 70 | 244 | 175 | 2.75E-22 | – | |
| MobiDBLite | 284 | 308 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0146600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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