Transcript — View — Lotus Base

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LotjaGi1g1v0150100.1

Overview

Field	Value
Gene ID	LotjaGi1g1v0150100
Transcript ID	LotjaGi1g1v0150100.1
Lotus japonicus genome version	Gifu v1.2
Description	Glycosyltransferase; TAIR: AT3G21560.1 UDP-Glycosyltransferase superfamily protein; Swiss-Prot: sp\|Q9MB73\|LGT_CITUN Limonoid UDP-glucosyltransferase; TrEMBL-Plants: tr\|A0A1J7FST9\|A0A1J7FST9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0150100
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr1:25792885..25794891) extracted from Lotus japonicus Gifu genome v1.2.

GCCAAACAAAGTTATTGTCTTATTGACAATATGAAGCTAAAGGTGATTTTACCAACATTTCCATACAGTAATCTAGACAA TTACTACTACATTTCTTTTTTTACATTTAGAAATATAAACTAATTAAATATTCCACTTAATGTCCCTCTATTTAATGATA GACACAGAACTCAAAATCAATCAAACAATAGTAAAGCAGAAAACAATAGGAAAGCAGAAAGCAATGGTGTCCGAATCCCC CATTCATGTGCTCCTAGTTTCATTTCCAGCACAAGGACATATAAGCCCTCTCCTCCGACTAGGCAAACACCTCGCCGCAA AGGGCTTATTCGTCACTTTCTCCACCACCCGCCAAAAGGGCGAGGAGATGGTGGTGGCAGCAGCAGCAACCACCACCACC ACCACCGCCACCGCCAACGGAACATCATCACCACCACCACCCACACCAATCGGCGACGGTTTCCTCCAGTTCGACTTATA CGACGACGGTTTACCAGAAGATCATCCCACAAGGAACGACCTTAAAGATTACTCACTTCAGATTGCGGAATATGGCAAGA AAATTCTACCCCAGTTGATCAAAAAACATGCAGATGCAAATCGTCCTGTCTCATGCATCATCAACAACCCTTTTGTGTCA TGGGTTTGTGAGGTAGCCGCTGAATTGGATATCCCTTGTGCTATGTATTGGATTCATGCTTGTGCTACCTTTGTTGCTTG TCATCACTATTTTCAAAAATTAACACCTTTTCCTACAGAAACTGAGCCTTACCTTGATGTTCAATTGCCTACTTTACACC TTAAATACAATGAAGTCCCTGGATTTCTCCACCCTTTTAGTCCAGTCCCTTTTGTGCAAACCTTGGTGACCCAACAATTT GACCAATTGTCTAAAATCTTCTGCATAATCATGGACACATTTGAGGAGCTAGAGCAAGATTCTTTCAACTATTTGTCTTC AGATTTAAATATTTTGATTAGGCCTGTTGGGCCTTTGTACAAGATGCCATTAGGAGCAGCAGCAGCAGAGAATTCTAATA GTACTTCCAAAAAAGCTGATGATTCCATTATTGAGTGGTTGAATTCAAAGCAAAAATCATCTGTGGTTTACATTTGTTTT GGCACTATTCTTCCACTACCTATTGAACAGTTAGGTGAAATTGCTTATGCTCTGTTGGAATCTGAAGTCTCATTCCTCTG GGTGTTAAGGGAATCTCACAAAGAAGAAGCTTTGAAAACTGGTGCTTTCCCTGATGGGTTTTTCGAGAAAATCAGTGAGA GGGGCAAAGTGGTAAAATGGTGCCCACAAGAGAAAGTTCTAGCCCACTCTTCAGTGGCATGCTACTTCACTCACTGTGGC TGGAACTCGACGTTGGAGACGGTGAGTTCAGGGGTACCCATGTTGACATTCTCACAAATCAGTGACCAGATGACCAATGC AAAGTTGATTGTGGATGTGTTTAAGGTGGGGATTCGAGTGAGTCATCATGGGTTGTCTGAGAAGAAATTGGTGAAGAGTG ATGAGATAAAGAGGTGTTTAGTGGAGGCTATGGTGGGGCCGAAAGCGGAGGAGCTGAAGCGGAATGCGTTGAAGTGGAAG GATGCGGCGGCGGCCGCCAGGGCTCGCGGTGGCTCCTCCGACAGGAACCTTGATGCGTTTGTCGAGGATATTAAGAAGGT TGCCGTGAAAAAATTTGTCGGTAATTAATTAATGCAACCGCTTGTGTTCTAAATTTCCTATAACGTTTTGTCAATTCAAG AATTAATTTCGTACGCGATGTTTCTTTCACGGTACTTGTCTACTGTCCTCTTTTTTGCCAATTTTTTATTACTTTTAGGT AATTTGTAGAATTGTACTCTACCATCCGTTTTAATATCTCCGTTTGCTATTTTTATCGGATGTTTCTTGCTTGCTTTGTT TTTACTAGGAATAAATATAATTTTAATCTTTCTAGAAGTGAATTATTTTATCCTCTTTCTAATTTTCTCATTGATTTTAG TCTTCAA

Download Genomic Sequence

CDS sequence (LotjaGi1g1v0150100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCCCTCTATTTAATGATAGACACAGAACTCAAAATCAATCAAACAATAGTAAAGCAGAAAACAATAGGAAAGCAGAA AGCAATGGTGTCCGAATCCCCCATTCATGTGCTCCTAGTTTCATTTCCAGCACAAGGACATATAAGCCCTCTCCTCCGAC TAGGCAAACACCTCGCCGCAAAGGGCTTATTCGTCACTTTCTCCACCACCCGCCAAAAGGGCGAGGAGATGGTGGTGGCA GCAGCAGCAACCACCACCACCACCACCGCCACCGCCAACGGAACATCATCACCACCACCACCCACACCAATCGGCGACGG TTTCCTCCAGTTCGACTTATACGACGACGGTTTACCAGAAGATCATCCCACAAGGAACGACCTTAAAGATTACTCACTTC AGATTGCGGAATATGGCAAGAAAATTCTACCCCAGTTGATCAAAAAACATGCAGATGCAAATCGTCCTGTCTCATGCATC ATCAACAACCCTTTTGTGTCATGGGTTTGTGAGGTAGCCGCTGAATTGGATATCCCTTGTGCTATGTATTGGATTCATGC TTGTGCTACCTTTGTTGCTTGTCATCACTATTTTCAAAAATTAACACCTTTTCCTACAGAAACTGAGCCTTACCTTGATG TTCAATTGCCTACTTTACACCTTAAATACAATGAAGTCCCTGGATTTCTCCACCCTTTTAGTCCAGTCCCTTTTGTGCAA ACCTTGGTGACCCAACAATTTGACCAATTGTCTAAAATCTTCTGCATAATCATGGACACATTTGAGGAGCTAGAGCAAGA TTCTTTCAACTATTTGTCTTCAGATTTAAATATTTTGATTAGGCCTGTTGGGCCTTTGTACAAGATGCCATTAGGAGCAG CAGCAGCAGAGAATTCTAATAGTACTTCCAAAAAAGCTGATGATTCCATTATTGAGTGGTTGAATTCAAAGCAAAAATCA TCTGTGGTTTACATTTGTTTTGGCACTATTCTTCCACTACCTATTGAACAGTTAGGTGAAATTGCTTATGCTCTGTTGGA ATCTGAAGTCTCATTCCTCTGGGTGTTAAGGGAATCTCACAAAGAAGAAGCTTTGAAAACTGGTGCTTTCCCTGATGGGT TTTTCGAGAAAATCAGTGAGAGGGGCAAAGTGGTAAAATGGTGCCCACAAGAGAAAGTTCTAGCCCACTCTTCAGTGGCA TGCTACTTCACTCACTGTGGCTGGAACTCGACGTTGGAGACGGTGAGTTCAGGGGTACCCATGTTGACATTCTCACAAAT CAGTGACCAGATGACCAATGCAAAGTTGATTGTGGATGTGTTTAAGGTGGGGATTCGAGTGAGTCATCATGGGTTGTCTG AGAAGAAATTGGTGAAGAGTGATGAGATAAAGAGGTGTTTAGTGGAGGCTATGGTGGGGCCGAAAGCGGAGGAGCTGAAG CGGAATGCGTTGAAGTGGAAGGATGCGGCGGCGGCCGCCAGGGCTCGCGGTGGCTCCTCCGACAGGAACCTTGATGCGTT TGTCGAGGATATTAAGAAGGTTGCCGTGAAAAAATTTGTCGGTAATTAA

Download CDS Sequence

Protein sequence (LotjaGi1g1v0150100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSLYLMIDTELKINQTIVKQKTIGKQKAMVSESPIHVLLVSFPAQGHISPLLRLGKHLAAKGLFVTFSTTRQKGEEMVVA AAATTTTTTATANGTSSPPPPTPIGDGFLQFDLYDDGLPEDHPTRNDLKDYSLQIAEYGKKILPQLIKKHADANRPVSCI INNPFVSWVCEVAAELDIPCAMYWIHACATFVACHHYFQKLTPFPTETEPYLDVQLPTLHLKYNEVPGFLHPFSPVPFVQ TLVTQQFDQLSKIFCIIMDTFEELEQDSFNYLSSDLNILIRPVGPLYKMPLGAAAAENSNSTSKKADDSIIEWLNSKQKS SVVYICFGTILPLPIEQLGEIAYALLESEVSFLWVLRESHKEEALKTGAFPDGFFEKISERGKVVKWCPQEKVLAHSSVA CYFTHCGWNSTLETVSSGVPMLTFSQISDQMTNAKLIVDVFKVGIRVSHHGLSEKKLVKSDEIKRCLVEAMVGPKAEELK RNALKWKDAAAAARARGGSSDRNLDAFVEDIKKVAVKKFVGN

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
SUPERFAMILY	SSF53756 View details on SSF53756 Search for proteins/transripts with this domain View external data on SSF53756	33	511	479	5.83E-106	–
CDD	cd03784 View details on cd03784 Search for proteins/transripts with this domain View external data on cd03784	36	488	453	5.60104E-76	–
Gene3D	G3DSA:3.40.50.2000 View details on G3DSA:3.40.50.2000 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.2000	41	504	464	2.3E-128	–
PANTHER	PTHR11926 View details on PTHR11926 Search for proteins/transripts with this domain View external data on PTHR11926	229	439	211	1.1E-29	–
Pfam	PF00201 View details on PF00201 Search for proteins/transripts with this domain View external data on PF00201	303	456	154	9.5E-21	IPR002213 Show description in modal box View details on IPR002213 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.40.50.2000 View details on G3DSA:3.40.50.2000 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.2000	304	492	189	2.3E-128	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	476	496	21	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0016758 View details of GO:0016758 AmiGO InterPro QuickGO	Molecular function	Transferase activity, transferring hexosyl groups	Catalysis of the transfer of a hexosyl group from one compound (donor) to another (acceptor).	Subterm of View details of GO:0016757

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0150100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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