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LotjaGi1g1v0158800.1

Overview

Field Value
Gene ID LotjaGi1g1v0158800
Transcript ID LotjaGi1g1v0158800.1
Lotus japonicus genome version Gifu v1.2
Description PLATZ transcription factor family protein; TAIR: AT4G17900.1 PLATZ transcription factor family protein; Swiss-Prot: sp|P0CB19|Y3081_ARATH Uncharacterized protein At3g50808; TrEMBL-Plants: tr|A0A0D2NS94|A0A0D2NS94_GOSRA Uncharacterized protein; Found in the gene: LotjaGi1g1v0158800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:29427610..29429079) extracted from Lotus japonicus Gifu genome v1.2.

CTTCTTTTCACTGGGTTTTGAGGTGGGAGTGAGAGTTCAGTCTACAGAAGATTTTATAAGAAATCATCATCATCATCATC AATATGGTGGTGGGTACGGCGAATATTCCATCATGGTTACAAGCTTTGCTTGATGCTTTCAGAATAAGAGAGCCATTGGC ACATTCTCCCAACTGCACTTGGAGCAAGAAATTCTTTACCGTCTTCTGCATTGACTGCTTGAAATTAGTTTGCAAGTTCT GTCAACACCACCAGCATAAAGAACACCAAGTACTTCCAGTAAGTAACATATATAATCTCATCTTTGAGTAAAATGCATGT TTCAATCAGTACTCAGTTGTGTAAATTTGTTGTGGATAAATTCTTTTGTGGTTTAAATGAACTGATTTGTGTTACAATAA TGCGTTTGAGAATGAAGTCTCAAATTGACTAAAGATATGACTGAAATAATCTTTATAAACGGTAGAACAATTTTTACTGT CAAGATTCTAACCACTCACAAATACTCATTTATGCAAATTTCATGGGTGAGTTAGATTGACTCACATTTATGTGACTCAT GGGTTGACTATGGTGGATTAAGTGGGTTAGAGTCCCATTATGCAGAAGTTCTTTTTTAACTAGTATTATTTATGTTTTTT CATGTACTTTTTCATTTTATAATCTTTTTCTTGAAATTTTATTTCTTTTAAAGATCAGAAAAGTTTTTTAATTTATGTGA GTCAACTCAACCAGTTTAACCCTCAAAACTTGAGTTGACTATTTCTTGGACTCACTTTTTGATTGAACCAGAACCTTGGT GAACTGGGTTGGCTGACTTTAAGAGACTTTTTGTGTGTTTTGTCTAAATTAGTTGTGCATTAAATTGATTCCTTTCTCTA ATTTCTATTTTTCAGTTGTACCAAGCATCAGGTCAAGATGGTTTCAAGGTGAACGAGCTGTGCAAGCTGATAGATATTGA GGATATACAACTATATACAATCAATGCAATGCAAATAGTTTATGTCAACAAGAGAAATAATAAGGATTCTAAGTCCCGTA ATAACAAAACTGGCAAAGAAGATGCCCCCAAGTGTGAAGTATGTGGCTGGGAACTCATAAAAGTTGGTAACAAGTTCTGT TCAATTGAATGCAAAGTAAGTGACTTTTTTACAGTGCATATATATACATATTTTGTTTCTTTATTTGCCACTATATCAAT CTATACTATATGAAGTTGCTGATTGAGAATTTAATTTGTTGCAGGCTGCGAGTGGCCGAAATCTCTCCTTGAAATCTGAT CAGTCTGTTTATCAAGTTAATTCAGTTTCTGTTGATCAAGTTTCTGATGATCTAGTTGAATCATGTAGGAAAAGGCAAAG AAAAGGGATGCCCACAAGAGCTCCTTTCTTTTAGATAATTCTTCTTTTTTGGGATGTTATTTTAGTTGGTTTTGGTACAT ATTACATTTTTCTAAGGAAGTGCTTTAATG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0158800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTGGTGGGTACGGCGAATATTCCATCATGGTTACAAGCTTTGCTTGATGCTTTCAGAATAAGAGAGCCATTGGCACA TTCTCCCAACTGCACTTGGAGCAAGAAATTCTTTACCGTCTTCTGCATTGACTGCTTGAAATTAGTTTGCAAGTTCTGTC AACACCACCAGCATAAAGAACACCAAGTACTTCCATTGTACCAAGCATCAGGTCAAGATGGTTTCAAGGTGAACGAGCTG TGCAAGCTGATAGATATTGAGGATATACAACTATATACAATCAATGCAATGCAAATAGTTTATGTCAACAAGAGAAATAA TAAGGATTCTAAGTCCCGTAATAACAAAACTGGCAAAGAAGATGCCCCCAAGTGTGAAGTATGTGGCTGGGAACTCATAA AAGTTGGTAACAAGTTCTGTTCAATTGAATGCAAAGCTGCGAGTGGCCGAAATCTCTCCTTGAAATCTGATCAGTCTGTT TATCAAGTTAATTCAGTTTCTGTTGATCAAGTTTCTGATGATCTAGTTGAATCATGTAGGAAAAGGCAAAGAAAAGGGAT GCCCACAAGAGCTCCTTTCTTTTAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0158800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVVGTANIPSWLQALLDAFRIREPLAHSPNCTWSKKFFTVFCIDCLKLVCKFCQHHQHKEHQVLPLYQASGQDGFKVNEL CKLIDIEDIQLYTINAMQIVYVNKRNNKDSKSRNNKTGKEDAPKCEVCGWELIKVGNKFCSIECKAASGRNLSLKSDQSV YQVNSVSVDQVSDDLVESCRKRQRKGMPTRAPFF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31065:SF39
7 193 187 2.0E-40 –
PANTHER
PTHR31065
7 193 187 2.0E-40 –
Gene3D
G3DSA:3.30.40.200
22 78 57 2.6E-5 –
SUPERFAMILY
SSF57845
29 74 46 3.82E-7 –
ProSiteProfiles
PS50119
31 66 36 9.271
IPR000315
CDD
cd00021
39 66 28 0.00131184
IPR000315
Pfam
PF04640
70 145 76 1.7E-19
IPR006734

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0158800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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