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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0166500 |
| Transcript ID | LotjaGi1g1v0166500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT1G32375.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q9LQM1|FBD39_ARATH Probable FBD-associated F-box protein At1g32375; TrEMBL-Plants: tr|V7B3U7|V7B3U7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0166500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:31627381..31630266) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGAGGAAAAGTTTAAGCCATGGGACCCACCATTACTTTTCCCTTCCCGTAGTTTTCCTTCCCTAACCAAACACATTT GGGCCCGTCCACTTTTCCTTCTAAAATTCATCCTTTCCTTTTCCTTCCTCATGTTTTCCCTAAAATCCCATTTGTTTCCA TCCACCAGCTGACCAGCCCCAAATCTAATCAAAGCTCTGCAAGAAATGGAGAATCGATTGAAGATGAATTCCTACCAGAG ACGCCGCAACCTCATGGCTGACAGAATCAGCACGTTGCCAGATCGAAGCTATCTCATAATCAACAGATCCTATAATGGCT TTTCAAAGTTTATATATAGAACCATGCGCAACAGAGATCACCACCAACCAATCACCACCTTTCGTCTCCAATGTGGCTCT TCGCATTTCAACCTTTCTGATGTCAATAGATGGGTCAACTCTGCAGTACAACGTGGACTTGAGAATCTCTACATCCAGCT GTTCTATCAAATTTTTCCAAAATTGATCAAAAGCTGCATTTTCAGCTGCAAGACTCTTGTTGTTCTCAAGTTGTTTGGGT TAAACGTGGATGTATTTTCTTTTGTTCACCTTCCTTCGCTCAAAACTTTGCAGTTGTATTGCCTTATTTTTCCAGAACCG CAATATGTTATGGAACTTCTTTCTGGGTGTCCAATTCTTGAGTATATGCATTTGAGCAGAATGCGTTATGCTGACTGTTC TAGTCCTAGTAATACCAACGTTAAAAGCTTAACTAAGTTGGTCAGTGCAGATATATCTTTCATTGGCTTTGAAATTCCTC TGAAAGTGATTTGTAATGTAGAATTTCTTCGCATTGACAAGGTTTGTTGTATATATGTGAAAGAAAAGTGTGATTACCTT GTTTGTATTTTTAGAAAATGTCACTAATGTTTGTGATTTCTATTTTTAACTGTTGCAGTACCCTTATGAAATTCCAGTTT TTCCCAATTTAACTCATCTGGAGCTCATGATGTCGGGTATTGGTATGAACTGGCATTTGGTACTTGCGATGCTCAAGAAG TGCCCAAAGCTGCAAAAGTTGTTACTTGATATGAAGGCAAGTTCTACTCATGATATGGTTTGGACTTCCCCCTTCAATGA TCCTGAGTGTCTTTCTTCACAGCTTAGGAAGTGTTCCATTACAAATTATAAAGGCACGAAAAGTGAGCTGCATTTTGCAA CATATATTATGCAGAGTTCCAGAGTTTTACAGACGATGGCCATAGACACTGCGCCATCCTCAGAACAAGGGGACAAATTT GAAATGATAAAAGAATTGTCCTTGTGCCCAAGGAGTTCCGCAATTTGTCAACTTTCATTTAAATGAAAATGAATGCCATG CTCTAGTTAGTAGCTGCAACCTGCAAGTTGTGTTTAGAAGATTGCATTTGCACTTAGTTTATCTACATGTAGTACAACTG CTACTGTTTTGAAGGGTATGGAATTTGTCTCTTGTAAATTGTGATTCAGTACTGGTATTATTCTAATTTTCAGACCAATG AACATCTTCTATTAGTAGTTCACTTGATCTTAGATATTCCTGTCATTGACTGCAGTTGTATTGGTTGAATAAATTATGCT CCATTTTCCCCTTGTAGTTACATTCTTCAGATTTAAGTGTTAACAAGCATGCAGCCTTCAACTCTTCTAGACTTGCTCAA GGTGAGAGAAGCGTGCTAGTGTCTATCAAGGTTTCATGTTGTGTATACATGATTCAGGATTCTAATGGAACTTATTTTTC AGTTTTTGACTGTGACACTGTGTCCTGTTGTAACTCTTTGTGCTTGAAACCTTATGTGACTTTCTTAACCACTTGGAAGG AGTATATGTGTGGCCCAATCTCAAACTCCCAAGTTTCTGTCACATTAGCATTCTTGTTTTTTCTGCAATTGTAAATACCA TGTACAATAGCAGATAGTGCAAGGACTACAGGTAACTGAAAATCCAGTTATAAGAGAAGTATGTTTCTTATGTGTAATGT CCTGCTGTGTCAGATGAATTCGCATGCAAGTTGGTGATGTGGATTCTAATATGGTTGTTAACTTGTTATTGATGTCGGTG TCTAACTCAACAGCAAAGAGGTGGTTGGAGAAGTTCCCAATGTTACTTTTGTTAAGACCACCAAGGTACTAGCTGGGGAG AGCATGGAGATCCTTGGAAGTTGCAGTGGTAAAGGCTAGGGCTCCTTGCTCACCTGGATTTAGATACTCAGGGACAATAG AAGAAAAGTAGAATGCTTTACCGTTGCTAGAGTTCTTGAATTGAAAAGGAGCTGGATAAAAAGTATGCCCCATATATTTA CTTGTCTCATTTGTTATCCTAAGTATTCTACTTTTCTCTAATTCTGCTACCCCATTCAAGGTTAAATTGTCCCTGCCCAC TCTCTTGAATCCAGTATATAGGAGTTGATCAGGCTTGTGGTGAAACTGGGATAAGAAGGAAAAACAACACAGGGAAGAGT TGAAGAAGGTTGACCATGAATATGAACACAAGAAGAGGAGCGAAAATAGAGAAAATCAATGACTTTGAATGTCAAGGGTT TGAGACTTGAAAATATTGGTGGGAGTGGGGAATGGAGTGGTAGTGAAATGTGCAGTGTGGAAAAAGGAAGCATTAGTTTT GCTTAGTGAAGGAGGTTGGTGAAGATGGAAGAATATTATGTTGGGGTTGGGTGACATGATGATATTGATAGGAGCCTATG TAGGAATAAACCATAAAACAAACATCTTGTTCTTATCTTTTCAAACTGAAAAGAAACATTGCAGATCTGAATTTGGCTGT TTGATCTTACTCTTTCTCCAAAAAAATTATCAGTATAGCAATGTTTAGTCTTATCATTTATTGTCCAGGGCTGAAACACA TGATGA
CDS sequence (LotjaGi1g1v0166500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAATCGATTGAAGATGAATTCCTACCAGAGACGCCGCAACCTCATGGCTGACAGAATCAGCACGTTGCCAGATCG AAGCTATCTCATAATCAACAGATCCTATAATGGCTTTTCAAAGTTTATATATAGAACCATGCGCAACAGAGATCACCACC AACCAATCACCACCTTTCGTCTCCAATGTGGCTCTTCGCATTTCAACCTTTCTGATGTCAATAGATGGGTCAACTCTGCA GTACAACGTGGACTTGAGAATCTCTACATCCAGCTGTTCTATCAAATTTTTCCAAAATTGATCAAAAGCTGCATTTTCAG CTGCAAGACTCTTGTTGTTCTCAAGTTGTTTGGGTTAAACGTGGATGTATTTTCTTTTGTTCACCTTCCTTCGCTCAAAA CTTTGCAGTTGTATTGCCTTATTTTTCCAGAACCGCAATATGTTATGGAACTTCTTTCTGGGTGTCCAATTCTTGAGTAT ATGCATTTGAGCAGAATGCGTTATGCTGACTGTTCTAGTCCTAGTAATACCAACGTTAAAAGCTTAACTAAGTTGGTCAG TGCAGATATATCTTTCATTGGCTTTGAAATTCCTCTGAAAGTGATTTGTAATGTAGAATTTCTTCGCATTGACAAGTACC CTTATGAAATTCCAGTTTTTCCCAATTTAACTCATCTGGAGCTCATGATGTCGGGTATTGGTATGAACTGGCATTTGGTA CTTGCGATGCTCAAGAAGTGCCCAAAGCTGCAAAAGTTGTTACTTGATATGAAGGCAAGTTCTACTCATGATATGGTTTG GACTTCCCCCTTCAATGATCCTGAGTGTCTTTCTTCACAGCTTAGGAAGTGTTCCATTACAAATTATAAAGGCACGAAAA GTGAGCTGCATTTTGCAACATATATTATGCAGAGTTCCAGAGTTTTACAGACGATGGCCATAGACACTGCGCCATCCTCA GAACAAGGGGACAAATTTGAAATGATAAAAGAATTGTCCTTGTGCCCAAGGAGTTCCGCAATTTGTCAACTTTCATTTAA ATGA
Protein sequence (LotjaGi1g1v0166500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MENRLKMNSYQRRRNLMADRISTLPDRSYLIINRSYNGFSKFIYRTMRNRDHHQPITTFRLQCGSSHFNLSDVNRWVNSA VQRGLENLYIQLFYQIFPKLIKSCIFSCKTLVVLKLFGLNVDVFSFVHLPSLKTLQLYCLIFPEPQYVMELLSGCPILEY MHLSRMRYADCSSPSNTNVKSLTKLVSADISFIGFEIPLKVICNVEFLRIDKYPYEIPVFPNLTHLELMMSGIGMNWHLV LAMLKKCPKLQKLLLDMKASSTHDMVWTSPFNDPECLSSQLRKCSITNYKGTKSELHFATYIMQSSRVLQTMAIDTAPSS EQGDKFEMIKELSLCPRSSAICQLSFK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 18 | 318 | 301 | 1.1E-12 | ||
| PANTHER | 37 | 344 | 308 | 7.9E-61 | – | |
| PANTHER | 37 | 344 | 308 | 7.9E-61 | – | |
| SUPERFAMILY | 67 | 256 | 190 | 1.44E-13 | – | |
| Pfam | 131 | 156 | 26 | 8.7E-5 | ||
| Pfam | 274 | 314 | 41 | 7.6E-13 | ||
| SMART | 275 | 347 | 73 | 3.0E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0166500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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