Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0166800 |
| Transcript ID | LotjaGi1g1v0166800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT4G10400.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q9SV82|FBD40_ARATH FBD-associated F-box protein At4g10400; TrEMBL-Plants: tr|V7B3U7|V7B3U7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0166800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:31653102..31654712) extracted from Lotus japonicus Gifu genome v1.2.
GGAAGAAACAGTGAAATAGGAATTTCAGCCTTGGCAAGTGAGACATCTCTTAAACCCTAAAACACACCAGCCCCAAATCT AATGAAAGCTCTACGAGAAATGGAGAAGCGATTGAAGATGAACAAGTCCTTTGTCACATTCTTGTGAACCCTAGCAGAGT GAACCCTAACAATGGCTGACAGAATCAGCACATTGCCAGATGATGCACTTTGTCACATTCTCTCTTTTCGTCCAACCCAA ACCGCCATTGCCACAAGTGTTCTCTCAAAGAGGTGGAGGCCACTATGGCTTTCAGTTTCCACTCTCTTCTTTGACGATCG AAGCTATCTCATAAACAACAGAACCTATGATGGCTTTTCAAAGTTTATATATAGAACCATGCGCACCAGAGATCACCACC TTTCGTCTCCAATGTGGCTCTTCGCATTTCAACCTTTCAGATTCTGATCTCAATATATGGGTTAACGCTGCAGTACAAGG TGATGGACTCGAGAATCTCCACATCGATCTTCCCTCTACAATTGCTATACTCACCTTGAAGAGCTGCATTTTCAGCTGCA AAACTCTTGTTGTTCTCAAGTTGATTGGGTTAGAGCTGGATGCATTTTCTTTTGTTCACCTGCCTGCGCTCAAAACGTTG CATTTGGTTGAGGTCCACTTTCCGAAACCGCAATTTCTTATGGAACTTCTTTGTGGGTGTCCAATGCTTGAGTATATGCA TTTGAGAGATATTACCGTAAGCTATGATGACGATTCTACTCCTAGTAATGACAAGTTAAATAGCTTAACTAAGTTGGTCA AGGCAGATATATCTTACATTGAATCAATTATTCCTCTGAAAGTGATTTGTAATGTAGAGTTTCTTCGCATTGATGAGGTT TGTATATATGTCAAAGAAAATTGTGATTAACTCGTTTAAATTTCTAGAAAATGTCACTAATGTTTGTGATTTCTCTTTTT AAATTTTGCAGTACCTTGATGACATTCCAGTTTTCCCCAATTTAACTCATGTGGAGCTCATGTTCAGTACTGGTATGAAT TGGCATTTGGTACTTGCGATGCTCAAGAAATGCCCAAAGCTACAAAAATTATCACTTGATATGCTGGCGAGTTCTACTGA TATGGTTTGGATTTCCCCCTTTAATGTTCCTGAGTGTCTTTCTTCACAGCTTCAGAAGTGTTCCATTACTAATTATAAAG GCACCAAAAGTGAGCAGCATTTTGCAACATATATTATGCAGAACTCAGGAGTTTTACGAACAATGACCATAAGCACTGTG GCTTCCTCAAAATTACAGGACAAATTCGAAATGATAAAAGAATTGTCCTTATGCCGAAGGAGTTCTACGATCTGTGAACT TTCTTTTAGATGAAAAATTGAAAATGAATGACAAGCTCTAGTCAGTAGCTGCAAATTGTGTTTAAAAGATTGCATTTGCA CTTAGTTTATCTACATGTAGTGCAACTGCTAGTGTTTTGAAGGACATGGAATTTGTCTCTTAGTTTATCATGTATTTTCA TCATTTGTGTTTTTAATTGAATGACTAGCTCTTTTGACGTTATATATCATCTGTGCACAATTATTTGGACTTGAGTTACA CATATGTGTCC
CDS sequence (LotjaGi1g1v0166800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGCTTTTCAAAGTTTATATATAGAACCATGCGCACCAGAGATCACCACCTTTCGTCTCCAATGTGGCTCTTCGCA TTTCAACCTTTCAGATTCTGATCTCAATATATGGGTTAACGCTGCAGTACAAGGTGATGGACTCGAGAATCTCCACATCG ATCTTCCCTCTACAATTGCTATACTCACCTTGAAGAGCTGCATTTTCAGCTGCAAAACTCTTGTTGTTCTCAAGTTGATT GGGTTAGAGCTGGATGCATTTTCTTTTGTTCACCTGCCTGCGCTCAAAACGTTGCATTTGGTTGAGGTCCACTTTCCGAA ACCGCAATTTCTTATGGAACTTCTTTGTGGGTGTCCAATGCTTGAGTATATGCATTTGAGAGATATTACCGTAAGCTATG ATGACGATTCTACTCCTAGTAATGACAAGTTAAATAGCTTAACTAAGTTGGTCAAGGCAGATATATCTTACATTGAATCA ATTATTCCTCTGAAAGTGATTTGTAATGTAGAGTTTCTTCGCATTGATGAGTACCTTGATGACATTCCAGTTTTCCCCAA TTTAACTCATGTGGAGCTCATGTTCAGTACTGGTATGAATTGGCATTTGGTACTTGCGATGCTCAAGAAATGCCCAAAGC TACAAAAATTATCACTTGATATGCTGGCGAGTTCTACTGATATGGTTTGGATTTCCCCCTTTAATGTTCCTGAGTGTCTT TCTTCACAGCTTCAGAAGTGTTCCATTACTAATTATAAAGGCACCAAAAGTGAGCAGCATTTTGCAACATATATTATGCA GAACTCAGGAGTTTTACGAACAATGACCATAAGCACTGTGGCTTCCTCAAAATTACAGGACAAATTCGAAATGATAAAAG AATTGTCCTTATGCCGAAGGAGTTCTACGATCTGTGAACTTTCTTTTAGATGA
Protein sequence (LotjaGi1g1v0166800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMAFQSLYIEPCAPEITTFRLQCGSSHFNLSDSDLNIWVNAAVQGDGLENLHIDLPSTIAILTLKSCIFSCKTLVVLKLI GLELDAFSFVHLPALKTLHLVEVHFPKPQFLMELLCGCPMLEYMHLRDITVSYDDDSTPSNDKLNSLTKLVKADISYIES IIPLKVICNVEFLRIDEYLDDIPVFPNLTHVELMFSTGMNWHLVLAMLKKCPKLQKLSLDMLASSTDMVWISPFNVPECL SSQLQKCSITNYKGTKSEQHFATYIMQNSGVLRTMTISTVASSKLQDKFEMIKELSLCRRSSTICELSFR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 5 | 308 | 304 | 1.6E-13 | ||
| PANTHER | 16 | 307 | 292 | 4.8E-60 | – | |
| PANTHER | 16 | 307 | 292 | 4.8E-60 | – | |
| SUPERFAMILY | 31 | 233 | 203 | 1.06E-12 | – | |
| Pfam | 94 | 119 | 26 | 1.4E-4 | ||
| Pfam | 235 | 277 | 43 | 2.2E-14 | ||
| SMART | 238 | 310 | 73 | 6.8E-14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0166800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…