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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0170500 |
| Transcript ID | LotjaGi1g1v0170500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glycolipid transfer protein domain-containing protein; TAIR: AT1G21360.1 glycolipid transfer protein 2; Swiss-Prot: sp|Q6NLQ3|GLTP2_ARATH Glycolipid transfer protein 2; TrEMBL-Plants: tr|I3SB29|I3SB29_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0170500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:32480115..32483464) extracted from Lotus japonicus Gifu genome v1.2.
CAAAGAACAGAAGTTATGTTACCTAAATGAGTAAAAAAATAATAATATTTGGGCTTGCAAGACTCGTTCTTCAAGTGCCA CTTGATCTAAACTTGGAATTTCTTTTTGCGTTAGATCTAGAGGTGTTTATATATAACCCCATTTGAGTATTGGAACTCAT CCATATCAAAGAACAGAAAGAGAGAGAACGAAGAAAGCTAGTTGAAATGAAGAGTAGTAGGAGAGATATGGAGAAGAGGT CGGAGATTAGCTGTGCAATTGAAGAGCTTTCTGTGGTGGTTATAGTGAAAAATCATGAGTCTCCCCACATTCCCATCAAA CCTTTCCTCTCTATATGTTATTTGGTTCTACAAGTTCTAGGTGAGTTTATCGACATATATTGTTGTTTCAAATTTACTTG GATGTCATATAGACATCTAACACATTGCTATTTTGCGTCCAACAGATAAGATAGGTCCATCAATGGCTGTTTTGAGACAA GATGTATACCAGAATATTAAGGTAAAATTAAGGACTCCAATATTGCAGGGTTAGCTAAATCTCTCAATTTAACTCACCCT ATACTTGAAGGAATTCTCTTCCCTTTTCGTATTATACAGGGTTTTGATTCATTCACATCTCATCATTAACAAACTGTTCT CGTTTAATTTGACTATTCTAAAGTAAGAGACTAACTTTATAGTTTAAAATAAACTATCACATTCACATCATTGATTGAAA AATAAGATAAATATTTAAAAACCATAGTTTATCATACATGTGTGCAATATATCACCATAATCACAATCCTAATTTCCAAA TCAATGGTTATGGTGACTTAACTCTCTCATCACTTTAATCAAATTCTATTACATCACTATATCATATTTTATGTGCTCTC TTTTCTTTTCCCTATCTGTCAAATTATTAGCTTGTGAATTAAATTCCATTTCAATGCAGAGACTAGAACTGATGCATGAA ACAAATCCCTCTGTGAATTCAAATGTGGTTGAAATTTTGAAATCAGAAGTCAGAGAAGGCAATGCACGAAACGGGTCTAA CTGCACTAAGGCCTTTGTTTGGCTTACTAGGTGAAAAGTTTATGACACGTATAGAGATTCATGTTGATTATACAAAGAAT TTAATTTATATAGATAAGAGTTTTACTCACTTTTACACATGCATCCAATCAAATCTCTCAATTTTTTTCTTGGGCAACTA TGCAGGGCTCTGGATTTCACCTCTTCACTATTACAAGCACTACCAAAAGATCCAGAAAAGAATATGAAGCAACTAGTGGA AGAGTCTTATGATATAACTTTAAAACAATGGCATGGGTGGATTTCATCATCTGCTTTTAGAGTAAGTCACTTGGTCTGTT TTCCCCTGTTTTTTCCAATCTATTAATTTAATGTCCGATTCAGTATTTAGTGAACAACATATGTTCATTTGTACACTTTT AGTCATGGACAATTCGATGGTGGACCGTGATTTTCTTAATTTATTGTAAACAAAGCCTTCATTAATTAATATCAGTAGAA CTAACTGAAATTAAACTGCAGGTGGCCCTAAAACTAATCCCAGAACGTAAGACTTTCATGGATCTCCTTAAGACAGAAGA TGAAAACCATGATACCCTAAAAGAGAAAATGCAGATATTGGCTTCCTTGTTTGTGCCTGTTCTTGAGGACATCCATTGTG TTATAGTAAGATTGATTTCAATATTTTTCCTGAAAACCACAATTCAGCATGAAATTTCCTATATAATATACCTTTTCTAT TTGTTTTGCAGAGATTGTATAACCTGGACACCATGAAGTCAACGTAGTGTCAAACTTATGTTTTGTGTATTTGTCTTCCT TTAAGTTGTAATATAAATAAGTTGTATTCTAAAATGGAGTTGTCTAAGATACAAATCAAGTGTTGTATATATGGAAAAAG AATGTTCAGTAAGGAACTTCTTTCAAACTCTTCATCTACAAATTTCTGTATCACAAACTGGATTGGACGGGTAAAACCTT AGCAATAGGACCTGCCCAATACGTGCTTGTAGAGGGAGATTCCCCTCAAGACGACATAGGGTTGTGACGAGCAGAATCTA TCAAGTGGGCTCAAGGGCGAGCTATCAATATTCAGATCTTGGGAGCGCCCTTCGATGGATGCTTATAAAGGCGCTCCCCC TCGCACTCCTGGAGGGGCGGCCTCCTAGCTTAAGGCCTAATCCTGTTAAAGTGAGTTTTGGCTTAGACATCAGCTTGTAA GGGCTCTTTGGCTGATTGTATGAGGTCCAAGAGTCCAGCTAGGTTTAAGATTTAGGCTTTGGCTCCTTCCCACTATAAAG GGAAGATCCTATCTTGTAATTGGGGTTGGCTCATTTTTATACACTAAGGCGGCTAGGTTGTTAGGGATCCTACTTTTGTT AGAGTTCCGACCTTGTTTCCTCTCTTGCTCACCAAATCGTGAACATTGGCTCCACCTGTGGGTTTCTAGTAAACACATTC CTAGATCTCGTGGATTCTTGGAGTTTTGATGATGCAAACATGTTACGGTGGATTGAAGGGTGGAGGTCTCAAATGAGGGC CACCACCATAGTGGGTGTGGTCCAGGAAATAGACGCTTCGGAGGAGGTCTACACCAGGTGGATTTAGGCAAAGGAGGATC GCAGGGTCCAACCCTGGGTGGAGGAGGCCCTCAGGGTTCAGATCAAGGTGGAGCAGGCCCTCAGGGTCCGGATTTGGGCG GAGAAGGACCCTAGGTTGCTTCCATCAAGATATAAATTGATGACGATGACGTGGTTCACCACCCAATTGGCGAGCTCCAT GGCCAATTTCATTGACTTTTCCACGAAGTTTTTACCTTAGTTATCAACGAAGCTGACACAGAGGGCCACTAAAAGTTTTT TGAAGTGCCTTAGGAATCTACATTAACGAACATAGTCTCTTCCTCGAGTGATCGCTTGATTAGGAAATCGTTTTTTTTAA TAGGCAAATGTTAGTTGTTAGTAAATTAGTACAAATTATCCTTCCTTAGGGGTCGAACCTTGATCATTCACCTGCAATTA CCCTTAGCTCAACCATATGAGCTATCCACACCACTCCTTGATTAGGAAATCGTAATATTGGTTTCTCAACTGACTCACAC AACTACCCTAAAACTCAAACTCATTTAAACCAACCGCACCTTAATGCCAAGCCAACGTGGCACATTACTAGCCACATCAC TCAATTAGTTAACGTTAATTGACATTTTAAGAGGTAGATACTATTTTAAACGACAATCTCCAACATTAGTGACGACTAGA GGTATTTCTTAAGTTCAATGACTAATGTTTTTTTGAAAAGCAAGTTTAATGACTAACTTCACTGAGTAAT
CDS sequence (LotjaGi1g1v0170500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGAGTAGTAGGAGAGATATGGAGAAGAGGTCGGAGATTAGCTGTGCAATTGAAGAGCTTTCTGTGGTGGTTATAGT GAAAAATCATGAGTCTCCCCACATTCCCATCAAACCTTTCCTCTCTATATGTTATTTGGTTCTACAAGTTCTAGATAAGA TAGGTCCATCAATGGCTGTTTTGAGACAAGATGTATACCAGAATATTAAGAGACTAGAACTGATGCATGAAACAAATCCC TCTGTGAATTCAAATGTGGTTGAAATTTTGAAATCAGAAGTCAGAGAAGGCAATGCACGAAACGGGTCTAACTGCACTAA GGCCTTTGTTTGGCTTACTAGGGCTCTGGATTTCACCTCTTCACTATTACAAGCACTACCAAAAGATCCAGAAAAGAATA TGAAGCAACTAGTGGAAGAGTCTTATGATATAACTTTAAAACAATGGCATGGGTGGATTTCATCATCTGCTTTTAGAGTG GCCCTAAAACTAATCCCAGAACGTAAGACTTTCATGGATCTCCTTAAGACAGAAGATGAAAACCATGATACCCTAAAAGA GAAAATGCAGATATTGGCTTCCTTGTTTGTGCCTGTTCTTGAGGACATCCATTGTGTTATAAGATTGTATAACCTGGACA CCATGAAGTCAACGTAG
Protein sequence (LotjaGi1g1v0170500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKSSRRDMEKRSEISCAIEELSVVVIVKNHESPHIPIKPFLSICYLVLQVLDKIGPSMAVLRQDVYQNIKRLELMHETNP SVNSNVVEILKSEVREGNARNGSNCTKAFVWLTRALDFTSSLLQALPKDPEKNMKQLVEESYDITLKQWHGWISSSAFRV ALKLIPERKTFMDLLKTEDENHDTLKEKMQILASLFVPVLEDIHCVIRLYNLDTMKST
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 218 | 216 | 4.0E-115 | – | |
| PANTHER | 3 | 218 | 216 | 4.0E-115 | – | |
| Gene3D | 7 | 217 | 211 | 5.6E-45 | ||
| SUPERFAMILY | 30 | 215 | 186 | 2.62E-46 | ||
| Pfam | 35 | 175 | 141 | 4.6E-38 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Biological process | Intermembrane lipid transfer | The transport of lipids between membranes in which a lipid molecule is transported through an aqueous phase from the outer leaflet of a donor membrane to the outer leaflet of an acceptor membrane. This process does not require metabolic energy and can be either spontaneous or mediated by lipid transfer proteins (LTPs). | ||
| Molecular function | Intermembrane lipid transfer activity | Enables the removal of a lipid from the outer leaflet of a donor membrane, transports it through the aqueous phase while protected in a hydrophobic pocket, and brings it to the outer leaflet of an acceptor membrane. |
Expression pattern of LotjaGi1g1v0170500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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