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LotjaGi1g1v0184500.2

Overview

Field	Value
Gene ID	LotjaGi1g1v0184500
Transcript ID	LotjaGi1g1v0184500.2
Related isoforms 1	LotjaGi1g1v0184500.1
Lotus japonicus genome version	Gifu v1.2
Description	UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; TAIR: AT4G16710.1 glycosyltransferase family protein 28; Swiss-Prot: sp\|Q9D8C3\|ALG13_MOUSE Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13; TrEMBL-Plants: tr\|I3SBY5\|I3SBY5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0184500
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr1:36145120..36146874) extracted from Lotus japonicus Gifu genome v1.2.

ATGGAGGATGAGGAAGGGGATCAAAAGACAAGGAGAGTGGTTTTCGTGACTGTAGGGACAACTTGTTTCGATGCTCTTGT GAGAGCAGTGGATTCTCAAAATGTTAAACAAGAGTTGTTTGCCAAAGGGTATACTCATCTTATCATCCAAATGGGCCGTG GATCCTATGTTCCTAATAAGGTATTTTCAAACTGTGTTCACTCTCTCCTTTTGTTTTTAGTTCTTTCTTTGGGAAATAGA TTTTTACATTTGCAAATAATTTTTGCATATTTTCTTAGTACAAATTCATAAATCATAGATATTGATAGAGAGATAGACAT AGTTTCTAATGGGAGAGTATGTTTTCATTCTTGTGCTGATATGGGCTATGAAAATTCATGTGAGATTGTTACCTAAAAAC ATTTGCTAAATGACCTTTCTGGACTTAACTTGATATCATGATTGGTATTTGCCTATTCGGGTCTTTGAGAGATTGAGAAA GAATATGTATGAGGAATCTTGGAGAGATAATTAGGTGATGGTAGCTCATAAGAAGTGACAACTGTGGAAGCTTGCTTTAA GAAAGTTGAGATATAACTGCAGAGCTTTGTACCATGTTAGTTTCAGAAATTGAGCCAAGTCTACCCAATTCTGCCCGAGT TAAGGAAAAAACGATCCTGCATCTGAGTTAACTTGATTTCGCTAAGAAGGAACATTTACTCGTCGAAGTCTAAGAGTTCA CTCGCGAGTTTGACAACCATTCTCAGAAGAAGTGACAACTGTGGAAGCTTGCTTGAAGAAAGTTGGCAGATAACAACAGA GCTTTGTACCATGTTGGTTTCTGAAAAAAGTTTAGTTGTGTTCATTGCGTTGATGATTGGATATTGGATACACATGAACA CATCTATGTAGTAGCACAAGCTTATGTCTAATTAAAGCCAAGTTGATGTTAGTGTGCAGCAAACTCGCCAACAACTTAAC TATTAGATAAAAAAAACTAATATCCGTGCAACCAAGTTCAGAAATGGAGGAAGATATTAGGATCCAAATGCAAGGTATGA GATTGGAAGTATGGGATTCTAATATGGGGTTTATAAGGCCTTGGGCTCTCTAACTACTACAGCTAGCTTTACGGTATGGT TCTCCAAGATTCTTATCAGAAGATAACTCAATATGGAGAAATTTTTAAAACACTTGGTTGTTTGAATTTAAGGACACAAT TAACTGCCATGATTTTATTCTATTTGTTGAAAAATTATTGAGAAGTATCATTATCTATAGCAGATACTTTCTTTTTACTG ATATTATTGTTCTTTCGTAACTTTTTAATGCAGTCTGAAGGAGATGGTTCATTGGCTGTAGACTACTTCACTTTTTCATC CAGTATTGCTGACCATCTCAGATCTGCTTCTCTTGTCATTAGCCACGCAGGTAGGAAAATTCAAGTGACTTTTGCTCTTG CTGTTTTTGTTATTCGGGGCTTTTGTTATTGAACTCTAGCTATTCTGATTTTATGCAGGGTCAGGTAGCATATTTGAATC ATTGCGGCTCGGCAAACCTTTACTTGTAGTTGTAAATGAAGATTTGATGGATAACCATCAAAGTGAGCTTGCAGAAGAAC TGGCCAATAGAAAACATCTGTATTGTGCTAGTCCTCAAACAATTCTTCAAACTATTGCAGATATGGATTTAAATTCACTC CTCCCTTACTCTCCAGGTGATGCTACACCAGTGGCCAAGCATATAAATAGATTCCTGGGTTTTCCTGATGATTGA

Download Genomic Sequence

CDS sequence (LotjaGi1g1v0184500.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGGATGAGGAAGGGGATCAAAAGACAAGGAGAGTGGTTTTCGTGACTGTAGGGACAACTTGTTTCGATGCTCTTGT GAGAGCAGTGGATTCTCAAAATGTTAAACAAGAGTTGTTTGCCAAAGGGTATACTCATCTTATCATCCAAATGGGCCGTG GATCCTATGTTCCTAATAAGTCTGAAGGAGATGGTTCATTGGCTGTAGACTACTTCACTTTTTCATCCAGTATTGCTGAC CATCTCAGATCTGCTTCTCTTGTCATTAGCCACGCAGGGTCAGGTAGCATATTTGAATCATTGCGGCTCGGCAAACCTTT ACTTGTAGTTGTAAATGAAGATTTGATGGATAACCATCAAAGTGATGCTACACCAGTGGCCAAGCATATAAATAGATTCC TGGGTTTTCCTGATGATTGA

Download CDS Sequence

Protein sequence (LotjaGi1g1v0184500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEDEEGDQKTRRVVFVTVGTTCFDALVRAVDSQNVKQELFAKGYTHLIIQMGRGSYVPNKSEGDGSLAVDYFTFSSSIAD HLRSASLVISHAGSGSIFESLRLGKPLLVVVNEDLMDNHQSDATPVAKHINRFLGFPDD

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR47043 View details on PTHR47043 Search for proteins/transripts with this domain View external data on PTHR47043	1	122	122	3.0E-65	–
PANTHER	PTHR47043:SF1 View details on PTHR47043:SF1 Search for proteins/transripts with this domain View external data on PTHR47043:SF1	1	122	122	3.0E-65	–
Gene3D	G3DSA:3.40.50.2000 View details on G3DSA:3.40.50.2000 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.2000	8	131	124	1.3E-36	–
SUPERFAMILY	SSF53756 View details on SSF53756 Search for proteins/transripts with this domain View external data on SSF53756	9	110	102	7.22E-10	–
Pfam	PF04101 View details on PF04101 Search for proteins/transripts with this domain View external data on PF04101	13	121	109	3.0E-26	IPR007235 Show description in modal box View details on IPR007235 Search for proteins/transripts with this domain View on EBI InterPro Service
CDD	cd03785 View details on cd03785 Search for proteins/transripts with this domain View external data on cd03785	38	120	83	2.02778E-8	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0016758 View details of GO:0016758 AmiGO InterPro QuickGO	Molecular function	Transferase activity, transferring hexosyl groups	Catalysis of the transfer of a hexosyl group from one compound (donor) to another (acceptor).	Subterm of View details of GO:0016757

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0184500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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