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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0193000 |
| Transcript ID | LotjaGi1g1v0193000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 3-oxoacyl-reductase; TAIR: AT3G55290.1 NAD(P)-binding Rossmann-fold superfamily protein; Swiss-Prot: sp|Q9X248|FABG_THEMA 3-oxoacyl-[acyl]-carrier-protein] reductase FabG; TrEMBL-Plants: tr|A0A0R0L518|A0A0R0L518_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0193000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:38147048..38149371) extracted from Lotus japonicus Gifu genome v1.2.
GTCACTGTCTAAATTCTACTTCCTTCTTCATCTGCAACTTCCGAGTACCGTGTCGATGGTTGCTGCCACCAAACATCACG TTATTTCCATCCACACAATTTCTCTTTAAATAAACAACCCCACTCCTTATTTCCTTCACCATCTCATCTCTCACACATAC TCAGTGTGATGAATCAAATCAAACCAATGGCGATGGAGCCGTGGCACAACCTTGCTGGAAAAGTGGTGTTAGTCACCGGC GCTTCCTCCGGCCTCGGCCGTGAATTCTGCCTTGACCTCGCTCAAGCCGGTTGTCGCGTCATTGTTGCAGCTCGCAGGAC CGAGCTGCTCCAATCCCTCTGCAACAAAATCAACAATGGTGGCAGCGTCCTTCGCGCCGTCGCGGTGATGCTCGACGTCT CAGCGGACGGCGCCACCATCGACAAGTCCGTGCAGAAGGCGTGGGAAGCTTTCGGCCATATTGATGTGTTGATCAACAAC GCCGGTGTTAGAGGTAATTAGTCTCAAACCTTGGATAAATTGAAAACACTTTAGGGTCTCAAATCCCAATGTTCATTTAA CATCAAATTGAAATAATAAATAGTTATTTTTGAAAGATTGATCGACCCACATCCAATTGAAACTGAACATGCTCATAATG TACTCAATTTGGATATGAACTAAGTGAAATTATATTCATGATTATGAAGGCAATGTGAAATCAGCTTTAGAATTGAGTGA GGAGGAATGGAATCAAGAGTTGAGAACGAACATAACTGGTACATGGTTGGTGTCAAAGTCGGTGTGCAAACGCATGCGAG ATGCTTGCAGGGCAGGATCAGTGATCAATATTTCATCAATTGGTGGTTTAAATCGGGGACAATTGCCTGGAGGTGTTGCA TATTCTGCTTCCAAGGTGGGCGTCAACATGTTAACAAAGGTGCGCTTTTGTCTTAAATTAATTTAGTGTTTTCTGATTAA TATAATGGTTTTTTAATTTTAAAATATTTTTTTTTTCAATAAACAAGCACTTTAATTAATTTTTTTATGCCACTAAAGGA TGTCACCTGTTCTGTTGCATTTTTTTCAAGAAATAAAATTTTCAGAATTTAAATTAGTGCTCTCATCTTTGTAGGGTATG TTTGCTTACCATTAAATCTACTAAACAAATTAATATTTTGTTGGTGCACTCTTATTAATTTTAAAAGCCTACTTTGAATA TTCATATTTCTATTTTAATTAAATTTTCATTTGTAATTTCATTTTTTTCGTTGGATTTATTAGTAATTTGACTAACCTTT TTGTAAGTAGAGTAGAAAATGAACGGGTACGGTTGACAATGAGTTATTTAATCTTTCTTATCAGCATACACGAGTTGTGT TGACTGTTGACTGACCCCTTTGTTTATGGGTGGTGTTTGTGATGCTTTCCTTCAAGATATTCAAGACAGTTGGAGAGATA TTATAGGAAAGTGAGTGATTAATGATTTTTTTTTATTTGCAAGAGTTGAGTTGAGATTCAAAACCTAAGTACTTGCTCAT CCTTTAATCTTTACAAGTTAAAACACTAGTTTTTATTTGCGCACTCAACCACACACAGTTATAACTAAGTGGAAAATCTT TGGTAAGGGTGTAATAATTTCCTAACTTGTCTTGGGTTGTGACTTTGTATTTTAATTTTACAAGCTTCTTTGATGTTCAG AAAATAAAATATGCTTTAATGATTTTGTTAACTATGACTAAACAAAGACATGTTGATATCATTCTTATTTTTGTGTATTG ATATTTAACAGGTCATGGCATTGGAATTGGGAGCACATAGAATCAGAGTGAACTCCATATCACCTGGGCTGTTCAAATCT GAAATCACAGAAAAATTAATGGAGAAAGATTGGTTGAATAATGTGGCCATCAAAACAGTGCCCTTGAAAAAATTTGGCAC TCCGAATCCAGCATTAACATCCATTATTCGTTACTTAATTCATGATTCTTCAGAATATGTTTCAGGAAATGTTTTTATTG CGGACGCTGGTGCCACCTTACCAGGTCTTCCTATTTTTTCCTCATTATGAATGATGGATGTATGATATCAATTTTTGCAG GAATGTTTTCTTATAGAGTAAATTACAATATCAGATATTTATTTTGTCTATCTATATATCTATCCTCATTAATATTATAT GCTAGTATTGATTTCCGCGCCATGCATGTATGAATAAGAGTACTTTGTCGACATACATCCGACTTTATGAGTTTTTTTTT TCTAATCCAATTTTTTTTGATTCATCGAAAAACAATTTTTTTTCTAATCCTCATTAATATAGCAAAACAGTTTTAACCTT CCGG
CDS sequence (LotjaGi1g1v0193000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATCAAATCAAACCAATGGCGATGGAGCCGTGGCACAACCTTGCTGGAAAAGTGGTGTTAGTCACCGGCGCTTCCTC CGGCCTCGGCCGTGAATTCTGCCTTGACCTCGCTCAAGCCGGTTGTCGCGTCATTGTTGCAGCTCGCAGGACCGAGCTGC TCCAATCCCTCTGCAACAAAATCAACAATGGTGGCAGCGTCCTTCGCGCCGTCGCGGTGATGCTCGACGTCTCAGCGGAC GGCGCCACCATCGACAAGTCCGTGCAGAAGGCGTGGGAAGCTTTCGGCCATATTGATGTGTTGATCAACAACGCCGGTGT TAGAGGCAATGTGAAATCAGCTTTAGAATTGAGTGAGGAGGAATGGAATCAAGAGTTGAGAACGAACATAACTGGTACAT GGTTGGTGTCAAAGTCGGTGTGCAAACGCATGCGAGATGCTTGCAGGGCAGGATCAGTGATCAATATTTCATCAATTGGT GGTTTAAATCGGGGACAATTGCCTGGAGGTGTTGCATATTCTGCTTCCAAGGTGGGCGTCAACATGTTAACAAAGGTCAT GGCATTGGAATTGGGAGCACATAGAATCAGAGTGAACTCCATATCACCTGGGCTGTTCAAATCTGAAATCACAGAAAAAT TAATGGAGAAAGATTGGTTGAATAATGTGGCCATCAAAACAGTGCCCTTGAAAAAATTTGGCACTCCGAATCCAGCATTA ACATCCATTATTCGTTACTTAATTCATGATTCTTCAGAATATGTTTCAGGAAATGTTTTTATTGCGGACGCTGGTGCCAC CTTACCAGGTCTTCCTATTTTTTCCTCATTATGA
Protein sequence (LotjaGi1g1v0193000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNQIKPMAMEPWHNLAGKVVLVTGASSGLGREFCLDLAQAGCRVIVAARRTELLQSLCNKINNGGSVLRAVAVMLDVSAD GATIDKSVQKAWEAFGHIDVLINNAGVRGNVKSALELSEEEWNQELRTNITGTWLVSKSVCKRMRDACRAGSVINISSIG GLNRGQLPGGVAYSASKVGVNMLTKVMALELGAHRIRVNSISPGLFKSEITEKLMEKDWLNNVAIKTVPLKKFGTPNPAL TSIIRYLIHDSSEYVSGNVFIADAGATLPGLPIFSSL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 269 | 268 | 3.1E-71 | – | |
| PANTHER | 8 | 277 | 270 | 5.3E-150 | – | |
| PANTHER | 8 | 277 | 270 | 5.3E-150 | – | |
| SUPERFAMILY | 17 | 268 | 252 | 8.21E-67 | ||
| SMART | 18 | 209 | 192 | 0.0018 | – | |
| Pfam | 18 | 217 | 200 | 5.4E-53 | ||
| PRINTS | 19 | 36 | 18 | 1.2E-29 | ||
| CDD | 20 | 263 | 244 | 3.08002E-66 | – | |
| PRINTS | 96 | 107 | 12 | 1.2E-29 | ||
| PRINTS | 96 | 107 | 12 | 2.7E-13 | ||
| PRINTS | 145 | 161 | 17 | 1.2E-29 | ||
| PRINTS | 151 | 159 | 9 | 2.7E-13 | ||
| PRINTS | 173 | 192 | 20 | 2.7E-13 | ||
| PRINTS | 173 | 192 | 20 | 1.2E-29 | ||
| PRINTS | 194 | 211 | 18 | 1.2E-29 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0193000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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