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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0198400 |
| Transcript ID | LotjaGi1g1v0198400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DUF868 family protein; TAIR: AT4G12690.1 DUF868 family protein (DUF868); Swiss-Prot: sp|Q04968|OSPA7_BORBG Outer surface protein A; TrEMBL-Plants: tr|G7J482|G7J482_MEDTR Protein phosphatase 2c, putative; Found in the gene: LotjaGi1g1v0198400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:41231748..41233612) extracted from Lotus japonicus Gifu genome v1.2.
CTCACTGCCAGACCATATGCCAGTTTGGAAAAAAAATCATTTCCTTTTCTTTTTCAAATCCCATTAATGCTGCTGCCAAT TGAACACCTCTGGCAGCACCTAGCTTTCACACACCTTCTAACTCAGATCTTCCATCCAAACAAGTTACCAATTCCTCTCA ATCAATTCTAATCACACTTTCAAGTTATATCTTCTCTGCTCCAACAAACTCAAAGTTCATCATCATCATCAACAATGCAA GACTCAATTGGGATTCCTGCTTGCTTTTCTTCATCAATTGATGATCGTGATGGAGCTGTGACCCGTTCAGGCCAGAGCGT GTACATGTCTGTATACAGAACAAAGATAGCTGGTCACTGCCGCATTATCACCATCACCTGGTGCAAAAACTTGCTGCTTC ATGGTCTATCAGTCTCAGTGGAAGGTCCACAAGGAGATACCCAATTCAGCTGCAAGGTTGAGCTAAAACCATGGTACTTT TGGAGAAAACAAGGCTCCAAGCGATTCACAGTAGATCACGGCAAAGAAATTGAAGTTTTCTGGGACCTTAAGGCGGCGAA ATTCAACGGCGAAACAGAACCAGCCTCTGATTACTATGTAGCAGTGGTTTGTGATCAAGAGGTTGTTCTGCTTCTGGGTG ATCTGAAGAAAGATGCGTACAGAAGAACAGGTTGCAGGCCAGCGCTGATTGACCCAATCCTTGTTTCGAAGAAGGAGCAC GTTTTCGGGAAGAGAAAATTCTCAACCAGAGCCAAGTTCCATGAGAAAGGTAGGTGCCATGAGATCTCAATTGAGTGCAA GAATAACAGAATTAGCAGCAGCAATAATGGAGGAGATATTGTAGAGTGTTTGAGAGGGGTTCAGATTCAGCCAGAGATGG AGATAAGATTTGATGGGCAATTGGTGATCCATGTGAAACACTTGCAGTGGAAATTTAGAGGGAATGAGTCTATTCATCTC AACAAGGTGAGAGTTGAGGTGTATTGGGATGTTCATGACTGGCTTTTCAGTCCTGGTTTAAAGCATGCTTTGTTCATTTT TAAGCCAGTTTTTTTGTCTAGTTCTCTGTCATCTATGTCTTCATCTTCACCACCTTTGTCATCTTCATCCTCATCCACTA CTCCATTATCAACTCAGACTGAGAGTTCTGGGTCATTATTGGAGGGTCGTAGTGGGAGTGAATCATCAGATTTTTGCTTG TTTCTTTATGCTTGGAAGACTGAATGAAAAGGATACATATTATGTGTCATCAATCATCCTAAAGGTATTATCATGATCAT ATCATATCATCAGCAAGGAATTTTTTCTCATAATCAATTCTAACGTCAGAAGCAACTCATATTAGTTTCTGATCAAAATT ATGTAAGCTTCAAAATCAACTATAGAAAGATTTGTAAGCACACAAATTGAAAGGGAATGGTGGTGATGGTGATGCAGATT GAGATTGAGATTGGTTTGAGTTTGAGACTTGTGAGAAAGAGGGATCTTTGTATTGAGGAGGCCAGTGGGGCCACAGAGAG GTTTTGGGAGTTAGCTACAGCTGGGGTTTGAACAGTGGCACTAGCCCATAATGGACGAAACAGATTGAGTCACTCACACA TGCTTAATAATATTTCTCCATCCAGAGGCAGCTGGGTCTACATCTGTCATCTACCACTTTGGAAAAATTATTCTCTTTCC TCAATTTCGTGATCTAATCTTGAGAAGAGAGTTGTATATGTGTCAATCAATCACAGGTGTATGCTATCTAAATTATTATG CATATAATAGAAATATAAACAACAGATTAATGAACTGAATGTCTGTATTTGCCAAAAAGAAGCTCATGCATGTGAATGAA ATTAATACAAGTTAGAAACACAAGA
CDS sequence (LotjaGi1g1v0198400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAAGACTCAATTGGGATTCCTGCTTGCTTTTCTTCATCAATTGATGATCGTGATGGAGCTGTGACCCGTTCAGGCCA GAGCGTGTACATGTCTGTATACAGAACAAAGATAGCTGGTCACTGCCGCATTATCACCATCACCTGGTGCAAAAACTTGC TGCTTCATGGTCTATCAGTCTCAGTGGAAGGTCCACAAGGAGATACCCAATTCAGCTGCAAGGTTGAGCTAAAACCATGG TACTTTTGGAGAAAACAAGGCTCCAAGCGATTCACAGTAGATCACGGCAAAGAAATTGAAGTTTTCTGGGACCTTAAGGC GGCGAAATTCAACGGCGAAACAGAACCAGCCTCTGATTACTATGTAGCAGTGGTTTGTGATCAAGAGGTTGTTCTGCTTC TGGGTGATCTGAAGAAAGATGCGTACAGAAGAACAGGTTGCAGGCCAGCGCTGATTGACCCAATCCTTGTTTCGAAGAAG GAGCACGTTTTCGGGAAGAGAAAATTCTCAACCAGAGCCAAGTTCCATGAGAAAGGTAGGTGCCATGAGATCTCAATTGA GTGCAAGAATAACAGAATTAGCAGCAGCAATAATGGAGGAGATATTGTAGAGTGTTTGAGAGGGGTTCAGATTCAGCCAG AGATGGAGATAAGATTTGATGGGCAATTGGTGATCCATGTGAAACACTTGCAGTGGAAATTTAGAGGGAATGAGTCTATT CATCTCAACAAGGTGAGAGTTGAGGTGTATTGGGATGTTCATGACTGGCTTTTCAGTCCTGGTTTAAAGCATGCTTTGTT CATTTTTAAGCCAGTTTTTTTGTCTAGTTCTCTGTCATCTATGTCTTCATCTTCACCACCTTTGTCATCTTCATCCTCAT CCACTACTCCATTATCAACTCAGACTGAGAGTTCTGGGTCATTATTGGAGGGTCGTAGTGGGAGTGAATCATCAGATTTT TGCTTGTTTCTTTATGCTTGGAAGACTGAATGA
Protein sequence (LotjaGi1g1v0198400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQDSIGIPACFSSSIDDRDGAVTRSGQSVYMSVYRTKIAGHCRIITITWCKNLLLHGLSVSVEGPQGDTQFSCKVELKPW YFWRKQGSKRFTVDHGKEIEVFWDLKAAKFNGETEPASDYYVAVVCDQEVVLLLGDLKKDAYRRTGCRPALIDPILVSKK EHVFGKRKFSTRAKFHEKGRCHEISIECKNNRISSSNNGGDIVECLRGVQIQPEMEIRFDGQLVIHVKHLQWKFRGNESI HLNKVRVEVYWDVHDWLFSPGLKHALFIFKPVFLSSSLSSMSSSSPPLSSSSSSTTPLSTQTESSGSLLEGRSGSESSDF CLFLYAWKTE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 330 | 330 | 3.7E-163 | – | |
| PANTHER | 1 | 330 | 330 | 3.7E-163 | ||
| Pfam | 25 | 328 | 304 | 1.2E-106 | ||
| MobiDBLite | 283 | 316 | 34 | - | – | |
| MobiDBLite | 283 | 314 | 32 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0198400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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