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LotjaGi1g1v0202200.1

Overview

Field Value
Gene ID LotjaGi1g1v0202200
Transcript ID LotjaGi1g1v0202200.1
Lotus japonicus genome version Gifu v1.2
Description Tudor domain-containing protein 3; TAIR: AT5G19950.3 tudor domain protein (DUF1767); Swiss-Prot: sp|Q5ZMS6|TDRD3_CHICK Tudor domain-containing protein 3; TrEMBL-Plants: tr|K7KWD7|K7KWD7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0202200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:42998608..43007111) extracted from Lotus japonicus Gifu genome v1.2.

TCTAGAAGTGTTTCCTCTCCGTCGTACAACTTTTGTTAAAAAGAAATAGTTATAAAGATGTGCAACCTATTTTCTAAAAG AAGAAAAAAATGTACAACCTTATAAAAAAAATATAGTGCAAACCGCAATGTGGTGCTTATTGAATGTTGTGTCCCCCGCC CTCCCTACCGTTTTATTTTACAGGAGAAAACTTAAGAACTAGGGTTTACCCATGACCATGAGAGATTGTTGAGGCTGATT GAGCATTCGAAATGGAGGAGAATTCGCGGAGTGTTTCAGAGGCAGGAACGGTGGTGTTAGAAACCCTAAGAGGAAGAGGT TGGTGTTTGGAAGACACAGACCAATTGAAAGCCATCATCGTTATTCAATCTGCACTTGCCGATGACCGTTCCAAGGTGGT AGATTTCGTTGAATCGGAGCTTCTCAATTCGGACCTTAGATCCATCGGAGCCAAGTCCTTGCCCCATCCCTCTCTTCTTC GCAACCCTTCTTCGCATCTTCTCGGCCCCAAAGTCCTTCAGGCAAAGTCATCTTCTTTCAATTTCGCGAATTTTTCATTT GTATTCGGTTTCTGTTTGTGTTGTTGCGAATATTGTATTTATGGCTCAAAGTTGAATGGGATAATTTATAGTTGTTGGTT GTTACAGATATCTTCAGTGAGGGACATTTCTAAGAGCAGTGTGGGTGGAAGTTCGGGTGGCCGGAGACTTCTTAGACTAT GTCTTACTGATGGTCACTCCGAGATCACTGCTGTAGAGTATTCTCACATTCCAGTTATACCCGATGATGTGGTTCCGGGT ACTAAGGTAATACCATTTTTTATTTGTCATGATTATGAGCCTACAACAGATGGCATGGCATGGTTTCTCTTTCCGTTAGC AATCATGTCACAAAATTTTAAAAAATTATGTTGGTTAGCTTATTGCAATGTAGATTTTGAGGGCAGGATTTGTCGTGGGT TGATGCATGTTTGGAATATTATGATATTATGATTCATGTAGTTGTTACATAGACTTTACTAGATTACTGATTTGAAAGTT AGTTATTTACATTGTTAGTTGGTAGGTTAGTTTATGTGCTCAAGTATGTAAAAGAAGTTGCTTTCTCCGCTATGTGGATC TGTACTTATATATTTTATTCATTCTTAAATACGTTTTACAGTTTATGATACTATTTTTGTACTCCTTTGGCAGATTCGTT TGGAAAATAAAGTTGCGGTTCATAGTGGCATAGCTTGCTTAAATCCTAAAGTTTTGACTGTATTAGGAGGTGTTGTTGAG TCACTTTATGAAGAATGGCAGATGAACAAAAAATACTCAGTATTCTCCCGATCATCTGTAAGGCAGTTAGAGGATCGTGA TACAGGTGGTCCGCCTTCATTTGTGAAGCTGCAGGTTGGATCTTCATCAGGTCAACAAAAAATAATCTTTCATTTCTTGA TGTTTTCTTTGCTAGTGCATGCACTACTACTTTTTATGGCCATTGTATTTTGATAGGCAATGACCCTCAATAAAACCAGT CAAATTAGGGGAGCCATAGGGGGACAACTAACTACTGTTAGTTAGAGTATATATTTAGTTAAACAATATAAATAGTAGGA GGAAGACTGTTATCATGTGGTGAGAAAATAACAGATTTGAGAGAGGCCTAGACTTGATGAGTATCCCGGAGATTATGGTG TACCATTGTTGTTCCCATTCTTTGGGTCTTGCAGTAAACAATCAAAGCCCTTCTTGCTTCTTGTGTGTTTGGGTGTATTT TCTGATTCCAGATTTTTCAAATGGTATCAAAGCTCCGATCTGGTTGATTAGGTGCATGAGACTTTTGATGATTATCGACT TTCGACAACTTAGTTTGTTGATTATTATTGCCAAACTACCAGAAGAAATCTTGTTGGAATCGACTGTTGGTAGTAGACTT AGAAGTCAGAAGATGAACTCTGTGGAGTCCAAACATTAATCATCTAAGGTGGGGTGGGTAGTCTTAGGCCAGAAATAGGA GGCCAAACTGGCTGTCCATATGAAAACCTGGGGCAATAAGCAGCTGGAGAAGAAAAAGGAAACTGTCCCAAGTTACACGG CCCAAACTGCGGAGTAAGCCCAATTTGAAATAGGCCTGAATTGATGTGCAGATCCAAACTGTGAGTGTCCACTAGACTAG AGTTCATGTAGTATTAAGATGCTGCATCAGAAATAGGAGGCCAAACTGGATGTCCATATGAAAACCTGGGGCAATAAGCA GCTGGAGAAGAAAAAGGAAACTGTCCCAAATTACACGGCCCAAACTGCGGAGTAAGGCCAATTTGAAATAGGCCTGAATT GATGTGCAGATCCAAACTGTGAGTGTCCACTAGACTAGAGTTCATGTAGTATTAAGGTGCTGCATCATGTCCACACCGGT AACAGATCTGGCACTGCATGTTGCAACCTCCACGTCCTTTGCCTCCTCGGCGACTGCGACCACCTCAGTGTTGTCAATAG CGCGCAATCGCGGCGCAATAGCGGTGCTGCGTGGCGGAGCGGTGGTTGACCGCGACGCTGGAGGTCGTTGTGGCGCAGAA ATCGCGTCGCGGCGGTAGCGGCTGCAATCGCGTCTGGAGCGGCGCGAGGAAGAAAGGAGGAAAAACCCTAATCTTCAGGG CGAAAACCCCAAGTTGCCCCCATATTTAAACATTATGTTAAACTTTTTAAGGGTAATTTTGGGTTTTCGTTTCTTTAGTG AAACGCAGTGTTTCAAGTGAGGATAAAAACCCTACTGTTCAGGGAGAAAACCCCAAAATGCCCTCAGATTTAAACATAAT TGTAAACTTTTTAAGGGCATTCTGAGGCTGTCACAGTTTCTTTAAATGGAACGCTGCGTTTTACTCTTCTTCAACCTTGC TTCTGCATTCTCCCCCTGTTTTTCACGATGAAAACAGAGATCTGTTGCTGTCTTCTTCCTCCTTCCTCCTTCCTCCTTCC TCCTTCCTCCTCCTCCTCCTTCTTCCTCCTCCTCCTTCAGCGTAGCGGCCATAGCGCTACATGCTATAGCGCTATTGCGG ATTTTGGGCTCGCCGCTACGCGACGCTATCCGCCATTAACAACACTGGACCACCTAACTGGCTGCCAAAACCATCGCGAG GATGAAAGTTACTGCCTCCATGTTGAGAAACTCAAGAAACAATTTGCCTGTGTAGATACACCAGAATTAGGATATGATTG CGAATTAAAGTTCCCAAAAGCACTGAAGCTGAAGCATCTCCAATCTGCCGTTTCTATGTACAATCAATTATGAATTCACG AGCAATTATCATTGCTTCAACTTCTGGATTTGAAGATGGAGAAGTTCGATTGTAAAAAGACAGTCAACATGGAGCTGAAT TCTTTTGTAAGGTGATATGCCCCTTGTTGATGCAAGGGCTGAAATGGATCGTCTAGGATTGCTTTGGTGCTAAAAAAATT ATGAATTGTAAGGAGGAATGGAGATGAATTGCGATCAAGAAAGAAATGGACAGAAAACGAGATGAATTTTTGTGGAATAG AGATGAAGACTTCACACAAAGGGGTGATTATCCTTTGATATGTCAGGTTCTTGAATCACTCAAGAAATCAAGAGAATCAC TCTCAAGACATGAATTTCGAAAATTCAATAAGCTTTTCATTCATAATCTGAAAATTACAATGACAATGTGCTCTTTTTAA AGGAGAAAATTTCAGCCTAGATAGAGTTTTAAGAAAGGAATGAGTGTTAAGAAAGAGTTTTAAAAAGAGCACATTGTCAT TGTAATTTTCAGATTATGAATGAAAAGCTTATTGAATTTTTGAAATTCATGTCTCTAGAGTGATACTCTTGGTTTCTTGA GTGATTCAAGAACTTGACATATCAAAGGATAATCACCCTTTGTGTGAAGTCTTCATCTCTTTATTCCACTAAAATTCATC TCGTTTTCTATCCATTTCTTTCTTAGTCGCAATTCATCTCCATTCCTCCTTACAATTCAGAGTTTTTTTAGCACCAAAGC AATCCTAGACGATCCATTTCAGCCCTTGCATCAAGGAGGGGCATATCAGAAGGCCATTGAAAATTGCATTTTGGTGGTCG CTGTGACTTACTGAATCTCCAATAGAAAATAGAAATCAAAACATTAACAATTGTCTTCATTCTTTTGAGATGATGAGTAG ATCCCGAACTTTTGGTAATAGTCTTGAGTTGAGATCTGAGTTGTGTGGACTGAGCTTGAGATTGAGCTTGGGAGAAGTTT TGAATCTCCTCCCAAACTTGCCAAGAATGATTACAATTGATAACTGTAAGAAGAAAAGAATCGGAATGTGAAGAAAGTAA CGAAGTAAAGAGCACAGTCTTGATGTTCCCACTTTAGGTATGCTGATCATTTTCTCTGTCTTCTTTAGTGAGAAATCAAA GATGAATATTAGGAAAAAGTTTGATTCATCATCATCATTCATCAAGCTTTATGCGGATCGAATGAGAAAAAGTTATAGGA GCATTTGATGATGCTCTGTTATTAGAACAAGAAAGAGAATTGGCGATGGAAGCCATGGATCAAGGACTGAACCTTGCTCT TCATGTCATATTGAGAAGAAGGGGAATTAGGTTGAGATAGAATTAGAGTGGGAGAAAACTGAGTGCGTAATGAAATTTTG ATATCTCATTTGATTAACTTGATCGAGGGAAGCTCTTGTATAGATAGCTGAAGACTAAAGCTTACATCAAAAGCTTACAA TAGATGCTAACAGAATTAAGCTTAACAGGAAACTAACTGTAACAGAATTTTGCTTAACAGGAAACTGTTACTGAATTCAA ACTGAAAGTTTACTCTAGTAATTTTTCTTATCTATGTAATTTTATTTGCTTATGTATAAGTTTTAAGCATAATTTACATG TCTAAAAGGGGATCTTACAATCCAATCTACAGTTACACAATTTACTATTTTTGACCACCTATGTAAGATCCGATGTTGAT AACATTGGTATTTACCCATCAAATGGGTTTGGGTAAGGGTAATTACTTATCTAATTTTGCGAGTTCTGGTGTGGGTATAG TACCTAACCCTAGTACAAGTAATTGTCCTAGTACAAATATATAGGTACCAGTGTTGTCAAATAGCGGTTATAGCGTAGCG TTTTTTTGGCTTACCGCTACTTCTCGATTACCCGCTATTAGCCGCTTTTTTCACTATTTTCCGCTTTAAGAGGCTGAAAA TAGCGGATTCTTGGCTTACCGCTATAGTCCGCGATCCGCGACCGCGATTAACAACATTGATAGGTACTCAGGGGATTAAT GTATGACAATTGAAGTTGCAACCACACGGGTATATGTTCGGGTCCCAGTATTACAATTATTTTATAGATGTGGGTACGGG AATGAGTACGGTAGTACCCTACCTATTTTCATCCCTAATTGCAATTTGTAACTAAAAACAGAAGCAGAGGGTCAACTCAG CTGGTGATTTGGAGACGTTTTACTGAAACGGAACCACACACTCAAGTGTGAGAACAGCTGTGAGTAAGCAGCTTTCCATT TCTTCCACCTTAAGGACAAGTGTGGATATATTAGGGAGGGGTATTAATAGTGGCAAAGTCCCCCAGTTACGAAGGTCTAT GTAAATCATAATAGGGAAAGCCACTGAGGATAACTAACTATTGTTAGTCTGTGAAACAATTCAAATGGGAGTGATCATGT GGTTCGAAAATAATAGATTTGGGAGAGACCTGGAGTTTTGAGTACCCAGACCAGGATATTATGGTGTAATATGTTTTTCC CATTCTATGGGTCTTGCAATAAAGAATCAAAGCTTTTCTTGCATCTTGCGTGTATATTTTCTTATTCCAGTTTTTTCATA CTTTTGGCATTAGATACTGCTGTTCGCACCAGTCCATTATTGTGTTATTATTGTTTGTGTGGACTACTTGATGGAGTAAA TTACAACCTCCAATATTTGGGAAACTTACAGGAACAAACCGTCTTGTTTGGAATTTTCCTCCTTTTTGGGTTTTATGATA CATGTAACTCCTGTTAAATTATCTCCGGGCATTTTTCTCCAGAGAAACAAGGTTCAAACATGGACACCTTCTCCTTACCA ATTTCCATCCATTAAATAAACCATCAATGAAGATCATTGTAATAACTAATACCAAAATCCAATGGGTGATTTTGTAGGTT TCATAAGCCTCAAGGGAAGTCAATGTAATTGCTTGAGTCTCGATTATTTTGCAATCTTTGAACAAATATGGATACCCCTA TTTTTGATTCTTTGTAATTGGCTTTCAAACCTGAAAAGGATTATTTGCAATTCATAATGCATGAGTAGTTTTCATTGAGG ACAATGAAGCTGACATCTTGCAGGTTTTGCAGGTTATAACTCTAGAAGTGATAAGCCTATTGCTGTGGTGGGTGAAACTG AGATGAGGACAACTGGTATTGAGCAGAACACTAAGCAGAAGGCAGAGGTTCTGGACGTAAATCTAAAATCGAAATTGCCC CCAGGAAGATCTGACGACAAACCTAGTAGTTCATGGACTAGGCAGAAAGAAGGTGCTGCCTTTTTCGATCATTTTTTGCG TTTTTTTGTATGTATGATATGGTAATCTTGAGCTGCTCTTATCACTTTTTGCTGATTGGAATGGCATCTGGTTGCCAAGT GTAAAGGAGTGTCAACATAATAAACGGAACTTATTCAAACCCCACATGCAAATGCCCTGTTAAGGGATTGGCTGGTTGAA TGGTTGATTTGATATTAACAAAGTGGCTTGCTGCATCTCTTGGGAAGATCAGTGTTTGCCAATTTCCACCCATTGCTATA AACCTCCAAGGAAGATCAGTGTAATAACTAATACCCAAAACTAATGGCTATGTTTTAGATTTCATAACTCTCAAGGGAAG TCAGTCTAATTTACTTGAGTCTTGATTTTATAATGAAATGTTTGAGCAGATATTGATACCTTATTTGTGATACTAATAAT AGACCTTCAAACCTGAAAAGGATTGTTCGGTTCAGAATGCATGAGTAGTTTTTAAAGAGTTGGCGAAGAAGCTGACCTCT TGCAGGTTTTGCAGAATATAACTCTAGAGGTGGTAAGCCCATTGCTGTGGTTGGTGAAGCTGTGATGAGGCCAACTAGTA TCCAACAAAACACTAATCAGGAAGCAGATATGTTGGACGTAAATCCAAGATCCAAATTGCCCCCAGAAAGAGCTGACGAC AAACCTAGTAGTTCAGGGACAAGGCCGAAAGAAGGTGCTGCCTTTTCTGTTTTTTCCCCCTTCTTTTTTGTATGTATGAT ATGGTAATCTTGAGTTGCTTCTGAAATTAAAACCTGAATAGAAAAGGTGCACCAGGAATTGACATTTTCCCCCTCTTACG ACTTTTTGTTGGTTGGAATGGCTTCTTGCCAAGTGTTAAAGGAGTGTCAACATAATAAATTGAACTCGCATCCAAATGCT CTGGGAAGGGATATGCTTGTTGGATGTTTAGTTTGATATATTCACTAAGAGACTTGCTGTGTACAGTATACGTAGAGGAA CCAGAAGTCATTGAAATTTAATTGAACACTCAAATGATGAAACAATTTACATGCCTTTTTAATGATGGAATCCATTTTTG TTAGTTATTTGTTCTCTGTTACAGTTGTGGAATCTGTTCCTGTGCAAAATCAAGCTGCTGCCCAAAAATTACTTCAGAAA CTGAATAACCCATATCAGGATGGTCGGAATCCTAAGGGTTGGAAACATAGGGGCAGAGGGAGACAAGAAGATCCAGTTGT ATTTACTCTGGATGAATATGAAAAAAGAAAGTCCCAGGCAAAGCCTTCTATTAAAGACGATGTTGTAGATGTTAGTCGTG ATGAGGATCTTGCTTGGCAGCTTCAGAATCAATTTAACCTTGAAGATTCTGGGGTAAGTTGTGTAATCTCTCTTAGTAAT GTTTGTGAGTTTCGTGCTGTTTTGTCTTACTTTCCATCATTTTACTTACCCTTGCATCACCTGTTCCAATGCCCTATATG TTATTCAGGTACAAAGGGGTTCTCAGGAAACTAAGGCACAGGATATTAGAATGAGTATGTTCACATATGAAAGGGATTCT GATGGCAGTCATTCAATGTTTGAAGGAGGAAGAAGTAGGGGAAGGGGAAGAGGAAGAGGAAGGGGCAGAGGAAGAGGGAG GGGAAGATAGTGGTTAAGGATATTTAACTTTCTTGTGTCTTGGATATTTTTCTTGTTCCTTTCTTTTTCATTTTTATCCT TTTTTAGATACTGAAGCAGCTCAACGTAGATATTCTGAACTCGAACCTCAGTTAATATTATCATCCAATTCCTCCATTAT TCAGCTGTGGGTCGGTCCATAGTGAATTATTGAAGGGAAATACGGTTCAATGAGTCTTAGCGAGAATCAGGGTCTTATGT AAAACTTCGCATCAAACTGTCAGGTTGTAATATGTTTATAAAGAGAGACAAACTTATGAACCGGATTTAATACATATGAA TAGATATTTGACTCAATGTTTCGC 

CDS sequence (LotjaGi1g1v0202200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGGAGAATTCGCGGAGTGTTTCAGAGGCAGGAACGGTGGTGTTAGAAACCCTAAGAGGAAGAGGTTGGTGTTTGGA AGACACAGACCAATTGAAAGCCATCATCGTTATTCAATCTGCACTTGCCGATGACCGTTCCAAGGTGGTAGATTTCGTTG AATCGGAGCTTCTCAATTCGGACCTTAGATCCATCGGAGCCAAGTCCTTGCCCCATCCCTCTCTTCTTCGCAACCCTTCT TCGCATCTTCTCGGCCCCAAAGTCCTTCAGATATCTTCAGTGAGGGACATTTCTAAGAGCAGTGTGGGTGGAAGTTCGGG TGGCCGGAGACTTCTTAGACTATGTCTTACTGATGGTCACTCCGAGATCACTGCTGTAGAGTATTCTCACATTCCAGTTA TACCCGATGATGTGGTTCCGGGTACTAAGATTCGTTTGGAAAATAAAGTTGCGGTTCATAGTGGCATAGCTTGCTTAAAT CCTAAAGTTTTGACTGTATTAGGAGGTGTTGTTGAGTCACTTTATGAAGAATGGCAGATGAACAAAAAATACTCAGTATT CTCCCGATCATCTGTAAGGCAGTTAGAGGATCGTGATACAGGTGGTCCGCCTTCATTTGTGAAGCTGCAGGTTGGATCTT CATCAGGTTATAACTCTAGAAGTGATAAGCCTATTGCTGTGGTGGGTGAAACTGAGATGAGGACAACTGGTATTGAGCAG AACACTAAGCAGAAGGCAGAGGTTCTGGACGTAAATCTAAAATCGAAATTGCCCCCAGGAAGATCTGACGACAAACCTAG TAGTTCATGGACTAGGCAGAAAGAAGAATATAACTCTAGAGGTGGTAAGCCCATTGCTGTGGTTGGTGAAGCTGTGATGA GGCCAACTAGTATCCAACAAAACACTAATCAGGAAGCAGATATGTTGGACGTAAATCCAAGATCCAAATTGCCCCCAGAA AGAGCTGACGACAAACCTAGTAGTTCAGGGACAAGGCCGAAAGAAGTTGTGGAATCTGTTCCTGTGCAAAATCAAGCTGC TGCCCAAAAATTACTTCAGAAACTGAATAACCCATATCAGGATGGTCGGAATCCTAAGGGTTGGAAACATAGGGGCAGAG GGAGACAAGAAGATCCAGTTGTATTTACTCTGGATGAATATGAAAAAAGAAAGTCCCAGGCAAAGCCTTCTATTAAAGAC GATGTTGTAGATGTTAGTCGTGATGAGGATCTTGCTTGGCAGCTTCAGAATCAATTTAACCTTGAAGATTCTGGGGTACA AAGGGGTTCTCAGGAAACTAAGGCACAGGATATTAGAATGAGTATGTTCACATATGAAAGGGATTCTGATGGCAGTCATT CAATGTTTGAAGGAGGAAGAAGTAGGGGAAGGGGAAGAGGAAGAGGAAGGGGCAGAGGAAGAGGGAGGGGAAGATAG 

Protein sequence (LotjaGi1g1v0202200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEENSRSVSEAGTVVLETLRGRGWCLEDTDQLKAIIVIQSALADDRSKVVDFVESELLNSDLRSIGAKSLPHPSLLRNPS SHLLGPKVLQISSVRDISKSSVGGSSGGRRLLRLCLTDGHSEITAVEYSHIPVIPDDVVPGTKIRLENKVAVHSGIACLN PKVLTVLGGVVESLYEEWQMNKKYSVFSRSSVRQLEDRDTGGPPSFVKLQVGSSSGYNSRSDKPIAVVGETEMRTTGIEQ NTKQKAEVLDVNLKSKLPPGRSDDKPSSSWTRQKEEYNSRGGKPIAVVGEAVMRPTSIQQNTNQEADMLDVNPRSKLPPE RADDKPSSSGTRPKEVVESVPVQNQAAAQKLLQKLNNPYQDGRNPKGWKHRGRGRQEDPVVFTLDEYEKRKSQAKPSIKD DVVDVSRDEDLAWQLQNQFNLEDSGVQRGSQETKAQDIRMSMFTYERDSDGSHSMFEGGRSRGRGRGRGRGRGRGRGR 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 14 478 465 1.9E-98
PANTHER 14 478 465 1.9E-98
SMART 16 106 91 4.5E-13
Pfam 45 101 57 1.9E-5
Gene3D 101 187 87 1.3E-23
Pfam 108 180 73 3.0E-17
MobiDBLite 232 380 149 -
MobiDBLite 234 248 15 -
MobiDBLite 257 279 23 -
MobiDBLite 294 309 16 -
MobiDBLite 314 331 18 -
MobiDBLite 342 360 19 -
MobiDBLite 364 380 17 -
MobiDBLite 444 478 35 -
MobiDBLite 444 464 21 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0202200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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