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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0205500 |
| Transcript ID | LotjaGi1g1v0205500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT4G12560.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9SU30|CPR30_ARATH F-box protein CPR30; TrEMBL-Plants: tr|A0A151UAW9|A0A151UAW9_CAJCA F-box/kelch-repeat protein At3g06240; Found in the gene: LotjaGi1g1v0205500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:44657986..44661156) extracted from Lotus japonicus Gifu genome v1.2.
TTCGCATTCAAGCAGTCATATATATGTTCGATGAGAGAGTATAAAATGAAATTAGGGATTTGCGAAATCACAATGCAGAG AGGTTAAAGGTCTCGCGCGTCTCAGCCACGATCAAAGACGTACCCCGTCGCGCATCCGTCGTCCCTACCGCCGGAGTGAC CCACCGCCACTGAGACCCTTCCTTTCATCGCTATCTCACAATCCCATGCCCAAAACCACTTCATTGTTTCAATTGCTCCA CTAGGTATGTGCCAATTCATTTTTTTCCTTCGTCTAAATGACTTTGTTTATTTCATACTTATATGCATATGCATGTCGAA TCTGGTACAAACCTGGTTTGCTAGCCTGCATAATCTGTCTGGAAAGTGTTGAAAAAGTAGATTCTTTCATGCTCTTTAAT TTAATCAACCATGTAATCAATCTGTTACTAAAAATTATTGTTGGATTTAATGTTTTGTGGGTTATTTGGTTTGAGTTTGT GCTTTCTCCTTATGTGATTTGGGTTGGATACTTGGATTAGCCTTCATGAGGCATAAGTGTGCTTTCTACTGACACAATTT ATCTGTCCATTGACAATATTTTCAGCTCTATTTGCCACCACTGCTAAAAAATGAACAACCAACGTCGAAGAAGGAGCTCA GAGAGCCTCAATCTCTCTTCCATTCTCCCGCAAGGTTACCGGTGAGATCTCTGCTTCGTTTCAAATTGGTGTGTAAGCCC TGGCTCTTTCTCATTTCCGATCCCCAATTCGGTAAATCTCACTATGACCTAGCTGCTGCACCCACCCACCGATGTCTGGC AAAACGTAATGATTCTGAAATTGAGTCCCTAGATATAGATGCAGCACTTTACAATCATGAGTCTTCTGTTGTAAACCTCA AATTTCCGCTTTCATCACCTCCTGGCGAACATAGTGATTATTTTCTTTACAACCCTGTTGATTTCTTGGGTTCTTGTAGA GGGTTTATACTTGTAGCCTATCGAGGGGGTAATATTATTATATGGAACCCATCAACCCGTGTCCAGAGAAGAATTGCAGA CAACCGTGAAGGGATGAGGTTTCTTTTTTTAAATGGTTTTGGGTATGACACATCAACGGATGACTACTTGTTTGTTTGTA TAGAAGTGATTCCTTGGGATACCTATATTTATAGTGAACAAGATCCAGACATTATAGCTAATCATCCTACTTGCATTTGC CTTTTTTCCCTGAAAACAAATTCCTGGTTTTCCCCAGAGGGTACTTATGCTCAATATGTGGATCTGCGCTATTGTGAATT CAGAGTTGGGTCCTTCTTGAATGAGGCTCTGCATTGGTTGGTTATCTCTGTTGAAACCAATAATCATGCAATCATTGCGT TTGATTTGGTAGAAAGGAGTTTGTCAGAGATTCCTTTGTCTCAAACTTTAGCCAGGGAATTAGAATGTAGAGAGTATCAT TTGCGGGTCATGGGAGAATGTCTCAGCCTATGTTGCCCGGGTGATCACTATGACGTGGCTTCAATGGCTGAGATTTGGAT GATGAAAAAATATAAAGTGCGGTCTTCTTGGACTAAGTTATTTGTTTTTTCTACTTGTAACATTCCCCACAACATGTTTT TTCCAATATGTTTCACCAAACATGGTCGTATTTTTGGATCAAATGGTGTTGACAGATTAATGATAGTTAATGACATAGGA AAGCTGCTTGATGAATGCACATTTGATACGTATAGAGCGGATTTACTTCATTGTGGTATGTATAGAGAGAGTTTACTATC ACTCCCTAATGAATTAGAGGAAACAAGTGAAGATGGACCAGCTGACGAGTTCCTTGGAGGAGACAAGTGAAGTTGACCAA TGGTATCTGACAATAAGAATTAGTGTATGTTATTCTTCATTCCTTTTCACCATTTTATTACTATTTATCATGCATAGTGA AAAATGAGAAGTCATATGTACAACACATGATACAAGAACATGATTCCTTAATCTATCGATTTACTTCAATGTGGTATGTA TAGAGAGAGTTTACTATCACTCCCTAATGAATTAGAGGAAACAAGTGAAGATGGACCAGCTGACGAGTTCCTTGGAGGAG ACAAGTGAAGTTGACCAATGGTATCTGACAATAAGAATTAGTGTATGTTATTCTTCATTCCTTTTCACCATTTTATTACT ATTTATCATGCATAGTGAAAAATGAGAAGTCATATGTACAACACATGATACAAGAACATGATTCCTTAATCTATCTTGTA CTTTCTCCGTCTTAAGTGATTATATTTCTTTCTAAAAAAAAATAAGTGTGACAAAAGAAATTGCAAGAAAAGAGGAGTCT TGGTGGTGGACGAAATTTATAGGATAAACATTTGATGTCGCCTTTTCTTAGAATAATCGAAGACAATTTTGGTGGTAAAT TATATAAGGAAAACTACTAAACCCTGTGTTTAAATAATAGTTCTCTGACTAAGATCCTATAGAATTTGTAATATATTGAC ATTTAAAATAAGCTCATCTTTTCTAGCAGGCCATGAAGGGTGCAAGAGTGATCTACAGTTATGCTTGATGTCTTGGCTTG CCTTCAAATGATGATAGTGCAAGAGGAGAGCTTAGCATTTGGAAGAGAATGTTATTTACACAATGTTAAATCATCTCGCT TTAGTAGTGTTTGCTTTCTTGTGATTTCAGTAAGTTGGAGTCAAGGCTGTCTTTTGAACTTAATTATTATGAGTTATGAT ACCCTAGCTGGAGTTTGGACATGCTATTTAGCATCTTTATATTTTCTCCTCTTAATTTTGTTATTGTAGTTGTTGTTTGT TTCTGTTACCATTTACTTGGTTTTCAGGTTCAATCTCTACTTATTTGTACTGTATTTAGGTACCTCTTTTGCAAGGTATT GTGCTGTTACTCATTTTAAGTTGAAGTTATGGTGATAATGTCAATCTTAATCATTTCACATGTGGTCAGTTTAACCCCTT AATCATACTGATGTTCATGAGGTATCTGTCATGCAGTTTCATGATATCTGCAGACATACTTTCATTGCCACAGCGAACTT GCGTTACGTGCAAACTTGCTTCTCTTTTCTTTTTGATTTTGGTAAAAAACTTGACTTATTTGGACCGGTTAATATAAGAA AAATATGTATATGAATAGATAAACAGTAATGGCCTCGTCGGGGCTTTGGAT
CDS sequence (LotjaGi1g1v0205500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGTTTCTTTTTTTAAATGGTTTTGGGTATGACACATCAACGGATGACTACTTGTTTGTTTGTATAGAAGTGATTCC TTGGGATACCTATATTTATAGTGAACAAGATCCAGACATTATAGCTAATCATCCTACTTGCATTTGCCTTTTTTCCCTGA AAACAAATTCCTGGTTTTCCCCAGAGGGTACTTATGCTCAATATGTGGATCTGCGCTATTGTGAATTCAGAGTTGGGTCC TTCTTGAATGAGGCTCTGCATTGGTTGGTTATCTCTGTTGAAACCAATAATCATGCAATCATTGCGTTTGATTTGGTAGA AAGGAGTTTGTCAGAGATTCCTTTGTCTCAAACTTTAGCCAGGGAATTAGAATGTAGAGAGTATCATTTGCGGGTCATGG GAGAATGTCTCAGCCTATGTTGCCCGGGTGATCACTATGACGTGGCTTCAATGGCTGAGATTTGGATGATGAAAAAATAT AAAGTGCGGTCTTCTTGGACTAAGTTATTTGTTTTTTCTACTTGTAACATTCCCCACAACATGTTTTTTCCAATATGTTT CACCAAACATGGTCGTATTTTTGGATCAAATGGTGTTGACAGATTAATGATAGTTAATGACATAGGAAAGCTGCTTGATG AATGCACATTTGATACGTATAGAGCGGATTTACTTCATTGTGGTATGTATAGAGAGAGTTTACTATCACTCCCTAATGAA TTAGAGGAAACAAGTGAAGATGGACCAGCTGACGAGTTCCTTGGAGGAGACAAGTGA
Protein sequence (LotjaGi1g1v0205500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRFLFLNGFGYDTSTDDYLFVCIEVIPWDTYIYSEQDPDIIANHPTCICLFSLKTNSWFSPEGTYAQYVDLRYCEFRVGS FLNEALHWLVISVETNNHAIIAFDLVERSLSEIPLSQTLARELECREYHLRVMGECLSLCCPGDHYDVASMAEIWMMKKY KVRSSWTKLFVFSTCNIPHNMFFPICFTKHGRIFGSNGVDRLMIVNDIGKLLDECTFDTYRADLLHCGMYRESLLSLPNE LEETSEDGPADEFLGGDK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 234 | 230 | 2.1E-42 | – | |
| PANTHER | 5 | 234 | 230 | 2.1E-42 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0205500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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