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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0208700 |
| Transcript ID | LotjaGi1g1v0208700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING-H2 group F2A; TAIR: AT5G60840.1 hypothetical protein; Swiss-Prot: sp|B4S9B9|DEF_PROA2 Peptide deformylase; TrEMBL-Plants: tr|I3S274|I3S274_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0208700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:45766373..45770199) extracted from Lotus japonicus Gifu genome v1.2.
TTATTTATTTTGTTGTTGTTGGTTGAAATTGAGTGATTGCATTGGCAATTGGAAAAATGCAAAAGCTTAAAAGCAGATTC CAAAGTTGTTGAGTTTCGGAAATTCAATTCAATTGTGATCAAACAAGAAGAAGAAGAAGAAAATGGCAAGCGTGCCTTCA CCTTCCCCACCTCGCCGCGCGCCTCCACCTGCCTCCGATTCCGCCACCTCCACCGCCGCTCACTCCCCTAAGAACCAGGT GAGGTTACTTCACCCTTCTCTTCTCTTCTTTTCTCTCTCTCTATATGCTTCTTCTTCTTCTTCACTAATTGTTTCGAGGG TTTTCTCAGGTGGAAGTAGCTCCCAACAATGGAGCTTTCCATGGAGATGAAAAGAAACCTGACTTTGCAGATGCTCTTGA GTAACTCCTTCTTCTTCTTCTTCTGCTGCTGTTTTTTTTTCACTCTCTCTCTCTTGCCCTTATGTAACTGTAGATATTAA GAAGTTTATTGGCTTCAAATTTTGTGAAGATCATGAACTGAAAAAATCTTTTTTATTAAAAAAAATTCATAGCTGTTAGA AATTCTAAGTAGCTTGAATACCTAGTGGTACTTGTATTTCAGCAATGACAACAGCTGTTTTTACAATGGGCATGCTTCAA ATCACACATTATATATATATTGTGTTCATCAGTTAATGGATCTGTGTATTTGATGTCTTCTGTGTGTTTTTTGAACACAG GGCTAGGCACTACTGTAATTTGTTAATAGTAGGTGTTGGTTGGTCAAGAAAACAGTGCACTCTCTTCTGACCTTCAGTGA TGCAAAATGCAATATGGAAAGTATTTAAGAGTAGAAATATATACATGTTGGTTTGACTAAAATGCCATTCTATGAGGGCA GTGTTGACTTTTTATCATAAACTAGAAAACAGAATCCCCTGGCTGAATTTCTCAGAGTTTATGTAGAATGGATATATATT AACAGCATGTTTGTCTTGTGTGGTTCCTTTATAGAGGATCTTAACACCATGACCTTAGAAGATGAAATTAAACAACATAG ATGCACCCGAACAAGTATCAATACTTGTAACAAATATTACAAAGATGCGAAAAGTAAGAAACAGCAACCTGGTGCTATAT AGCTCCTGCTGCGGCAGGATTCTGAAAAGGGTTGGACCCATCGTGGGTCTATTGTAGACAGCCTTATGTTGCATTTACAT GAGGCAGGCTGATTCCACAACTCAAACTTGTAACCTCCTTGTAATATAAATTAGGGTATGTAAGAGCATACCAATGAGAA TAACCAGGAGATAAGAGTAGGAATTCAGGGAAATTGCATACTGCCTCATTTCCAGTTCTGCAATGTTCTTGTAGGTCAAT TACTCAAGTTTAGGAGACTCAACTTTTCCTCTCTTTCCTAGGGCTTTATGACTTTATCTTATCTATGGTGATAGTGTGAT CAATGGTAGATGTAGTTCAAACCAATTTTGAGGTGTTGATGAAATGCAAAATTACAGTCCTGCTGTTGGAACTGGCACTG CTATCTGTATACCAAAACAGTTCATGTATATACTCCATTTCTTCCTTTCTGCAGAATGAAAATCTAATTGGAACCCATTA TTTTTTTTAGCAGTCTGTGAGCTTAAATGAAAGCATAACACTCCTAAGCTGTTTGGATAAGCGTTTCAGTTCGCACAAAC GTGGAAAAACGCATTCCAACGCATCAGATGCCAACCCAAAACTTTATTGCACTATGTTGGAGGCCCATTTGTGATTTGAC CATGATGAAACATAGGAACAAAATACTTTTGATGATATTAGTTCATGTGACTAAGCTGTTTGCCTTTTATGTTGTGGTTA TAACTTAGTCACACTCTAGTCTTTGGTGCATGTGGGCTTATTCTTAGTAAAATTTGCAGTGACTCTTCTTGGTTGGTTTT GTTTTATATAATTGCTAGTTTAGTTTCCTCCACTGAGTATTAGTTTCTAAACTGAAAATACAATTTTTTTTATTTCTCTA TTATCTGTTTATCCTGCCTGTATTGTCTAATTCTAATTCCTCCTTACCATAATGGTTGGAGAAACTTGTGTCATTTATGT ATCTCATATCGCACAGAATGAAATCTCCCATGGATGTCTTTACATTAATGCAAATGTTCATCTGAAAGTGTCGGTTACGG CGCCAATAGTTTGTACAATATGCACAATCGCAATCACCACCTCCCTTTGAAGCTATTCATTCCAACAGAATTAAACTTCC CTTTCATTTGTTTATATTCCAGTATGAAAGAAGCTATTCTGGAATGCTCAGAAAATATGTACCTCATTTTATATGACAGA ACTCTAAAATCTTTGGATGCAACGTGTTGTTTGCTGCAAATTATTTGTGAAGATTAACCATAATACCATATGCATTTTAC AGTCACCTGGACGGCACACGGTACATTGAGAGGTTCAGTAAATATGATGACGAATACCGTAGACGTCTGTTGGAAAAATA TTTCTCTGGAAAAATTAATGGAGGTATGCACAATAGCCATTTAATAGGATATGTTTGGTCTCTCTTTCTCTCTCTCTCTC TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGCACTATATGGTTGCTGCTTTCAATGCTAGATTTTGTGA CTAGTATTACAGTTTCTTTGATATAGGGATGAAGATATACATATAATGTCTTGCATTAAGTTGTGGAGTATTATTTTAGC ATCACTACATAATTAACCTATATGTATTAGAATATAATTCTGCACTGCATGATCTCTACTGCAACTGGTTTTGTGCTTAT TTCCTAAACATCAGAATTTAATTAAAGCATTCATGTTTTTAAAATATCAAAATGAATATAAAGTGCTGAAGGTTAACAAA ACAAGTGTCTAGACTATTTTGTTTAGCATTTGTCTCCCTTCTTTGACACAAGTGCATGACAACAACTCATAAAATTAATG GAGTAGTGTTGTACTGTTGGCTACAGAGTCCAGATAGAAACGAGATGCATAAGTTCTTGCTTTGTTTCTTGCCCACTTGA CATTGAGTTTAAATCTTTGTTTTGTATGTTGAGATATAAGTTTTAACTTAGACAAAAAAATCCAGTTTCAATTGATAGTA ATTATCACTTTTCGCAGGCAACATAATTTATGAGCAAATAACAGTACGTGGTGAAATTATAAAGACAAGCAGGTAAGCAT AGGGGATGAACCATCTTGCATGTTCCATCCAATAATGTGAATAATTTTCTCTAACATGCCAGAAACTAATCCGTGCACGG ACATCTTTGTAGGTTGCCTTGTTTAAGGTCATATGCGGATCCTGTTGTAGGTTTTGAAGACCAATTCAGCAATGGATCAT CCCCACCAGTGGACACACAAGCTAACATTCCTAATGGCAAACACATGGTGAAGAACAATTGAATTTTTTTTACATGGAGA AGCATCAAGGAACTATTTTCAGGAATTCTGGAACCCACACCTCTGAAAAGATGGTTATGGGCTCAAAACCATCAATTTGC CTAAAAAGGATTTCCTGGTCGTGATTTTTATCTGGTTGTAATCATGTGTAAAATCTTGCGATTCATATGATTCTGCGATT CATATGATTCTGTTTGTACTAATCACAAAGTAAATAACACCCATTGTTTTATTTTCCATTCTTGATCCATTTTCAATTTC CAAATTCTTTCGTAATCTCAGTGGCTGCGATCATCAGTGAAGACCAGCTGGAGTGGAACGCGCCTCACAGCTTATATTTT CTAGTGTCAAACGGAAATCCTCGCACCGTTTAGTTTTTTTTCCAGTTAAATAAAAACTTTGGATGGG
CDS sequence (LotjaGi1g1v0208700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAAGCGTGCCTTCACCTTCCCCACCTCGCCGCGCGCCTCCACCTGCCTCCGATTCCGCCACCTCCACCGCCGCTCA CTCCCCTAAGAACCAGGTGGAAGTAGCTCCCAACAATGGAGCTTTCCATGGAGATGAAAAGAAACCTGACTTTGCAGATG CTCTTGATCACCTGGACGGCACACGGTACATTGAGAGGTTCAGTAAATATGATGACGAATACCGTAGACGTCTGTTGGAA AAATATTTCTCTGGAAAAATTAATGGAGGCAACATAATTTATGAGCAAATAACAGTACGTGGTGAAATTATAAAGACAAG CAGGTTGCCTTGTTTAAGGTCATATGCGGATCCTGTTGTAGGTTTTGAAGACCAATTCAGCAATGGATCATCCCCACCAG TGGACACACAAGCTAACATTCCTAATGGCAAACACATGGTGAAGAACAATTGA
Protein sequence (LotjaGi1g1v0208700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASVPSPSPPRRAPPPASDSATSTAAHSPKNQVEVAPNNGAFHGDEKKPDFADALDHLDGTRYIERFSKYDDEYRRRLLE KYFSGKINGGNIIYEQITVRGEIIKTSRLPCLRSYADPVVGFEDQFSNGSSPPVDTQANIPNGKHMVKNN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 48 | 48 | - | – | |
| MobiDBLite | 1 | 16 | 16 | - | – | |
| PANTHER | 3 | 149 | 147 | 4.6E-42 | – | |
| MobiDBLite | 17 | 35 | 19 | - | – | |
| MobiDBLite | 126 | 150 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0208700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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