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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0210700 |
| Transcript ID | LotjaGi1g1v0210700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Alpha-1,4-glucan-protein synthase [UDP]-forming]-like protein; TAIR: AT3G02230.1 reversibly glycosylated polypeptide 1; Swiss-Prot: sp|Q6Z4G3|RGP3_ORYSJ UDP-arabinopyranose mutase 3; TrEMBL-Plants: tr|I1KD37|I1KD37_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0210700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:46187804..46191955) extracted from Lotus japonicus Gifu genome v1.2.
CTCGATTGAGCATCTCACGCATGCCCCCCTGCCGGCATGTGGCAAGTTCCATTGGTTTCAACTTTCAACTTTCAAATACA AAACAAAACCCCCTCTAACCCCGCAAACACAACGACAACAACACAAAACAACATCACTCCTCGTCCAACCCGATCACCAG CAACAAGGAGAACAAGAACATTCTCTCTCTCACACTCTCTCTCCATTGAGTCTACAAAACCTGCAATCTGAGGGAGCAAA GAGAAACAATCAACCCATCAACCATGTCAGGCGCATCATCAGCAACTCCCGTTCTGAAGGACGAGCTCGACATCGTGATC CCCACGATCCGCAACCTTGATTTCTTGGAGATGTGGAGGGCATTCTTCGAGCCTTACCATCTCATCATCGTGCAGGACGG TGATCCAACCAAGACCATTAAGGTCCCTCAGGGCTTCGACTATGAGCTCTACAATCGCAATGACATCAACCGCATTCTGG GTCCTAAAGCATCTTGCATTTCCTTCAAGGACTCTGCTTGCAGATGCTTCGGCTTCTTGATGTCCAAAAAGAAGTACATC TTCACCATCGATGATGACTGCTTTGTAAGTCCCACATCGCTCAACTAGATCTCCATGTGGACCTTCTGATCAATTTCCTC TGTTTTTGTGATATTTTTTTTTAATAGTCAAAGTTGGTCTCTAATTCTCTATGCATGTCAATGTTTATGTTTTTTTTGTT GTTTTATTTTCTGTGTGTTGTTATAGGGATGAATTGAAGATGTTAATATCTAATTGAATAAAAGAATAGCGCACCACTGT TTGCATTTTACCAATCATTTTTGTAAAACAAAATTATCATTGGAGTGATTTCGTTGAGGTTACAGAAAACGGGTAGGTGA TTTTTTAGAGCTAGTTTGGTTTGAAACTTGAAAAAATAACACATCCAAATGTACTTCTTGTTAGAGTAACAACTTTTTCG ATGAAGAAAAAGTTTGGGTGAGTTGGGCACTTCGGCACCGGTCACTACTATGGTCAAGGCATACCTCTGGATCTATAGGT CGCTTATAGACTACTTACATATACCCACCAACACAACCCTCACATCAGCAGCGAGAATCGAACACACAACCTTCTCAGAG GAAGTGATTCGTCAGCAAACTGACCGAATATGTTTTGGTTTTAGAGTAGTAACTTGTCACTTATAAACAAAACTATCTAG CGATATGTTATTTTTCTCGGTTTTCACATTTTCTAGTGGTGAACCAAACTGATTCTTAGTGTGATATATGCTGATATCTT TGCTGGAAACTGACATGATCTATGTTATTTCCTTGGTCTAGTTCTGTAAACCATGGCAATGTGGGTAATTAAAATAAATA ATAATAATATTCTTTTTGGTAATTTCGTCATAATTCTGGGATAATAATATTCCTTTTTAGACATCATTTAGATTTTCAGA TCTCTGCTTTTTCTCTTTGATGCTTTGATTTCTAATGGATTTTATCGAAATTGATCGGCAACATAAGATCTGGGCCAAAT TCATACATGGAACATGAAACCATGTTAGCAGGGTTTAAATTGCGGTTGCAATTGTGGCCACAACGTAACGGGTGTTGCTG CCTTCTCATTGGCATCACGACCGCAATTGTGGCCTCATCAACCTGCATTTGTCCCAATTCCGTTACGCAACAGAAGCCAC AAACGCAATTTAAAACCCTGCATGTTAGGGATCAGTCATATTGTAGCTGTTTGATTTGTTAATTTGAACTCTGAAGTGTT ATGAAAGTGGTTTTTTATTGTCAGATCCTTCCCTGGACTGAGTTATCTATTTTTTGTTTTCTCAATTGTTTTCAGGTTGC GAAAGATCCATCTGGCGCTGAAATTAATGCCCTGCAGCAACACATTAAGAACCTTCTGACCCCATCAACCCCATTTTTCT TCAACACTCTCTATGATCCTTACAGAGAAGGTACTGATTTTGTTCGCGGGTATCCATTCAGTTTGCGTGAAGGTGTCCCA ACAGCAATTTCTCATGGCCTCTGGCTCAACATTCCTGATTATGATGCCCCAACTCAGCTTGTCAAGCCTCTAGAAAGAAA CACTAGGTATCTAATTGGCAGCAACATTTGCAGCATTTCATTTTTTTTTTCTGTTAAGGTCACATCTTGTTTTCGAATGT AGTTTACTGATGATACCATGTTTCAATGCCTTTGTCAGGTATGTGGATGCAGTCATGACAATTCCAAAGGGAACCCTCTT CCCCATGTGTGGTATGAATTTGGCCTTCAACCGTGAACTAATTGGTCCTGCGATGTACTTTGGACTCATGGGCGATGGGC AACCTCTTGGGCGCTATGATGATATGTGGGCTGGGTGGTGCATGAAGGTAATCCTAACTTCTATTAACTGCATTCTTGGA AATCCTTTCTAAAACCAGAATCAACTTTAGGTAGAAGTTTTCCTTAAGCATGACAGATCTATGAATTTTGAGTTGTGAAA GACAATATATTTAAATTTATTGTTTTAGAAAAATAACATTAAGTTCTTTAAGAGTCACGTGAGAAGCATGTGACTTGTCC AGTCATCAAGCTCTCTGAAGAAAGACACGTGAGACACGCGTAAGGGAGCCACATCAGCTACTCACGTTAGTTTTCTCAAG GAAGACAAACGACAGACCAAAAGTGCAACGACATGTATAGTTGGAGGACGTTTTTTGCTAATTGTGAAGTGTGGGGATGA TTTTCGCAGGAAGGCAATAGTTGGGGAACCAAAAGTGCAATTAAGCCTTTATATTACTATAGATATTGAAGTAATGTATT TAAAGAGAAATGAGAATATTAATGGGACCACAATATCCCCTGTAGATCCACGCCCATTAGCTTATAAATTTCAGAATTGA TTCTTAAAAAGAGAAGCTGATTCTAACTTAGGCAATGTGAGACTAGGGACTTTTGAAGTACTCACATTTTTCCTCAACTT CTATTAAATTTCCTCACTCACTCCTCAGTGCTTGTGATTTGTGATGACTCAAATAGAGACTCCTTTTGTTGATTATGCAG GTCATAAGTGATCATTTGGGACTTGGGGTCAAGACAGGTTTGCCTTACATATGGCACAGCAAAGCTAGCAACCCTTTTGT GAACCTTAAGAAGGAGTACAAAGGGATTTACTGGCAGGAAGAGCTGATCCCATTTTTCCAATCTGTTTCACTTCCAAAGG ATTGCACAACTGTGCAGGCATGCTATGTTGAACTCTCCAAGCAAGTTAAGGCAAAACTTGGTGGGGTTGATGAGTATTTC AACAAGCTTGCAGATGCCATGGTCACATGGATTGAAGCTTGGGATGAACTAAACCCATCTGGGGGGAAATCTGATGCATT GGTCAATGGTGTGGCGAAGTAAATTGTTGACATGTGCGGCTCTAGGGATATAAATTATTGGGAAAGGCAGAGGATTTGGT TATACTTATCATTTTACTCTTTTTTTTTTCCATAGAATAATAAAATTTGAGTGAAATTTCAATTTGTATCTTATTATATA TTTTCTACAGGTTGGAATTAGCTTATTATTTATTCGACTGAGCATGTTAACTTTTAAATTTCATATTGAGATTATTGGTT TTTGGATCCTGCGGTCTGCCTTGATCGTTTAGTTTTTATTGGATTGAATAGTTCATTTAGCCCTTAAATATATGTGGTTG GTCAAATTAGGGGCTTTTTTTTATTACAAGAACAAGACTAAAAGGAACGGAATTAAGCTACAACATCAAAACAAAGGGAA GCAATAACAGTAGAGGTGGAGACTTCCAAAGAAGGCGAGCGAAGCCATCTCTAGAAGTCTGACGGCCAAGAAGTCTGCTG CATTCTTTCTGGGGATATGAACCTCGGAAACCTTCCAAGCTCTATTAATCAAAACTCTTATACGCAGGATTGTATCTTTG CAACTTAAACAACAAGATTTTTTAAGTACTTTAAGCGTCGGTTCATTTTTCCCGTTCTAACTTAATCTCGAGTTTAGGTT CAGTAACTTGTCCAAGAGTAACTCAGCCACTTAAGCTTGTTAAGCTTCATGTTTAGGACTTGACGGGAGGTTTCCTACCG GGTTTCAAGAACACTAACCCGAACTCCATTAAGCTTGACGCTTGAGACTTGGAGGGCTATGTACCAACCGGG
CDS sequence (LotjaGi1g1v0210700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAGGCGCATCATCAGCAACTCCCGTTCTGAAGGACGAGCTCGACATCGTGATCCCCACGATCCGCAACCTTGATTT CTTGGAGATGTGGAGGGCATTCTTCGAGCCTTACCATCTCATCATCGTGCAGGACGGTGATCCAACCAAGACCATTAAGG TCCCTCAGGGCTTCGACTATGAGCTCTACAATCGCAATGACATCAACCGCATTCTGGGTCCTAAAGCATCTTGCATTTCC TTCAAGGACTCTGCTTGCAGATGCTTCGGCTTCTTGATGTCCAAAAAGAAGTACATCTTCACCATCGATGATGACTGCTT TGTTGCGAAAGATCCATCTGGCGCTGAAATTAATGCCCTGCAGCAACACATTAAGAACCTTCTGACCCCATCAACCCCAT TTTTCTTCAACACTCTCTATGATCCTTACAGAGAAGGTACTGATTTTGTTCGCGGGTATCCATTCAGTTTGCGTGAAGGT GTCCCAACAGCAATTTCTCATGGCCTCTGGCTCAACATTCCTGATTATGATGCCCCAACTCAGCTTGTCAAGCCTCTAGA AAGAAACACTAGGTATGTGGATGCAGTCATGACAATTCCAAAGGGAACCCTCTTCCCCATGTGTGGTATGAATTTGGCCT TCAACCGTGAACTAATTGGTCCTGCGATGTACTTTGGACTCATGGGCGATGGGCAACCTCTTGGGCGCTATGATGATATG TGGGCTGGGTGGTGCATGAAGGTCATAAGTGATCATTTGGGACTTGGGGTCAAGACAGGTTTGCCTTACATATGGCACAG CAAAGCTAGCAACCCTTTTGTGAACCTTAAGAAGGAGTACAAAGGGATTTACTGGCAGGAAGAGCTGATCCCATTTTTCC AATCTGTTTCACTTCCAAAGGATTGCACAACTGTGCAGGCATGCTATGTTGAACTCTCCAAGCAAGTTAAGGCAAAACTT GGTGGGGTTGATGAGTATTTCAACAAGCTTGCAGATGCCATGGTCACATGGATTGAAGCTTGGGATGAACTAAACCCATC TGGGGGGAAATCTGATGCATTGGTCAATGGTGTGGCGAAGTAA
Protein sequence (LotjaGi1g1v0210700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSGASSATPVLKDELDIVIPTIRNLDFLEMWRAFFEPYHLIIVQDGDPTKTIKVPQGFDYELYNRNDINRILGPKASCIS FKDSACRCFGFLMSKKKYIFTIDDDCFVAKDPSGAEINALQQHIKNLLTPSTPFFFNTLYDPYREGTDFVRGYPFSLREG VPTAISHGLWLNIPDYDAPTQLVKPLERNTRYVDAVMTIPKGTLFPMCGMNLAFNRELIGPAMYFGLMGDGQPLGRYDDM WAGWCMKVISDHLGLGVKTGLPYIWHSKASNPFVNLKKEYKGIYWQEELIPFFQSVSLPKDCTTVQACYVELSKQVKAKL GGVDEYFNKLADAMVTWIEAWDELNPSGGKSDALVNGVAK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 353 | 350 | 5.2E-240 | – | |
| PANTHER | 4 | 353 | 350 | 5.2E-240 | ||
| PIRSF | 5 | 349 | 345 | 1.4E-195 | ||
| Pfam | 11 | 345 | 335 | 1.2E-177 | ||
| CDD | 17 | 111 | 95 | 0.00167427 | – | |
| SUPERFAMILY | 17 | 245 | 229 | 1.13E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Intramolecular transferase activity | Catalysis of the transfer of a functional group from one position to another within a single molecule. | ||
| Biological process | Plant-type cell wall organization or biogenesis | A process that results in the biosynthesis of constituent macromolecules, assembly, arrangement of constituent parts, or disassembly of a cellulose- and pectin-containing cell wall. |
Expression pattern of LotjaGi1g1v0210700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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