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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0213200 |
| Transcript ID | LotjaGi1g1v0213200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding protein; TAIR: AT5G61030.1 glycine-rich RNA-binding protein 3; Swiss-Prot: sp|Q9FNR1|RBG3_ARATH Glycine-rich RNA-binding protein 3, mitochondrial; TrEMBL-Plants: tr|A0A0L9TRW2|A0A0L9TRW2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0213200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:47047803..47056276) extracted from Lotus japonicus Gifu genome v1.2.
GACGTGTCATTATTTCTCCGCCAATAATCAAGGGTCGATCGTATCTATAAACCCTTGTATAAATATACTAGGGTTTAAGG GTTTAAGCAGAGCAGCAACGAAGAAAATTAAACAGAGAGGAAGGTACGTTCTCTTCCACAAACCCCTAATCAATATGAAG TTTTTTTTGCTTTTCTCCAATTTGCTTTCATTTATAACAACACTCTTATGAGGGTTTTGGTGGGAAGAGACTTATTAATG ATAATCGTTTATGTGAAATTATTAATATTGTTTCAGTAAAGAACCTTGAATTGTAAAGTGTTCGTTGCAAAAAAAACAAG GAAATCTTTTTATTTTTGGGTAATGAGTCAGGGTTTAAAGAATCTGGAAGATTAATCTTTTTATTTTGGGGGCGGCTGGA ATTTGACAGATGCGAGGAGGAAGTTATTCGTGGTATAGACGAGGAATTGAGGGAGATGCAATCTTTTTGAGCAGCATGGT CTCCTTGTGCTTGGTTTTCGGTTTGTCTTGGTCTCGTTCGTAGGTGGGGTTTTTTTTTGGGTAATTTGTGGTGGGTTTCT ATATCATGTGGAACATTGAGGGTGATTTTGTTTTCAATTATTTCAGGTTTCTTTTTTAGGTTTTCATTTAGGCTTGGCGG ATGGTTTGTTTTTGGTGTTTTCGGGGTCCTGTCTTTGGGTTTGGGAGATTTTGTATTTTCTATATCTCATTTGAGGGGCT GTCCTCATCCTTTTCGATAATAATACACTTTTGCTTTTGAATAAAAAGAAATCTGGAAGAATTTTATATTGGTTTATTAA TGTTTCCTTAATGGTTGTGTTGAAATTTTGGTGTATTGATGTTTGGGGGTAACCCGATGTTTGGTGTAAAGATAAATTGT TCAAATTTTATGTATATATTTAGAATGTGAAGTACGGAATATATGTTCAACACTTATAGCTTCTCTCAAGTTGCAGGAAT GGCTTTATTTGGAAGAGTTGGGAATATACTAAAGCAAGCAACGACTAGGAAGATCAATTCAGAGTTATGTTCATTCCCAT CTGGTTTCCAGGCTATACGGTGCTTTTCAAATTCTCCAAGTACTAAGCTGTTCATAGGAGGTGCACTTGAACTAGCATCT ACTCCTTTTTGCATCCTTGAAGTTGTTTATTTATGCAATTTTTTTATAGTTGTTGATGAATGATGATGACTGAAAATGAG TAATGTACATTTATCTATTGCAGGTGTTTCATATAATACTGATGACCAAAGTTTGGAGGAAGCTTTCTCAAAATATGGTC AAGTTCTTGATGGTAACTTGTTAGATCCTCTGCTTTTTTTTTTTGTTTATTTTTTTCTGGGGGACTACAACGTAATCCCG TTAAAATCCTTTATTTAATTTAAGTGTGTATTAATTTCTGTTTAATCTCATGTTTTTTGTAGCTAGGATAATTAAGGATC GCGAGTCCGGTAGGTCAAGAGGATTTGGTTTTGTTACTTTCTCTACTCTTGAGGAGGCATCAAGTGCCATTCAGGGAGTG GATGGACAGGTAATGCAGATTGTTACTCTAGTATTAGATTTCATTATAAGTAATAAACTGCAGAGTGATCGCATACCCGT TCCGTAACTCATTCGTCTGCTGAAGCTAGATAGGTAAGCCATTGAATTTCTGGAAGCACTTAGCCGTAGTTAGGCGTTTA ACTTTATGTAGTATGCACTTCTGTGACAGTCAGTGCTCGTGATTGAAATATTGCCTTTTAGTCTCTTGTCCTTGGAATTT CAGGGGTTGTTTCTCAACCTACCTAATTTTCTAGGTTATGGATTATGCTTGTTGTAAGGCATTTGGGTCCTGATTGACAC TTGTTACGAAATAGTGTTTTCTCACAATATTTTCATGTTCAACTGTAAGGTTTAGTACATATCCTGGCAGTTAGAATATA TATATGCGCTCAGTCAATATTTTCATCGTCAAGCACTTATTATAACACATCCACTTGTATTTTATTTGTAAATTTTCAGT AACTTATCTCTGATGGCATTAGCTAGTTTATAACTTCACCTGTAACGCATAATATCTTGGTAGTTTCTGTTTCATACTTT TCAATCCTTCATAGAGTCACTTCATGTTAATTTTATTTTGCAAATATAATGATGGACAATGTTACTGTTACCTTTCTTAT TATTACTTCTTTCTGAATGTAATTTTATTTTTCAGGATCTACATGGTCGTCAGGTTAAGGTAAATTTTGCTAATGAAAGA CCCCGTGCATATCCAGGTAGTTACGGTAACTCTCCATATGGGAATGCCGGTGGCAATGCGACTGGAGTTTTAAATACTAC TGGATATCCTGGAGATGTCTATGAATCGGATAGCAATCCTGGTAACCGTGCTGGCAATAACTATGGTACTGATGACAATA CCAGAAGTTCTGGTGGTGGTTATGGTTATGGCAGCTTTCCTAGTGGAAACACTTACAATGATGGAACTAGTGGAGGTTAC TGTGTCAACAATGGAAATTATGCTGCTGCTGCGGGTGTTGGAGAGAGTAATACTGTTAACTATGGTAGTGCTCCTGGTGG TGGTTATGGTAACTACGGCACTGCTGCGCCCGGAATTGGCAATCGTTATAATTATGACAATTCTGCTGTATTTGGCAGCA GTGGTAATAATTTTAATGTTGCTGGTGGTGGCAGCAGCAGTGAATACCCTGGAAGTGCCATGGGGTATGGTACCTTTGGT ATGGGTACTGGTGGTGACTTTGGTGGTGGTGCTGGTGGTGGTGGTGGTGATGGTGGATGTGCTTAAAGTTGGGAATTGGG ATGCAGCAGCAGTGGCCAACAGGATAGCAATCAAAGCAACTTTGGTATTTGATGCTGTGTTCCCTGTACCCCCTCTAAAA GCATGTTTCAGTCAGTAAAATAGGGCATTCTTTTGTTTTAGATTTTTTCTTTTATTCAGAAACTTTTATTGCATTAGGAA TCCACCATCAATTGTCTTTTTTTTCATATATACTCTCATTTAACAATTATTTTAGAATTATCCAACCAATTACTATAAAT ATTACATATTACCTCTTATTTTTACCTATGACCAATGTCACTAATTACTCAACAATTATCTTCATTCTCTTTGATATAAC TCACTTTTTTAATAAGGGTATGTTATTAAAGTTATTTATCAATTAAAGTGCGCATAATCTTAAATAACTAAATATTAGGA CGGGAGGTAGTATTTGATTTATAGATGTGAAAAGATTAATCCCTAGAGGGTACAATTTATATTTTCAATGAATGATAGTT CAAGTGATAGGAGCTATGGGACATATGAGTTAGGTAGGAGGTCCAGGGATCCAGTAATCAATCCTTGAAGGTGGAGGGTG CAATTTATATTTCTAATGTAACAAAAAAAAATTCTCAAAACAATTTCTAAGCTACATCAAGATTAATTTTAGGATAATAT CATTAAAGGATTTGTAACAAATTTAGGAAATAATCCTAACAAAGTAGGGGTAAAAATGGGGGTGTACAGGCAAGTCGTGA ACTGCATTTCACCGTTTTGTTTCTGGCTTTCTGCCACTTGTAGTTGTAGGGTTATGGTTGCTATTTCTTTTATGGGTTAA ATATGTTTCCAGTTCTCTAAAATATGGATGAGTTGAATCTGGTCTCTAAAAATATAGGACGGCAGAAACAACTCAAGTGG AGGGCTCAACGCAGACCTTGTGCATTTTAAGGCAAGGAACTCCACAGCAGGGAAAGAGGCTTTACAGATATAACAGAACA AATTATGAAAAAATAAGGTCAATACGAAAATACTACTCTTTTATATTCCTACATGCCTACAAAATTGATATCAATGTTCA TCATCATCCATAGAATACAACATCTTTTGTGCATTTTGAAAAACAGAAGAACCTTTCTTAGACCTTTCAACAATTTGCCT AATCAATTGCCTTTCCACCTCATTATCACCATCACAACTTTCATCTCCTATATCATTTAACTCATAGATCCTAGAACTTT GACCTTCGAACATTGTCACCTGGGTAGAAGAGAGCTCCCCTGAGAGTCTCCTTCCATTAATTGTTGAGTAAGGTGTGGAA CAATTTTCTCCATCATGCTGAACCTCTAAAGCATTCCAATCAAGTGAATGCAAACCTTCTTTGTGGTCACTATCATGGGT GCCTGATGGTGAATTTTCTTCAGAGTCATTTATCCTTATTAGTTCTTCATAGGCCTCATTGTATGCATCTAGAGCTTCAC CTGATAAATTGAGGACTAAAGGCTGTGACATAGTGTCACAGTCTTCATAAGTGAACAGGTTTCCACTAGTAAGGGAATCT CCCTTCTGTGAATTACCCTCACGCTCTGATTCCATGAGCCGTATTTTCCTCTGGCTGTTTTCAAGGGCACTCTCAAGCTC TTTCACGCGTTGCTCAAGTTGAGATTGTATAACTTCATGCAAACGCAAACTCAGCTCATGAGGCAAAACTGCATAGTTTC CAGGGAGAGGTGTGGTGTCGTTGGCAACCTCATTCGATTTTGGATGTACAAAGTTTTTGCCACCTACAGTCTCCACTCGC AACTCACCCTTGGCAAAATCAGCCACAAACTCTGGTTCAAGCTGCAAGAATTTGAGCACCATTAAGTCATTAACACCCAT TTAGGAACTGTTAACTTCAATAAAAAAGCAATGGAACAAAGCATTGGATAGGATGTAAGCTTTCATTGGAAAAAGAAAAT TTGTATGACTTTGAAAAAACAGATATGCTTTGGAACTTCAAAGAGAATTAAGGCATATATAATAGGGCAAAAAGAGCCAA AACAATATCTATAGCACTGCAAGTCGGTCACTAGCAACATTCAGTTACTGACAGAATTCCAAATTCAACTAGAGAATTAA TCTTATGTATGAGAAACCCATGCTGCAGTATCAACCAGAATGCATGGAAGTTCCAGGCATTCGTCTTTCATGTTAAACAG ATCTAGACTGTACTTTGTACTCTCTGTAAGGGTGAAAACAGGAAGGAATTCAGATTAAGATCTCTCTTTTAAGGCACATA AATCAGAAGCAACAATTTCCATTCCATTCTTTGTTATTTCCACCAATGTCAAGGATGAGACCAGTTCAACGAGGTGGTAC ATACACGGAAAAAGTAATAAATAATGAAACACATAAAAAAAAGACATATCATGTAGTTACGAGGAAATGGAAGACAAACG TGCATGCTTACCTCAACAAGCTCAGATAATTTTCCTTCCAGGCTTGATGCATTCATGTCCAACCCCAGTCTCTCAAGTTC AGCTTCAAGCTCAGCTTCAATCTTGCTTATAGATTCTGAACTTAGTTCTGCCTTATCATATGATTCTTTGCAGTTAATTC TTGGAGAGTTATCCATATGCTTTTCAGGGGAAAATTCATTTAGCTCCTTATCATAGGAGGAATGATCACATGTATCCTGG GAACCATAATTTTCATTATTTATCTCCTTCACAGTCAATGAATCTTTCATTTCTAGTTCCTCTTGTAGATCTTGAACCAA GTTTTCAGTCTGCTTCAACAGTTCTCTTAGGCTATCCATTTCTTTTTTATTTTCCACGATGGAAGCTATCATCCCGAAAG AAATCCCAAGACTGAAGAGAAATGTTGGATCTGATGATTATGGATGTGTTAACAAATATAGTTATCAAATGTAAAACTCA TTACATAATTACATAACACAAATTATGTATCAGAGACATAATATCCACCCATAAAAAATAGCAACTTAATTTGTATAATA AAATAAATGTTGAAGCCTCTAATGCATATGATATGTTTGGGTTATTAAGTTAGCCTTGGCCAGCACGTTAAAGAACAGAT ACCCTTTACTAATTAACGTTGGGAATGCTATTTTAGGACCTGAAGCAATTTCTTCCCACCTCCAGCAGCAAAAACTCCAT TTTAAAAGAAAAATGCGATTTCTCTACTGTGCTTTTTCAACATCATTTATCGTGAATAGAGAAACTAAGAGCTACAATAT CCTTCCCATGCATAAGGACATAAACCAGATTGAACTTCGAAAACAAATTGATTTTCAACTACAACAATGCTCTTTAGTAC GAAAATTGAGTTAACGAAACTCAAGAATGAAACTTGATTGGTGTGTATTTAAACTTTCTTATTCACCAACCACACCCATG ATTTCCGACAAAAAGACCTCTGATTGGTTGAAAATACCATTCTTGCAATTCGTGGAGAGATTGACTCGTACTAAATAGCA TTGCTGTTTCAAATAATACAAGTATCATTCTCTGAGACTAGTGAATTGTACAGAAAAATCAAATCCCTATATTATAACAT ATACGTGTAAGCAAAAAGAAACCAAGATTCCTTTATAGTTTTTCTTCTCACTGCAGGAAGAGAGTAAACATAGAATGCAG AGAGATCTTGAAAGATTATAATACAGCATTGGAAAACTGATAGGCACTTCAAGAATAACGGTGGTGTTATTCATACCACA AAATAAAGGGGTCTAAACACAGGCATGAACAATAAATATAACAAAACAATCATTTTCAAAAAGGCAGCATTGACTAAGTG GTATAGTTTAAATCAAGAAATATACCACAATGAGTATGGATGAGTTTTCCGCTAAACAAATCTCCGGAAGAGCTCAATCT TCTGCTTCGCCCAGTGAATGCATTTAATTTCATCTTCTTCGCTTCATTTGAAGTCCTGAGTTTGGGTAAGGAAGGAATCC CAAATACATTTTCATCTCTTACTTGACTGGCGTCTTTATGCAACTTATATTCCTTGATCCCAAATGATGCACTTAACGAA ATATCATTTGCATGGTTGATTATTTGGCTTCCATTGCTTACAAGAAGTGACCTCGTTGTCGTGGATGACGATGAAAGAGG ACTAAAGACGTATTCTTCTATTTTGGCATGCTCTTTGTATAGCTGAGCCATAAAACAACTTTCTAAGGAATTTAAAGGTT TACTAATGTGCCCAGACAAATTTCTAGTCCTGAGAAAGGTTTTATGTCCAGAAGAGTTATGAACAGGAACCACTTTGGCA GAAGAATCAGGAACAAAGAAACCATGATTGCCACCAATATTGGAGCTTTGTTCAATTCCGTCTTCAAAATTCTTGAAGTT ACCGTCACTTTGTGATAACGGTACTACTAAGTTCGATATCGATAGGACATCACTGTTGCTGTAATTCTGGAAGTGCCTAA TGTTAGAAGCCACTTCTCCTGTCACAAGATCATCCGGCAAGTCCACATCTGAAGACTTCCCCTTTGAAGCCCTTCTATCT AAAGAAACATCTTTACCCAATTCACCCTTCCGCGCTTGTTTAAGTAAGGAGAAGGGGCAGCTCGAGGACTCAGGATTCTC AAAATTTGAATCCTCCGAAGACAAACGATAAGAGCTATCACCATCTTTTGAAATCTTGTTCCAATATTTAGCCAAATACC CAGCTCCAGCAGCAGCTGCAACAACCCACAAATCCATTCTCCCCTCCCTGACTTCCTCCCACAACCACTAACCAAACTCC ACAACAGAGCCAACACTCTTTCTTTCAATTATTAGCACCAAACAGTCAAGGGAAGAACTTTCCATGAATTAGTGAAATAC CCTTCAGGTGTTCTGGCAGTAACAAACTAAAGAATGAAGACCTGAAAACCCCTTCAAGGAAACCAAAACCACAATCCTTG ACTCACCAAACATCTACTCCTCCTCCCCACTCTTACTATATTGTGCATTAAATCAAACACCTACCATGCACCACTTCAAC CACAAGAAACTACTCCCCAAGTGCAAGCAAGGAGAACCAACAATACTTCAAATCAGATAAACACCTGAGCTTAACCAGAG AAAAGGAACAAGAAGAAATAAGAAACATAAATTTCAGAAAACTTCAAAAGCAGAAATAAACCAATGCCAGAGACAACCAT CCCCTAAATGAAACATTTCTGAGAGAAACAAGTAACCCACTCAATGAATCAAAAAACAAAAACAAAAAAACCACACAAAC TTGAAGAAGAACCAAATTTGATTACAAGAAACAGAAACTACAAGTAGCAGCAACTTCACTGCAAAACCTGTGCATGAGAA AAAAAACCCATTTGACCAAAACAATCAAAGCCAAAACCCCTCACTTTATCAATACAATAACCAATGAACACGGACTCTAT TGCTTGTAATTTTCTGGCATTGGAGAAAAAGAGAGAGAAAATTGAAAGAAAACATACATTCGAAAATTCCTCAGTGTTGT GAAACGAAATCTAGGACGCCGAATTTGTCGTCGCAGGTTGGTTGGAAAAGGGAATGAGACCCGGTACAGCGTTATCTCCA CACAACATCTACATTCACGGATGAGAAAAACACTGGTCGCTTGGAAAATATCACACGAATAATATATTATTATTTTCCAG CAAAGAAAATGAATTTTTCAATTTTGTAGGGTTCACTAGGGTCTCATCCACATTGACATTTTCTTGTGTCGTAA
CDS sequence (LotjaGi1g1v0213200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTTATTTGGAAGAGTTGGGAATATACTAAAGCAAGCAACGACTAGGAAGATCAATTCAGAGTTATGTTCATTCCC ATCTGGTTTCCAGGCTATACGGTGCTTTTCAAATTCTCCAAGTACTAAGCTGTTCATAGGAGGTGTTTCATATAATACTG ATGACCAAAGTTTGGAGGAAGCTTTCTCAAAATATGGTCAAGTTCTTGATGCTAGGATAATTAAGGATCGCGAGTCCGGT AGGTCAAGAGGATTTGGTTTTGTTACTTTCTCTACTCTTGAGGAGGCATCAAGTGCCATTCAGGGAGTGGATGGACAGGA TCTACATGGTCGTCAGGTTAAGGTAAATTTTGCTAATGAAAGACCCCGTGCATATCCAGGTAGTTACGGTAACTCTCCAT ATGGGAATGCCGGTGGCAATGCGACTGGAGTTTTAAATACTACTGGATATCCTGGAGATGTCTATGAATCGGATAGCAAT CCTGGTAACCGTGCTGGCAATAACTATGGTACTGATGACAATACCAGAAGTTCTGGTGGTGGTTATGGTTATGGCAGCTT TCCTAGTGGAAACACTTACAATGATGGAACTAGTGGAGGTTACTGTGTCAACAATGGAAATTATGCTGCTGCTGCGGGTG TTGGAGAGAGTAATACTGTTAACTATGGTAGTGCTCCTGGTGGTGGTTATGGTAACTACGGCACTGCTGCGCCCGGAATT GGCAATCGTTATAATTATGACAATTCTGCTGTATTTGGCAGCAGTGGTAATAATTTTAATGTTGCTGGTGGTGGCAGCAG CAGTGAATACCCTGGAAGTGCCATGGGGTATGGTACCTTTGGTATGGGTACTGGTGGTGACTTTGGTGGTGGTGCTGGTG GTGGTGGTGGTGATGGTGGATGTGCTTAA
Protein sequence (LotjaGi1g1v0213200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALFGRVGNILKQATTRKINSELCSFPSGFQAIRCFSNSPSTKLFIGGVSYNTDDQSLEEAFSKYGQVLDARIIKDRESG RSRGFGFVTFSTLEEASSAIQGVDGQDLHGRQVKVNFANERPRAYPGSYGNSPYGNAGGNATGVLNTTGYPGDVYESDSN PGNRAGNNYGTDDNTRSSGGGYGYGSFPSGNTYNDGTSGGYCVNNGNYAAAAGVGESNTVNYGSAPGGGYGNYGTAAPGI GNRYNYDNSAVFGSSGNNFNVAGGGSSSEYPGSAMGYGTFGMGTGGDFGGGAGGGGGDGGCA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 7 | 132 | 126 | 1.5E-30 | ||
| PANTHER | 8 | 158 | 151 | 1.3E-45 | – | |
| PANTHER | 8 | 158 | 151 | 1.3E-45 | – | |
| SUPERFAMILY | 38 | 139 | 102 | 3.09E-32 | ||
| ProSiteProfiles | 42 | 120 | 79 | 22.06 | ||
| SMART | 43 | 116 | 74 | 1.7E-28 | ||
| Pfam | 44 | 114 | 71 | 3.1E-21 | ||
| MobiDBLite | 148 | 182 | 35 | - | – | |
| MobiDBLite | 160 | 182 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi1g1v0213200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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