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LotjaGi1g1v0214000.3

Overview

Field Value
Gene ID LotjaGi1g1v0214000
Transcript ID LotjaGi1g1v0214000.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description ATP synthase gamma chain; TAIR: AT2G33040.1 gamma subunit of Mt ATP synthase; Swiss-Prot: sp|P26360|ATPG3_IPOBA ATP synthase subunit gamma, mitochondrial; TrEMBL-Plants: tr|I3SLV8|I3SLV8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0214000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:47184319..47188675) extracted from Lotus japonicus Gifu genome v1.2.

ATGGCGATGGCTGCTGCTCTTCGACGCGAGGGGAAGCGTTTGGCTCCTCTCATCTCTCCCCTACCAATCCGATCCTCTCC CATTTCTCCGTCAGTTCTCGATTTGATTTCGCTTCATCTCTTCCCTTTTTCTCAATCACTGATTGATTGATTGATTTCAT TTTGTTCACAGAGACCAAACCCTCAATGGATTCCGCTCCATTTCAACTCAAATTGGTACGATTCATTCAATTACCCTTCT TCTTCCCCCTTGATTGTATTTGTATCGCTTGATTCATGGATCTGTGTAATTTTGTTGCAGTTCGAAACCGGATGAAGAGT GTCAAGAATATCCAGAAAATCACCAAGGCCATGAAGATGGTTGCCGCGTCTAAGCTACGCGCTGTTCAAACCAGAGCTGA AAATTCACGTGGGTTGTGGCAGCCCTTCACGGCCCTTCTGGGTGATGCTACAAGTATGTATGATCTATTATTATGATTGG ATCTTATACACTCTTCTGTTGATCTTTGATATTTGTATGTCATGGTTTTGTTGATGTGTGCACAAAGTTTTTGATGTGTG CTTTTGTGAAGAGATATCACTTAAACTTTGTTTGCGTCGCAGAAGCACACATCAACAGTTTTTGTATGTATTTTTATGAA TTAGGATTCAATAGTGTGTGAATGAGAATGTATGCGATGTTTCTGTTGCCCTGCCTTTGCTCATTGGTGGTTCTGTTTCT ATGCTTAGGTGTTGACGTCAAGAAGAACGTCATTGTTACCGTTTCATCTGACAAAGGTCTTTGCGGTGGAATCAATTCCA CATCCGTGAAGATAAGCAGGGCTTTAAGCAAATTGAATGCGGGTAAATTTTTGCACTTCCTTTTTGCATGTATTGCCATG GTTGCAATTAGTGGCATAGTAACTTTTTGCAATTTCAAGGATGGTTATGTAACTGCAACCATGATACAATTTAGAACCCT TGCAATGTTAAATTACATTTTTGTTGGAATATTATCAATGAGACTAAATTTGTAATGTTGAACGATTCATAGGATAAAGT CTCTGAATGATAATAGTTTCATTCTTATTTGCTACTACAGGGCCTGATAAAGAGACAAAGTATGTCATATTGGGCGAGAA AGCTAAAGCTCAGCTGATTCGTGACTCCAAGCAAGACATTCTGCTCTCATTAACTGAGTTGCAGAAAAATCCTCTGAATT ACACTCAGGTTAGTATATTGTGTGCCATCCAATGGTTGATGGTCTTACTAAATACATTTGTGCCTGAACATTATGGTTTC TAGAGCCTACTTAAATTTTCTTGAAATGATCTGTTCATAAGTGATTACTGTTCAAAAGCCGATATTACAATTTGATAGTT TGATATTTCTATGGGCCGACACTACTTTAAAGGGTAAAGGACTTTAAGTAACTATGGAAATTTATGACTTATGAGGTCAA GATGAACTTCATAATTGAATATCATGTAGATGCAACAGTTTACCTTTTAGTGTGCCTTTGAATCTTGAGATCTCATGTTT AACATATTTCATGGAATCCAGTTCTTAGTGCTCTAAATTAATTTGTTGTTAGGAAGATTGAATTATGACCTTCGTTATAA ATGTTTTTATGGAGAAATTCTGATTGAACCCAGGCGGTGATTGATCAATGTAGGCAACCTAACCCTGTGGAGCAAGGCTT GTGTGTTGTTGAATATTGAAATTTAGCACATGTTTGGCTCAGGTTCTTATGAGGAAATAATCGTTTATTGTTTTTAGTAG CTCTCCCAAGATGCTGCCAAAAGAGGGGGTTTTGACCCATAATAAGTTATGTGGATTTTGATGATTGCCGATCCATATCT GACATAGATAAATTTTATATATGAATGTTTTAGATAGTCTAGTGCGGAATATGTTCCTGTCTTTCACTCTTTCCTTCTAA TTGTTGTATTTTCAGGTGTCAGTCTTGGCAGATGACATTCTAAAGAATGTTGAGTTCGATGCATTGAGGATCGTGTTCAA CAAATTTCATTCAGTTGTACAGTTTTATCCAACTGTGTCAACTGTACTATCTCCTGAGGTACATACATTTATTAAGCAGT GGTTTGGATTGCCTATGGTGTACAAGTTTTGTCCACTGAGTCCTATCATAAAGTCTTGTTGAGATTCTAGGTTTTGGTGG TGCTTTATATGAAGAAAGGTCTGAGGACTTTTATTTTGCAATATTAGGTTTTCACTATATCCTTCTTGTTTTAATGATGC GAAGTGACGCAATTTCCTTGTAGATTGTCGAGAGAGAGACTGAATCTGGAGGAATGCTTGGGGAATTGGATTCATATGAG ATTGAAGGTGGTGATTCAAAATCAGAAATTCTTCAGAATCTGTCTGAGTTCCAGTTTTCTTGTGTGAGTACTTTTTTTCA AAACTTCATGACAGACTATTTTTTTGTAGGCTGCATTTTCACATCACACTTTGATTTGAATCATAAGCTTTAGGGTTTGT GATGGATATGTTGCACTTCTATATTCACTACCCAGCTATACTTCTCGCTCTGTTCTTTTGTTGTTTTTGTTCTAAACTGT AGTGGGTTCCTATCGACTTCATAACAAGTTCATTTTGGCGTTACAATAAGATGATTCTAGGATTTCATGTACGGCACAAA TTCTGCTCATAATTTTCTTTCTATGCATGTCCTTACATAGTACACAATATTATATAAATGAGAGAGGGAGACCTTTTCTC ACACAGCATAGAAATGTCTCCCTTTTGGTTTCGAAAATGTTATTTAGTTATAGCATATTCATAATTTGTCATGATCCTTC ATTTACGAGGGAGGAGAGGGCAAGGTGGAGAGGAGAGAAGTATAAATGCGTTTTATTTTTGTAGGGTTGAGGGGGAGGGG AGTAAGTTATTTTTCCATTGATTTTTCACCTCATGATATTCAGTGTTCATTTAAACTCAAATGCATCTAAACCCTAAAGT ATAAAGTGTTCGAAAATTTTATTCTAAATTACATCTTACAAATATTCTTCACATACCTAAGTGGGGCTTGAATGAGTAAA AAATAACCGTTAGTCACTTAATTGTTACTGTTTCGATTAGATAGGTGTATGTGCTTGAATTAGTTACCTGGTTAGATAAT TAGTTAATGAAGGTGATATAGAGGGTATGAACGATAGGAAGTAATAATGAAGGGGGTCCTTGGATTTGTAGTGGAGTTTG GGAACGAGAGCCTAGGTGTCTCATCTGTTCTTGTACTCTTCGATGCAGGTCAACAGACGTCGTATTCTGTCAATAAAATT TTCATTTCTTTCCCATATTCTGATCCAGTTGTCATATTCTTAAAACATCATGTTTTATGTTCTAGGCTTTAATTTCATGT TATAAGTTGCTATTTTCCCTATATTTGCTTAGCTGCATCAAGAATGCTAGATGATAACTTTACTGCTGGCAGCAATGTGA GGGTGTCACCGGTCACTGAAAATTCCTTGGAAATTCAGAATGTTAAGACTTGGTTATTGTCAGTCTGCGGCTTCTCATTT AAACTGTTGATCAATTCAAGGAGTTGACACTATTTTAAAATGCATTTCGGAATGTTGTTCAGCAGTTAAATTACTACACG TTTTCCTTTTCCTTTGGTATATTCTTACTTTTTGATTTATAAATTTTATGGAGAATTGCAATCAATTTAGTTGTGTGAGG CTTGTCTTGCATCAACCTGAAATTTTGTGCTGATTGTGGCTTATTATCGGTTTTACTTGTACATTTGCTTTCTATTTCTT TTGAATGCTTTTTAATTTAGAAATGTTTAGGCAAAACCTTTTACTGTTTGAAAGTTATGTCTGTTTCAAATTATGCTTCC ATTTTTCTTTACACGCTACTTTGGTATAGGTCATGTTCAATGCGGTGTTGGAGAATGCTTGCAGTGAGCAAGGAGCAAGG ATGTCTGCTATGGACAGCTCTAGCAGGAATGCTGGGGATATGCTTGATCGTCTGACCCTCACCTATAACAGGTCACTTTT TCTCTTGTTCTCTTATACCACATGCATGTGTTAGTGTTGTCAAATAGTGCCGCGTACCACTGGTCTCACTGCTATTTTTC CGCTATGAGGGTTTCAGATAGCGATTTTTGGCTATCTGTTATTTTCTGCGATCCACGATTAACAACACTGATGTGTTTAA CTTCCATTCAACAACCATGGTCTTGAACAGAACTCTGTTTGGACTATCCTATTTTAACGTATTATACTATTATTATCTCA TTAAAAGCTACTGTTTCACTGACTGGTCTCCTTGTTCATTGCGACAGAACTCGTCAAGCATCAATTACCACTGAATTGAT TGAGATTATCTCTGGAGCTTCAGCGCTGGAAGGTTAA 

CDS sequence (LotjaGi1g1v0214000.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGATGGCTGCTGCTCTTCGACGCGAGGGGAAGCGTTTGGCTCCTCTCATCTCTCCCCTACCAATCCGATCCTCTCC CATTTCTCCGTCAGTTCTCGATTTGATTTCAGACCAAACCCTCAATGGATTCCGCTCCATTTCAACTCAAATTGTTCGAA ACCGGATGAAGAGTGTCAAGAATATCCAGAAAATCACCAAGGCCATGAAGATGGTTGCCGCGTCTAAGCTACGCGCTGTT CAAACCAGAGCTGAAAATTCACGTGGGTTGTGGCAGCCCTTCACGGCCCTTCTGGGTGATGCTACAAGTGTTGACGTCAA GAAGAACGTCATTGTTACCGTTTCATCTGACAAAGGTCTTTGCGGTGGAATCAATTCCACATCCGTGAAGATAAGCAGGG CTTTAAGCAAATTGAATGCGGGGCCTGATAAAGAGACAAAGTATGTCATATTGGGCGAGAAAGCTAAAGCTCAGCTGATT CGTGACTCCAAGCAAGACATTCTGCTCTCATTAACTGAGTTGCAGAAAAATCCTCTGAATTACACTCAGGTGTCAGTCTT GGCAGATGACATTCTAAAGAATGTTGAGTTCGATGCATTGAGGATCGTGTTCAACAAATTTCATTCAGTTGTACAGTTTT ATCCAACTGTGTCAACTGTACTATCTCCTGAGATTGTCGAGAGAGAGACTGAATCTGGAGGAATGCTTGGGGAATTGGAT TCATATGAGATTGAAGGTGGTGATTCAAAATCAGAAATTCTTCAGAATCTGTCTGAGTTCCAGTTTTCTTGTGTCATGTT CAATGCGGTGTTGGAGAATGCTTGCAGTGAGCAAGGAGCAAGGATGTCTGCTATGGACAGCTCTAGCAGGAATGCTGGGG ATATGCTTGATCGTCTGACCCTCACCTATAACAGAACTCGTCAAGCATCAATTACCACTGAATTGATTGAGATTATCTCT GGAGCTTCAGCGCTGGAAGGTTAA 

Protein sequence (LotjaGi1g1v0214000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAMAAALRREGKRLAPLISPLPIRSSPISPSVLDLISDQTLNGFRSISTQIVRNRMKSVKNIQKITKAMKMVAASKLRAV QTRAENSRGLWQPFTALLGDATSVDVKKNVIVTVSSDKGLCGGINSTSVKISRALSKLNAGPDKETKYVILGEKAKAQLI RDSKQDILLSLTELQKNPLNYTQVSVLADDILKNVEFDALRIVFNKFHSVVQFYPTVSTVLSPEIVERETESGGMLGELD SYEIEGGDSKSEILQNLSEFQFSCVMFNAVLENACSEQGARMSAMDSSSRNAGDMLDRLTLTYNRTRQASITTELIEIIS GASALEG 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PIRSF 22 325 304 1.1E-108
Hamap 46 325 280 24.181
Gene3D 48 91 44 8.2E-10
PANTHER 48 326 279 6.6E-127
PANTHER 48 326 279 6.6E-127
TIGRFAM 48 325 278 1.5E-85
CDD 48 322 275 1.70466E-97
SUPERFAMILY 50 325 276 5.23E-71
Pfam 51 325 275 1.5E-74
Gene3D 98 230 133 2.9E-34
PRINTS 106 125 20 1.4E-32
PRINTS 198 215 18 1.4E-32
Gene3D 231 326 96 4.8E-28
PRINTS 272 291 20 1.4E-32
PRINTS 303 324 22 1.4E-32
ProSitePatterns 311 324 14 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Biological process ATP synthesis coupled proton transport The transport of protons across a membrane to generate an electrochemical gradient (proton-motive force) that powers ATP synthesis.
Cellular component Proton-transporting ATP synthase complex, catalytic core F(1) The sector of a hydrogen-transporting ATP synthase complex in which the catalytic activity resides; it comprises the catalytic core and central stalk, and is peripherally associated with a membrane, such as the plasma membrane or the mitochondrial inner membrane, when the entire ATP synthase is assembled.
Molecular function Proton-transporting ATP synthase activity, rotational mechanism Enables the transfer of protons from one side of a membrane to the other according to the reaction: ADP + H2O + phosphate + H+(in) = ATP + H+(out), by a rotational mechanism.

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0214000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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