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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0215900 |
| Transcript ID | LotjaGi1g1v0215900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Serine/threonine-protein kinase atr; TAIR: AT5G62550.1 microtubule-associated futsch-like protein; Swiss-Prot: sp|Q47860|HYIN_PANAY Indoleacetamide hydrolase; TrEMBL-Plants: tr|I3SMW9|I3SMW9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0215900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:47570957..47574086) extracted from Lotus japonicus Gifu genome v1.2.
TTTCATTAGCGTGCATCTCATTCTTTTCTTTTTCTTTTAAAACGCACCATATTCCATCAAATCCTTAGTTGGCTAATTGG CTTCACCTTCACTGTCTTTGAAAATAAAAGACCTTCCACGTCAGCATCACAACGTCCCAAATTTCAAGTTTATTTCCCGC CCAGAAGTAACCTAAAGAAGACTATTAGACAGAGATAAATCCCCTTTAGACACATAATAACGCGTCTTGCATCTATCTCA ATTCTCAGAATTCAGAATTCAGAATTCAGAATCAGATATGGAAGAACCTGTCAAAGATCAACAACCCTCTTCTGCTACTT CTTCTGGTAACACAAACACTGTTTTAATTTTATGCATGTTATGTGTATTCAACAACAACAACCTAAATCTTTTGTTCTGT GCTTTTGTGATTCAGGAAACTCGTCCAGACCCAAGCTTCAGAGGTACGCGCTCCGCTCCGTTACTAAATCCAAGGAAGAG AAGCCGTCTGCTCCCAATTCTTCTGAGTCCAAAAGGTACTTACATGCTTGCATTCTCTTCTCAATTTCTAACCAGCACTT GCACTTGTTTACGGTTCATGAACAAGTTACTTTTTTCTTTGTTTTTTTGAATTCTTAACCGCCAATTGGTTCTTTCTATA AAAGCAAATGTCCCAACCATTTAAATTTAAGGGATTTGGGTTACCCTACATTCACGCATTCACAATATCTAGATCGTAAA ACTTAAGATTAGTCTGCTCATATTTTTTATCAAGATGGGTTTGTAGACTTGTCTTAAAACCTAAGCTATTCGTGACAGTA GGGAATCCATTACAAACTGAAGCTTGCAAGAGATACAAATTCCAATACTTTTTAATTAGTAATTATTTGTGTTTGGTGTT AGGACTGTTTTCTCTAGGAAATTGAATTGAAAAGTTTTGATTTTTCTATTTTCCCCCTTTGTGGATTCAAATTGAAGCAC TGTTTCACATTTTTGTTTAAGGGGTGGAAATGCTTCAACTGTAAGCAAAAGTGTGGGTGTTCTAGACTTCTCTGCCAAGG ACAAGTCTGGTAGTGCCAAACCACCCAGAAGGTTCTCCAATCCTGCCAAAGCATCTCCCACTCCAGGACACAAGGTGGCT AGCAACATTACCCCAATCTCTGAGACCAGGACAGGCAGAACTCCTTATGGTCAAGGCAGAGGCAAAACAACACCCATTTC TGAAATTTCCAGGACATCTAGCAGAGTGAAGTTAAATCTTCTAACCTCACCTTCATATTGGTTGAACCAGATCAAGCTCT CTGAATCTGCTGCCAAACACTCAATTTCACTTGGCTTCTTCAAACTAGCTTTGGAGGCAGGATGTGAGGTACAATAAAAA CAGGCACATTTACATAATCAGCTATATTTTTAATGGACCTGTTGTGGTAGACTCACTTGTGTTCAATATGAAAACCCTTT TTTTTGTTTGCTCATTTGTTGAACCAATATGCTATTTTTCTTTGTTTTAAAGATTATGATTTATGTTTCTATTGATTGAT CAATCATAGCCTCTCAAGTCAATGCAAGAAGAGCTAAAATCTTATGTGAGCAGACATCAGCTTGCTGAGCTTGGAGAATC TGTGAAAGAGTTACTTGAAAGATATAATATCTCAGAAAACATAGAGCAGTTGCAGGTGTCTGAAACTATTTCACAGGTTC CGGAAGACGGAAACCGATCGTCTGATGATGATGTGCATAGCTCTTCTTCTACCATGGAGGCTAGAAAATTGAAACCCAAG TGCTTGAACATTGATTCTCCTCAACCTCAACTCAACACTCCTGCAATAGAGTCAAACAAGAAGGAGAACACTGAATCTAC TCAACTCACTACTCCTGCAATAGAGTCAAACAGGAAGGAGACTAGCCAAAAGGGTAGTCCTGGATCCAGGTTGCGAGGAA AGCTTAGCACCAACTCCAAAACTCCAAGGCCTGCTTTAGACAGTGGGAATCGTAGGTCCGGTAGAAATTCTGAGAAGCCA AGCAAGCAAGAGGCTAGTAAGGATAAGGGCATGGTCAGGAGGCAGGGAAAGAAATCTGATGTAAAAGGTGAGTGACCATT AGGGTTTTCAATTGCGGTTGCGTTGCGGAATTGCGGATAAATGTTGGTTGTTGCAGGCGCAATTGCGGCCGCAATTGTGG TTTTAAACCGCATTTTAAAACCTAAGTGTGCACAACAAAATATGTTTATGATATCTATGATATTTCTAGTTCAGCTTGTC TAAATGCTTGTTATTATCTTTTTTCTGCTCACAGTTCCAGTTAGCACTCCAAAGGGAAACAAAGAAAATAAGGTAAACAG TTTACTAAGAAGTTTATAGTTTAATTTTAGCAAGCTGATGCATTGAAATGTATAGCTAAGGATTTATTTCTCTTCTCTAG TAGGACGTTCAGACCAATGAAGAGGTCAGCATGGTAGAAGTCCTGTAAACAATATTTCAAGCTTGGATTTCTGAATTTTT GTGATTCTCATACTTTCGAATTATGTCTGCCCGTCTTCTATGTGGAGCTTGCTTATGAGTTCAGATGAAAATGGTTTTTT ATTGTCTGCTGTCAAAGGCTGCTATTCATCTTATATTTTGTGGCTGTGTCCTGTTATTTATTATTACAAAGTCCCTAATC AAACCAAACTGTATTGAATCTTGTGGTTTTTGTCTAATGTCCATATCTATAGCTGAATTTGTAATATTTGTGAGTGCAGA TTTCTGACTTGAATTTATTAGTAGTAGCCATTTCATCTCGTAAATGTTTTACCCTTCAGCTATCCTTCGAAAATGTCAGG TTGTAAGCATTATATACTACTGAAACATGATTTAGTGATATGATATCACCTTCCCCTGCCCTTCAAAATAATTACTAAGA AATGAATTATCCTCCGCATTATGGAATTATTAGTTTCATTCACGTCTTGCCATGACTTCTTAGGCAACATCACATAGTTA AAGATGCTGCTTTTCTATTAACGGTTTAGGCTCACCTTTACCCTTCGGAAAAAGTTTCATTCACATCTCTCATGCAGGGT TGCTTAAACACTATTATGGTGGCCCCAAATTGCTACATAGGATTTTAGCAACCCAAACAGAATTCTCTCCAACTACAATT GTTTATTTTA
CDS sequence (LotjaGi1g1v0215900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGAACCTGTCAAAGATCAACAACCCTCTTCTGCTACTTCTTCTGGAAACTCGTCCAGACCCAAGCTTCAGAGGTA CGCGCTCCGCTCCGTTACTAAATCCAAGGAAGAGAAGCCGTCTGCTCCCAATTCTTCTGAGTCCAAAAGGGGTGGAAATG CTTCAACTGTAAGCAAAAGTGTGGGTGTTCTAGACTTCTCTGCCAAGGACAAGTCTGGTAGTGCCAAACCACCCAGAAGG TTCTCCAATCCTGCCAAAGCATCTCCCACTCCAGGACACAAGGTGGCTAGCAACATTACCCCAATCTCTGAGACCAGGAC AGGCAGAACTCCTTATGGTCAAGGCAGAGGCAAAACAACACCCATTTCTGAAATTTCCAGGACATCTAGCAGAGTGAAGT TAAATCTTCTAACCTCACCTTCATATTGGTTGAACCAGATCAAGCTCTCTGAATCTGCTGCCAAACACTCAATTTCACTT GGCTTCTTCAAACTAGCTTTGGAGGCAGGATGTGAGCCTCTCAAGTCAATGCAAGAAGAGCTAAAATCTTATGTGAGCAG ACATCAGCTTGCTGAGCTTGGAGAATCTGTGAAAGAGTTACTTGAAAGATATAATATCTCAGAAAACATAGAGCAGTTGC AGGTGTCTGAAACTATTTCACAGGTTCCGGAAGACGGAAACCGATCGTCTGATGATGATGTGCATAGCTCTTCTTCTACC ATGGAGGCTAGAAAATTGAAACCCAAGTGCTTGAACATTGATTCTCCTCAACCTCAACTCAACACTCCTGCAATAGAGTC AAACAAGAAGGAGAACACTGAATCTACTCAACTCACTACTCCTGCAATAGAGTCAAACAGGAAGGAGACTAGCCAAAAGG GTAGTCCTGGATCCAGGTTGCGAGGAAAGCTTAGCACCAACTCCAAAACTCCAAGGCCTGCTTTAGACAGTGGGAATCGT AGGTCCGGTAGAAATTCTGAGAAGCCAAGCAAGCAAGAGGCTAGTAAGGATAAGGGCATGGTCAGGAGGCAGGGAAAGAA ATCTGATGTAAAAGTTCCAGTTAGCACTCCAAAGGGAAACAAAGAAAATAAGGACGTTCAGACCAATGAAGAGGTCAGCA TGGTAGAAGTCCTGTAA
Protein sequence (LotjaGi1g1v0215900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEEPVKDQQPSSATSSGNSSRPKLQRYALRSVTKSKEEKPSAPNSSESKRGGNASTVSKSVGVLDFSAKDKSGSAKPPRR FSNPAKASPTPGHKVASNITPISETRTGRTPYGQGRGKTTPISEISRTSSRVKLNLLTSPSYWLNQIKLSESAAKHSISL GFFKLALEAGCEPLKSMQEELKSYVSRHQLAELGESVKELLERYNISENIEQLQVSETISQVPEDGNRSSDDDVHSSSST MEARKLKPKCLNIDSPQPQLNTPAIESNKKENTESTQLTTPAIESNRKETSQKGSPGSRLRGKLSTNSKTPRPALDSGNR RSGRNSEKPSKQEASKDKGMVRRQGKKSDVKVPVSTPKGNKENKDVQTNEEVSMVEVL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 375 | 375 | 1.4E-110 | – | |
| PANTHER | 1 | 375 | 375 | 1.4E-110 | – | |
| MobiDBLite | 1 | 122 | 122 | - | – | |
| MobiDBLite | 7 | 26 | 20 | - | – | |
| MobiDBLite | 30 | 44 | 15 | - | – | |
| MobiDBLite | 45 | 62 | 18 | - | – | |
| MobiDBLite | 93 | 122 | 30 | - | – | |
| MobiDBLite | 215 | 378 | 164 | - | – | |
| MobiDBLite | 226 | 242 | 17 | - | – | |
| MobiDBLite | 254 | 315 | 62 | - | – | |
| MobiDBLite | 321 | 349 | 29 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0215900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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