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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0221900 |
| Transcript ID | LotjaGi1g1v0221900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Photosynthetic NDH subcomplex B 4; TAIR: AT1G18730.1 NDH dependent flow 6; Swiss-Prot: sp|Q8RXS1|PNSB4_ARATH Photosynthetic NDH subunit of subcomplex B 4, chloroplastic; TrEMBL-Plants: tr|I3SEW7|I3SEW7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0221900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:49274311..49276069) extracted from Lotus japonicus Gifu genome v1.2.
CACTATCTTCTTATCCACTCTATCCCATATATGTAAGGACCAGCATATAGCAAACACTTTACAGTTCCACACTGTTCAAG GCAATGGCTGAAGCTATCATGGGTTTCACCGTTTTCAAGTCACATATTCATTGCTCATGTCTACAAACAAAGAGATTTGA TGTGAACCCGTCTTCAAGACTGGTAAAGTATTCCTAATTTGTTGTACATTTTATCTCTTGAGTTTCCCAAGTTAGTTTCA AAGCATAAAAATGAATTTGACAATCTTTTTGCAGCCTAAGCTGCATTCAAACTCCACCCTCTTTCACAGATCGTGGCAGG TAAGTAGTTTGAATTAAAAATGGAAACCAGGTTCAGTTTAAACTCTTAAATCTTGATAACACATGTGTGTTTGTAAAAAG GTCTTTGAGAGTAAATGCAAGAGAGCATCTTTGTGTAAAGTGAATGCCTTGCCAGATTGGCCACTGATGGCAATTCTAGT AGAGCAAATGGAAGGGCAGAGAGATATGATCACTGAGAAAACAATTTGGCATCTTAGTGATGGCCAAATTAAGAATGTCT GTAAGTCTTAAAATACTCCCTTCTTTATGTCTCTATTTTCTCTCCTTGGAATTTCAATTTGACTACTCATTGGTACCCTT TCTGTTGCAGATTCTTGGTACATAATGTTCACTGTGTGGGGATGCTTGGTCTTTGGTTCCATGAAGGTAAAGCACTTATC CTTCTATTCAAATTTAGTCCATGTTTGGAAATCTTTCTAAAATTAATTCTGAAAACAGAATCGATTATTAGAGAAACTTT TATGAGTAGCTTCGGAGTTTTAAAATTGATCCTGATAAAGTAAATGTCATCCAAACATGCTATTAGCCATTGTGTATATT TGATATGATTTAGGATCCATACTACGACTCAGAAACATATAGGGGAGATGGAGGAGATGGTACTGGCAACTGGATCTATG AGAAGGTAAGTAACTTCAATGAATTTTATTAATGTAATAGTGTTGCACTAAATACATGGTTTTAAATTGCGGTTTCAAAT GCAATTACAATGCAATATCAAAGTTTTTCGAGTCTATTGTGAACGCATTAACCGTATTTGTCCACTATTAATTTTCTGTA TTTTCAAAAATCTAGACGCAACCATAACCGCAATTTAAAACCACAGCTAAACGCATATATCTTACACATAGCAAAACAGA ACCTTCATTGCGGGTATTATTATGGGCTATGCAGCAAGAGATTATGGAAGCAGAAGCCAGAGAAGCTCTGTGGCGCGAGG AGTTGATTGAGGAGATAGAGCAAAAGGTTGGAGGGTTGAAAGAACTTGAAGAAGTAAGCACGAAAGAGGAAGTATTCAAG TGATGTTTCATCAATGTGTATATAAAGTTCATTATAGGAGCAAATTTTTATGCTTCATTGTTAAACCACCGTTTATTACT TTGAAAATATGGGGTCGCTATATAATTCGATGGGTGGAATGGACCTTAATCCTATTGATTAGATAAATTTGCAAATAAAT ATTCAAATGTACAACTTCATACTTTAAATTTAGATTATTTCTCAAATTGCCTTCTTTGGAGTATTTAATCTTCTCTGCTA ATTGTTGGGCCGCGAGATACATAAAATTCTGGAAGATCGTCATATTGAGTTAACACGAGAAAATCACAAATGAATTAGAC ACGACATCTTTCATTCATAACCTTAAGGGTATGTTTAGATTGACGGTAGGGAGTGAGATAGGATCAGGTGAGATGAGAT
CDS sequence (LotjaGi1g1v0221900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGAAGCTATCATGGGTTTCACCGTTTTCAAGTCACATATTCATTGCTCATGTCTACAAACAAAGAGATTTGATGT GAACCCGTCTTCAAGACTGCCTAAGCTGCATTCAAACTCCACCCTCTTTCACAGATCGTGGCAGGTCTTTGAGAGTAAAT GCAAGAGAGCATCTTTGTGTAAAGTGAATGCCTTGCCAGATTGGCCACTGATGGCAATTCTAGTAGAGCAAATGGAAGGG CAGAGAGATATGATCACTGAGAAAACAATTTGGCATCTTAGTGATGGCCAAATTAAGAATGTCTATTCTTGGTACATAAT GTTCACTGTGTGGGGATGCTTGGTCTTTGGTTCCATGAAGGATCCATACTACGACTCAGAAACATATAGGGGAGATGGAG GAGATGGTACTGGCAACTGGATCTATGAGAAGCAAGAGATTATGGAAGCAGAAGCCAGAGAAGCTCTGTGGCGCGAGGAG TTGATTGAGGAGATAGAGCAAAAGGTTGGAGGGTTGAAAGAACTTGAAGAAGTAAGCACGAAAGAGGAAGTATTCAAGTG A
Protein sequence (LotjaGi1g1v0221900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEAIMGFTVFKSHIHCSCLQTKRFDVNPSSRLPKLHSNSTLFHRSWQVFESKCKRASLCKVNALPDWPLMAILVEQMEG QRDMITEKTIWHLSDGQIKNVYSWYIMFTVWGCLVFGSMKDPYYDSETYRGDGGDGTGNWIYEKQEIMEAEAREALWREE LIEEIEQKVGGLKELEEVSTKEEVFK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 184 | 179 | 1.5E-78 | ||
| Coils | 158 | 178 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Chloroplast thylakoid membrane | The pigmented membrane of a chloroplast thylakoid. An example of this component is found in Arabidopsis thaliana. | ||
| Biological process | Photosynthetic electron transport in photosystem I | A photosynthetic electron transport chain in which electrons move from the primary electron acceptor (Quinone, X) through a chain of electron transport molecules in the thylakoid membrane until they reach ferredoxin which passes the electron to the ultimate electron acceptor; NADP. | ||
| Cellular component | NAD(P)H dehydrogenase complex (plastoquinone) | Complex that possesses NAD(P)H dehydrogenase (plastoquinone) activity. The complex is one of the components of the electron transport chain. It is involved in electron transport from an unidentified electron donor, possibly NADH, NADPH or ferredoxin(Fd) to the plastoquinone pool. |
Expression pattern of LotjaGi1g1v0221900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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