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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0228900 |
| Transcript ID | LotjaGi1g1v0228900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding protein; TAIR: AT4G24770.1 31-kDa RNA binding protein; Swiss-Prot: sp|Q04836|CP31A_ARATH 31 kDa ribonucleoprotein, chloroplastic; TrEMBL-Plants: tr|A0A151RVR3|A0A151RVR3_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0228900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:53152030..53155148) extracted from Lotus japonicus Gifu genome v1.2.
CTTCGACACACTTGTTTTCATTTGGATTCATTCAAGTATAAACCAAACCCCCTTATCCTTTTCCCAATCCCTTCTTCATT CACTCCTCTACTCTTCTCTCCTTCTTCTTCTTCTTCTACTTCTTCCATGTCTATCACCTCCTTCAAATCCCTCACAACAA TGGCGGAATCATGTCTTCTCTCTGCACCCTCCTCACTCTTCTACAACAAAACCAAACACCTCTTCTTCTCAGCTCCCTCC AGACCCCTCAAACTCCAACTCTCATCCATCAACCCTTCACCCGCTCTCTCCCTCGCCGCCACAACCCACCACCGCTCTTC CGCGCCCCTCTTCGTCGCCCAGACTTCCGACTGGGCCCAGCAAGAAGAAGACAACACGCTCACCCTCGAAGACCAAGAAG AAGGAGCAGAAGGTGTCAGCGAAACCGAAGCGGGTTGGGAACCCAACGGTGAAGACGCTGAAATCGAGGGTGCTGAAGAA GGAGAAGGAGAAGAAGGAGATTACGAGGAACCACCAGAAGAGGCTAAACTCTTTGTTGGGAACTTGCCTTATGATGCTGA TGGTCACAAATTGGCCGAACTTTTCAACCAAGTTGGAACCGTGGATCTTGCGGAGGTTAAATTATTCTCTTTTTTATCCT TGTTTGGTTGAAATGGTATTGTGTTTTTGTGCTGAAGTGAAATTATGTATGGTGTTTTTGGTTTTAGGTTATTTATAACA GGGAAACTGACCAGAGCCGTGGCTTTGGATTTGTCACCATGAAAACGGTTGAAGATGCTGAGAAAGCTGTGGATAAGTTA AACGGCTATGTAAGTTTTATATGACTTGTTTAGGTTTTGCAACATGTTAAGCTTGAGTTGTATGCTTGCTGTGTTGTGAA CCCTTGTTTTGTTTTTAAATCTGCTAGACTTTGCTGTTTGTAAGTATGACTGTATCCAGCCAGAAGTAGCTGAATGTATT ATGAATTTTGCATCAGAGAACATGAAGTGTGGAATTCATATACTAAAATAATAACATGAGTCCTAAAAGCCATCAGTGTT CTAAAAGCCAGCACTTCATATCTACATTATATTATTTGTCCACTTATTGTGATATTCTGTATATATTGGTTAGCAAAATT CCAAATAATATGAGTTGCAAGCTAGGTGAATGTAATTGCCCAAGAAGTATTGGCATGAATAAATGTCCAAGACCATTATG ACAACCATTTGAAGTGTCTGTGCTTCCATGCTCCTAATCTCATCTTTGAGGAAAGATATGGGAATTTCTATCCTGAACAT ATAGAGAAGCTGAACATCTCAAAAAGTACTTTTTTTCAGATTTATTGTAGACTAATTAGTTCACAAGTTTGGGTAACATT CTTCAAACTTTTCAAATTGCACCTCTTATGTTTCTCTGAACCTGGTAAGTGTAACACTTAATTTTTTATGTCTCAATTAA TCCCGTTAACAAGAATAAATGCCATTTCTGTTAACATTTGAATTGGACTGTAGAACTTATACTACAAAGGTACAATCTCT AAGTTGTACAAATATGTGAGGGGGTTTGTGCCTGATGATGACATTATAACACCTTCCTACGAGTTATATAGTTACATCAT AAAAGCAGGAGATCCAATCCATACAACTATTTGTAATATTTTTGTTTTCAAGTCAATGACTTGGGAGTTTAAATGAATGA AATAAAGCAGAACCTTTATGATTTTGAATAGTTAAATTTCACATTACTACGGAAACTTTTCTGCATGTGCTGAGTTGAGC TGTATGCTCTTCTATTTCTGCATACAAGTCATAAATGTCTTACATTTCTTTCACTGCTTTTATGATGTTTTTTTGGTTCT TTTGGACCTTACCCAGCTTTTCTGCAACAGGATTTCGGTGGTAGACTGTTGACTGTTAATAAGGCTGCTCCAAGAGGATC TAGGCCAGAACGTGCCCCTCGTAGCTTTGATGCCCAACCTGCCTTTAGAGTATATGTTGGTAATTTGCCATGGGATTTTG ACAATAGTCAGTTGGAGCAGGTTTTCAGTGAACATGGTAAGGTTGTGAGTGCCCGGGTAGTGTATGATAGAGAAACTGGA CGATCACGTGGCTTTGGCTTTGTCACAATGTCTGATGAGGCAGAATTGAATGATGCCATTGCTGCCCTTGATGGTCAGGT ATGTTAAATTATCCATGGTCACATGCATTGATAATTAAATATGCTGAAAGCTGAAACATGATTGTTATGGGTTCATGTAT GGTAATAGTCTGAGTTTATCATGTACAACTTTTGAAATTGCCTCTTTCGTGTGTTCCTTTGGGGGTTGGGGCCTATGGGG TAAGGTGAGTCGACGTACAAAAAATGAATCAGTTTTTTTTCTCAGAATCAATTATGTAACCAAAAGCTTTACAGAGAAAT TTCTCTCCATAATTGATTATAATTTCATAATCAGTTGTAGAAGGATTTCTAAACACACTTATATGATTCTTTTTTGGATG ACTTTCTGATATGGTGGTTCATGTATTGCAGAGTTTGGGCGGGAGGACAATCAGAGTGAATGTTGCAGAAGATAGGCCAA GGCGTTCCTTTTGAGTGGTACCTTAAGTAATCCCCATGACAGATGCTGGAGTTCTTTCTCTATTTTAAGAGCTGAGGATA GTGTCTATATTTCTTCTACTTAAAACATCCTTCTTTGGGCAGTCATTTTCGTATTAGATTTACCTATTGTACTGTTATTA TTTTGTTGTCCCGATTAAAAGTGTATTAATTCCGATTCCTGAGATTTTGAAGAAAGCTTTCGATATTTTTTTTTTCATTT TGCTGTTTGTTGCATTTTATGAAATGAGAAAACCGGCCAAGTCCTCTTGCAACTATTGTGCAAGCTGATAAAACTCTGCG TGTAAATTTTCTGCTTCATTTGATAGGAGTTAATTCAATTGGATGTAGGGATGACAATTGACATTGGGTAGGATACATAG TTTTATGCTACACATTTTTATACCCGCATTTTCAAAAAGTATTGATACTTGTCCCATACTCGTGTGGGTAGTAATTTGAG TATCCATCCTCATACCTACTAGATACCTATGCGCAAGTATCCATTACCCTTAAATTAGCTAATTAAAATATAACTTTCA
CDS sequence (LotjaGi1g1v0228900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTATCACCTCCTTCAAATCCCTCACAACAATGGCGGAATCATGTCTTCTCTCTGCACCCTCCTCACTCTTCTACAA CAAAACCAAACACCTCTTCTTCTCAGCTCCCTCCAGACCCCTCAAACTCCAACTCTCATCCATCAACCCTTCACCCGCTC TCTCCCTCGCCGCCACAACCCACCACCGCTCTTCCGCGCCCCTCTTCGTCGCCCAGACTTCCGACTGGGCCCAGCAAGAA GAAGACAACACGCTCACCCTCGAAGACCAAGAAGAAGGAGCAGAAGGTGTCAGCGAAACCGAAGCGGGTTGGGAACCCAA CGGTGAAGACGCTGAAATCGAGGGTGCTGAAGAAGGAGAAGGAGAAGAAGGAGATTACGAGGAACCACCAGAAGAGGCTA AACTCTTTGTTGGGAACTTGCCTTATGATGCTGATGGTCACAAATTGGCCGAACTTTTCAACCAAGTTGGAACCGTGGAT CTTGCGGAGGTTATTTATAACAGGGAAACTGACCAGAGCCGTGGCTTTGGATTTGTCACCATGAAAACGGTTGAAGATGC TGAGAAAGCTGTGGATAAGTTAAACGGCTATGATTTCGGTGGTAGACTGTTGACTGTTAATAAGGCTGCTCCAAGAGGAT CTAGGCCAGAACGTGCCCCTCGTAGCTTTGATGCCCAACCTGCCTTTAGAGTATATGTTGGTAATTTGCCATGGGATTTT GACAATAGTCAGTTGGAGCAGGTTTTCAGTGAACATGGTAAGGTTGTGAGTGCCCGGGTAGTGTATGATAGAGAAACTGG ACGATCACGTGGCTTTGGCTTTGTCACAATGTCTGATGAGGCAGAATTGAATGATGCCATTGCTGCCCTTGATGGTCAGA GTTTGGGCGGGAGGACAATCAGAGTGAATGTTGCAGAAGATAGGCCAAGGCGTTCCTTTTGA
Protein sequence (LotjaGi1g1v0228900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSITSFKSLTTMAESCLLSAPSSLFYNKTKHLFFSAPSRPLKLQLSSINPSPALSLAATTHHRSSAPLFVAQTSDWAQQE EDNTLTLEDQEEGAEGVSETEAGWEPNGEDAEIEGAEEGEGEEGDYEEPPEEAKLFVGNLPYDADGHKLAELFNQVGTVD LAEVIYNRETDQSRGFGFVTMKTVEDAEKAVDKLNGYDFGGRLLTVNKAAPRGSRPERAPRSFDAQPAFRVYVGNLPWDF DNSQLEQVFSEHGKVVSARVVYDRETGRSRGFGFVTMSDEAELNDAIAALDGQSLGGRTIRVNVAEDRPRRSF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 71 | 216 | 146 | 3.8E-29 | ||
| MobiDBLite | 87 | 130 | 44 | - | – | |
| MobiDBLite | 105 | 129 | 25 | - | – | |
| PANTHER | 112 | 313 | 202 | 3.0E-94 | – | |
| PANTHER | 112 | 313 | 202 | 3.0E-94 | – | |
| SUPERFAMILY | 128 | 223 | 96 | 2.15E-29 | ||
| ProSiteProfiles | 133 | 211 | 79 | 19.11 | ||
| CDD | 134 | 211 | 78 | 2.42516E-34 | – | |
| SMART | 134 | 207 | 74 | 1.3E-26 | ||
| Pfam | 135 | 204 | 70 | 3.9E-21 | ||
| Gene3D | 217 | 312 | 96 | 2.3E-30 | ||
| SUPERFAMILY | 220 | 311 | 92 | 7.66E-31 | ||
| ProSiteProfiles | 229 | 307 | 79 | 20.559 | ||
| SMART | 230 | 303 | 74 | 4.9E-30 | ||
| CDD | 230 | 306 | 77 | 9.09488E-37 | – | |
| Pfam | 231 | 301 | 71 | 5.1E-23 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi1g1v0228900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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