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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0232300 |
| Transcript ID | LotjaGi1g1v0232300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT5G38580.1 FBD-like domain family protein; Swiss-Prot: sp|Q9FM89|FDL38_ARATH F-box/FBD/LRR-repeat protein At5g56420; TrEMBL-Plants: tr|I3S460|I3S460_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0232300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:54596303..54599319) extracted from Lotus japonicus Gifu genome v1.2.
GGTTAAGGTGGTTCCTGAATTTCCAATTTAATGCATGTGGTCCTCAATCTTGTGAGCTGGGATTCGGTGCTTGAGATGCT AAACAATTGCCCCAAGCTTCAGGTTTTGGCAATTTCTTCATGTCAAGGTTCTTTTTCGCCTGACCCTCATATTGTTCCGA AATGTCTTACTTCACGGTTCAGCGAGTGCTCTCTTAAATGTTGCTATGGTACAGCAAGTGATCTGCGATTTGCAAAATAT ATAATGCATAATTCAACAACTTTACGGACCATGACGATTTGCTGTGAGTCTTCCTTACGTCCACCCAGAAAACATGAAAT GCTTAAAGAATTAGCTTTATGCCCAAGGAGATCTGCATTATGTGAACTCTTATTTAAATGATAACTGCTAGGCTGCAAAT TGTTCTTAGATAACTGCATATGTTACTAGTTAATTTAATGCAACAGCTGGTTTTGAAGAACAAGAATTTTATGTAATTGT TTCGTTTTGTCCTGTACTCATTTATCTGCTTATTGTTTGATAAACTCAATTCTGATTCCTGACCACAGGATGTGAGGGTT TATATGGATAACAGTATTTTGGTGAGGCATTACTCTGTCTCTCTCTCTTTAAAAATATTATTTTTCTTTTCTCTTTTGAT AACAGTATCAAGGTCCCTAGTCCTGACTGCCATGTTTATGTGTTCTTGAAAGTAGAGATAGAAATCTTTTATTTCGAAAG TAAACTCTAGTTCCTAATAAACCAGCCCAACCAATTCCAACTAAATCAAAAACTCCTAACTGAGGCTTTGATTCCTCTAT TTACAGCTAACACCTAACTAACTAAAAGTTAGTTACAATTAGTCATTTTTCTTCTCTGTTTAAGCCTATACCTATTAGAC ACTGTGTTCTTCGTTGCAAAATTAATGGTTAATGCAAGATGAAGGAATCCATATCGGCTAGAATCTTTTTTCTTTTTTCA GGTGCACTGGAGAAATCATTGGTGTTTTCAGTACCAATAATGTGCGACTCAGGTGAAAGACTAACAAGTGAAGGTAAGGA TTCAAGCGTTAGAGAACGCATTTTCGGGAGCCTGATCTTGCTAGTTTGTCCAGCATCCTCTTGTTCTTCCTTGGCTATGA TATAGGTCATATCTTTACATTCTGAAATCTCAATTTCCAGAAGTTCAGAAAGGTGTTTAACCATGGAATGCAATAAAACA GACTCCATCCTATCACAACCCTTTACTTTGATAAGTTGCAGTTTGGTAAAAGCTTGTGCTGGAAGTGGGCCAGTGCATAT TCTCTCCATGTTAATCAGACTGTGAATGATCAAAGACTCCAATTTGGGGAAGGCATGATCATGATGAGCCCACTCAGTTG AGCCAATAATGCTCTGCATTTCATCACAGTTTTGGATATTAAGATGCTTCAATTGTGAAAATCCTTCATCATTCAATTCA TAAAGTATTTCCTTGACACCCTTTAGTTCAGCTAAATACAAATCTTCAGCGTGAATCATCAGCAACTTCATCCCATAATC CATAAGAATGCTTGGATCCATGCTCAAATTTAGCTTAAGAACTCTTGAAGTTTGGTAATTCTCAGACTCCACAGCGGACC ATTTCCATCCATCCCCGATGATAATCTTGTAGCTTTCAAGTTTTCCAAAGGCTAGCAAGTCTCTAGGAAAAACTGAAGTA TATTTTATCTGCATATTCAAAGTTTTTAGTCCATGCAAATGTCTTAACTCACTCAATCTTGAATTAGTCATTTCATTTTC ATTTCCCTCGGCCTCCCATTGAATATTACAGTTCCCCATGTAGAGCTCTTCCAAGCTAGTCAAACTAGATAATAGGTTGC AAGGTATTTCTCCTAGTGTGGAGCAATCAGTCAAATATAGCAACCGTAGATGAGTCATTTCTCCTATTTCTGCAGGGAGC TCTTTGAGCTCAGAATTTTCAAGGTTGAGAATCTCTAAAGTTGGGATTTGTCCAACAATACTAATGTCTTCCAACATGCA TTTGAACAGACTCAACGATTGGAGGTTTGTCAAAAGACCAAGAGATGGAGGAAGGGATGGAGTACAATTCACTCCTCCTA AACTTAGGACCTTCAATTCTTTCATCAGAACAAAGAAATTGTCAGGAACTTTCAAATTGTTGCCTTGACAGTTGAGTTGG AGTATCTTCAACTTGGGACATTCTAACATCTCAGGAAGTTCATGGACAAAACACCAGTCCAGGAAAATATGATGACAAGT TTTAAAGAGATCCATTCTTGGCCATTCTTTCAGTTCAGTGTTTCTCTGTACAGTGAAGAAAGGTTTGACCGTGGATGAAA TGGATGCAGCGACATTGCGAACAATATCGAGCATCACAAGCGAATCTCTTTTCCCTTCAAATAACAAACAAGCAGCTCTC AGGTTGTCTATCAATTTGTAAAGTCTGTTTCTCCCATCTGCCAGTGTATCAACATGTTTATGCAAACCCAAGCACCAACC AAACACCAACAAATCTTTGGTGCTACAACCATTTCCCATTGAACCCAAAAGGAGGAAGAACGTTTTGAGTTCTTGGCTTT CTAAATAATTATAACTCATCTCAATAGAAGATTGCACTTGAGAATAAAAGCATCCATCCAGGTCAAAATTTTCTATCTGC TCTAGCGCATCCTTCCAAGCATAAAAATCCTTGTTCTTTAACGCGTCCACCATTGTGACTAACAAAAGTGGCAAACCAGC ACAGCTTTTGGACACTTTCATTGCTACAGGTTGAATGCTTGTGCTTCCTCTACAGCTGCATGCACTCTATTAAACCAGTC GCCTACAGTGTCTTCTATCTCTTCACCATTCCTTTTGGCTGCTTCAACAGTGTGTCTGACTTCTTTCTCCTCCCGTTTCA GCTTCTGAATCTGGACCTCAAGGTCTGTGAGGTAACTGTTGTACATCAATACATAGGTTATGTTTCGTAGTAAAGGTACA GCCACGTTTGAAGCTACGCTAGCAATAGCATCCATATTTGTCTCGGGCTTCTTGGTT
CDS sequence (LotjaGi1g1v0232300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCATGTGGTCCTCAATCTTGTGAGCTGGGATTCGGTGCTTGAGATGCTAAACAATTGCCCCAAGCTTCAGGTTTTGGC AATTTCTTCATGTCAAGGTTCTTTTTCGCCTGACCCTCATATTGTTCCGAAATGTCTTACTTCACGGTTCAGCGAGTGCT CTCTTAAATGTTGCTATGGTACAGCAAGTGATCTGCGATTTGCAAAATATATAATGCATAATTCAACAACTTTACGGACC ATGACGATTTGCTGTGAGTCTTCCTTACGTCCACCCAGAAAACATGAAATGCTTAAAGAATTAGCTTTATGCCCAAGGAG ATCTGCATTATGTGAACTCTTATTTAAATGA
Protein sequence (LotjaGi1g1v0232300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHVVLNLVSWDSVLEMLNNCPKLQVLAISSCQGSFSPDPHIVPKCLTSRFSECSLKCCYGTASDLRFAKYIMHNSTTLRT MTICCESSLRPPRKHEMLKELALCPRRSALCELLFK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 8 | 113 | 106 | 6.1E-21 | – | |
| PANTHER | 8 | 113 | 106 | 6.1E-21 | – | |
| Pfam | 40 | 83 | 44 | 8.5E-9 | ||
| SMART | 44 | 116 | 73 | 1.9E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0232300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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